AT5G04280 : AtRZ-1c
Query Information
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AGICode AT5G04280
Description RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1c, RZ-1c 1 0.32 -0.32
2 AT2G31360 16:0delta9 desaturase 2 16:0delta9 desaturase 2,
16:0delta9 desaturase 2		 0.81 0.34 -0.32
3 AT1G13020 eukaryotic initiation factor 4B2 eukaryotic initiation factor 4B2 0.79 0.31 -0.31
4 AT1G54380 spliceosome protein-related 0.76 0.3 -0.28
5 AT5G53400 HSP20-like chaperones superfamily protein BOBBER1 0.76 0.31 -0.32
6 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.33 -0.31
7 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.74 0.32 -0.32
8 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.73 0.33 -0.31
9 AT1G06710 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.31 -0.32
10 AT4G17090 chloroplast beta-amylase BETA-AMYLASE 3, BETA-AMYLASE 8,
chloroplast beta-amylase		 0.72 0.33 -0.33
11 AT4G30935 WRKY DNA-binding protein 32 ATWRKY32, WRKY DNA-binding protein
32		 0.72 0.32 -0.33
12 AT1G13690 ATPase E1 ATPase E1 0.72 0.31 -0.31
13 AT5G56740 histone acetyltransferase of the GNAT family 2 HAC07, HAC7, HAG02, histone
acetyltransferase of the GNAT
family 2		 0.72 0.33 -0.32
14 AT1G80920 Chaperone DnaJ-domain superfamily protein AtJ8, translocon at the outer
envelope membrane of chloroplasts
12, J8, translocon at the outer
envelope membrane of chloroplasts
12		 -0.71 0.35 -0.3
15 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.71 0.35 -0.32
16 AT3G05660 receptor like protein 33 receptor like protein 33, receptor
like protein 33		 0.71 0.34 -0.31
17 AT5G04670 Enhancer of polycomb-like transcription factor protein 0.71 0.32 -0.3
18 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.71 0.33 -0.32
19 AT4G28480 DNAJ heat shock family protein 0.71 0.32 -0.31
20 AT1G49560 Homeodomain-like superfamily protein 0.7 0.32 -0.32
21 AT4G14900 FRIGIDA-like protein 0.7 0.32 -0.3
22 AT5G48250 B-box type zinc finger protein with CCT domain 0.7 0.32 -0.31
23 AT3G44110 DNAJ homologue 3 ATJ, DNAJ homologue 3, J3 0.7 0.31 -0.33
24 AT2G19190 FLG22-induced receptor-like kinase 1 FLG22-induced receptor-like kinase
1		 0.7 0.33 -0.31
25 AT1G07360 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5A 0.7 0.32 -0.31
26 AT4G38580 farnesylated protein 6 farnesylated protein 6,
farnesylated protein 6, HEAVY
METAL ASSOCIATED ISOPRENYLATED
PLANT PROTEIN 26		 0.7 0.32 -0.3
27 AT2G28720 Histone superfamily protein 0.7 0.31 -0.32
28 AT3G09440 Heat shock protein 70 (Hsp 70) family protein 0.7 0.29 -0.33
29 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 0.7 0.32 -0.32
30 AT4G39260 cold, circadian rhythm, and RNA binding 1 GLYCINE-RICH PROTEIN 8, cold,
circadian rhythm, and RNA binding
1, glycine-rich RNA-binding
protein 8, GRP8		 0.7 0.34 -0.31
31 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein 0.7 0.33 -0.31
32 AT5G57460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to
166 proteins in 41 species: Archae - 0; Bacteria - 0;
Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 0.69 0.31 -0.28
33 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.68 0.31 -0.3
34 AT1G32860 Glycosyl hydrolase superfamily protein 0.68 0.31 -0.32
35 AT1G70290 trehalose-6-phosphatase synthase S8 ATTPS8, ATTPSC,
trehalose-6-phosphatase synthase
S8		 -0.68 0.32 -0.32
36 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.33 -0.31
37 AT4G35310 calmodulin-domain protein kinase 5 ATCPK5, calmodulin-domain protein
kinase 5		 0.67 0.32 -0.31
38 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 0.67 0.32 -0.32
39 AT4G31270 sequence-specific DNA binding transcription factors -0.67 0.33 -0.33
40 AT2G21520 Sec14p-like phosphatidylinositol transfer family protein 0.67 0.31 -0.31
41 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.66 0.31 -0.32
42 AT3G27670 ARM repeat superfamily protein RESURRECTION1 -0.66 0.31 -0.31
43 AT4G12640 RNA recognition motif (RRM)-containing protein 0.66 0.32 -0.31
44 AT2G33730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.66 0.32 -0.29
45 AT3G57320 unknown protein; Has 30 Blast hits to 30 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.32 -0.3
46 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 -0.65 0.31 -0.34
