AT3G56710 : sigma factor binding protein 1
Query Information
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AGICode AT3G56710
Description sigma factor binding protein 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G56710 sigma factor binding protein 1 sigma factor binding protein 1 1 0.3 -0.34
2 AT1G75590 SAUR-like auxin-responsive protein family -0.79 0.32 -0.31
3 AT3G48650 pseudogene, At14a-related protein, similar to At14a
(GI:11994571 and GI:11994573) (Arabidopsis thaliana)		 0.77 0.32 -0.31
4 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 0.76 0.31 -0.3
5 AT3G45640 mitogen-activated protein kinase 3 ATMAPK3, mitogen-activated protein
kinase 3, mitogen-activated
protein kinase 3		 0.75 0.31 -0.31
6 AT5G24660 response to low sulfur 2 RESPONSE TO LOW SULFUR 2 0.71 0.31 -0.32
7 AT3G04210 Disease resistance protein (TIR-NBS class) 0.71 0.33 -0.31
8 AT3G55130 white-brown complex homolog 19 ATP-binding cassette G19,
white-brown complex homolog 19,
white-brown complex homolog 19		 0.71 0.3 -0.32
9 AT2G14560 Protein of unknown function (DUF567) LATE UPREGULATED IN RESPONSE TO
HYALOPERONOSPORA PARASITICA		 0.71 0.32 -0.32
10 AT1G20823 RING/U-box superfamily protein 0.71 0.31 -0.31
11 AT4G28400 Protein phosphatase 2C family protein 0.7 0.32 -0.32
12 AT5G52320 cytochrome P450, family 96, subfamily A, polypeptide 4 cytochrome P450, family 96,
subfamily A, polypeptide 4		 0.7 0.35 -0.32
13 AT2G40750 WRKY DNA-binding protein 54 WRKY DNA-BINDING PROTEIN 54, WRKY
DNA-binding protein 54		 0.7 0.32 -0.32
14 AT5G03350 Legume lectin family protein 0.69 0.3 -0.29
15 AT3G17700 cyclic nucleotide-binding transporter 1 CYCLIC NUCLEOTIDE-GATED CHANNEL
20, cyclic nucleotide-binding
transporter 1, CNGC20		 0.69 0.32 -0.3
16 AT5G64800 CLAVATA3/ESR-RELATED 21 CLAVATA3/ESR-RELATED 21 0.69 0.31 -0.33
17 AT5G60900 receptor-like protein kinase 1 receptor-like protein kinase 1 0.69 0.31 -0.32
18 AT4G23180 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 cysteine-rich RLK (RECEPTOR-like
protein kinase) 10, RLK4		 0.69 0.31 -0.33
19 AT2G23680 Cold acclimation protein WCOR413 family 0.68 0.31 -0.32
20 AT1G25390 Protein kinase superfamily protein 0.68 0.32 -0.32
21 AT3G22231 pathogen and circadian controlled 1 PATHOGEN AND CIRCADIAN CONTROLLED
1		 0.68 0.29 -0.32
22 AT1G01780 GATA type zinc finger transcription factor family protein PLIM2b -0.67 0.3 -0.31
23 AT4G02410 Concanavalin A-like lectin protein kinase family protein 0.67 0.3 -0.32
24 AT3G25070 RPM1 interacting protein 4 RPM1 interacting protein 4 0.67 0.32 -0.33
25 AT2G07020 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.67 0.32 -0.32
26 AT5G54610 ankyrin ankyrin 0.66 0.34 -0.32
27 AT1G48210 Protein kinase superfamily protein 0.66 0.3 -0.31
28 AT3G56400 WRKY DNA-binding protein 70 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 70, WRKY
DNA-binding protein 70		 0.66 0.32 -0.29
29 AT1G51670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G48180.1); Has 37 Blast hits
to 37 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.34 -0.33
30 AT5G02290 Protein kinase superfamily protein NAK 0.65 0.34 -0.31
31 AT3G51410 Arabidopsis protein of unknown function (DUF241) -0.65 0.34 -0.3
32 AT5G26920 Cam-binding protein 60-like G Cam-binding protein 60-like G 0.65 0.3 -0.32
33 AT3G