47 AT5G13760 Plasma-membrane choline transporter family protein -0.65 0.31 -0.33
48 AT5G65120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G10110.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.65 0.32 -0.31
49 AT3G12280 retinoblastoma-related 1 RETINOBLASTOMA-RELATED PROTEIN 1,
RB, RETINOBLASTOMA 1,
RETINOBLASTOMA-RELATED,
retinoblastoma-related 1		 0.65 0.32 -0.32
50 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 0.64 0.31 -0.29
51 AT3G27550 RNA-binding CRS1 / YhbY (CRM) domain protein 0.64 0.28 -0.32
52 AT1G13560 aminoalcoholphosphotransferase 1 aminoalcoholphosphotransferase 1,
ATAAPT1		 0.64 0.32 -0.35
53 AT5G41600 VIRB2-interacting protein 3 VIRB2-interacting protein 3,
Reticulan like protein B4		 0.64 0.31 -0.33
54 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 0.64 0.31 -0.31
55 AT3G22840 Chlorophyll A-B binding family protein ELIP, EARLY LIGHT-INDUCABLE
PROTEIN		 0.64 0.3 -0.33
56 AT1G02330 CONTAINS InterPro DOMAIN/s: Hepatocellular
carcinoma-associated antigen 59 (InterPro:IPR010756); Has
1239 Blast hits to 998 proteins in 204 species: Archae - 4;
Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87;
Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).		 0.64 0.33 -0.31
57 AT2G45170 AUTOPHAGY 8E AUTOPHAGY 8E, AUTOPHAGY 8E -0.64 0.31 -0.3
58 AT3G02700 NC domain-containing protein-related -0.63 0.31 -0.31
59 AT2G17870 cold shock domain protein 3 ARABIDOPSIS COLD SHOCK DOMAIN
PROTEIN 3, cold shock domain
protein 3		 0.63 0.31 -0.34
60 AT2G31380 salt tolerance homologue salt tolerance homologue 0.63 0.32 -0.34
61 AT3G07390 auxin-responsive family protein Auxin-Induced in Root cultures 12 0.63 0.3 -0.33
62 AT5G63110 histone deacetylase 6 HISTONE DEACETYLASE 6, AXE1,
histone deacetylase 6, RPD3B,
RNA-MEDIATED TRANSCRIPTIONAL
SILENCING 1, SIL1		 0.63 0.3 -0.34
63 AT3G06850 2-oxoacid dehydrogenases acyltransferase family protein BCE2, DARK INDUCIBLE 3, LTA1 -0.63 0.32 -0.31
64 AT5G43440 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.63 0.32 -0.31
65 AT4G38960 B-box type zinc finger family protein 0.63 0.3 -0.33
66 AT5G57670 Protein kinase superfamily protein -0.63 0.32 -0.31
67 AT1G54680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in
57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi -
0; Plants - 127; Viruses - 0; Other Eukaryotes - 14
(source: NCBI BLink).		 -0.62 0.3 -0.3
68 AT1G28320 protease-related DEG15 -0.62 0.33 -0.31
69 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.62 0.32 -0.32
70 AT3G52480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 10 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage; Has 28 Blast
hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.32 -0.3
71 AT3G17510 CBL-interacting protein kinase 1 CBL-interacting protein kinase 1,
SNF1-RELATED PROTEIN KINASE 3.16		 -0.6 0.31 -0.32
72 AT5G55810 nicotinate/nicotinamide mononucleotide adenyltransferase nicotinate/nicotinamide
mononucleotide adenyltransferase,
nicotinate/nicotinamide
mononucleotide adenyltransferase		 -0.6 0.3 -0.31
73 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 -0.59 0.31 -0.29
74 AT3G47000 Glycosyl hydrolase family protein -0.58 0.31 -0.32
75 AT2G41760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function WDYHV (InterPro:IPR019161); Has 201 Blast
hits to 201 proteins in 90 species: Archae - 0; Bacteria -
2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0;
Other Eukaryotes - 27 (source: NCBI BLink).		 -0.58 0.32 -0.32
76 AT1G11160 Transducin/WD40 repeat-like superfamily protein -0.56 0.33 -0.31
77 AT1G19025 DNA repair metallo-beta-lactamase family protein -0.56 0.32 -0.34
78 AT1G59520 CW7 CW7 -0.56 0.34 -0.31
79 AT5G40890 chloride channel A chloride channel A, ATCLCA,
chloride channel A, CHLORIDE
CHANNEL-A, CHLORIDE CHANNEL A		 -0.56 0.32 -0.3
80 AT4G01450 nodulin MtN21 /EamA-like transporter family protein -0.55 0.32 -0.33
81 AT1G55520 TATA binding protein 2 A. THALIANA TATA BINDING PROTEIN
2, TATA binding protein 2		 -0.54 0.34 -0.32
82 AT5G05800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.54 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
83 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.64 0.42 -0.44 C0053
84 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis -0.64 0.46 -0.45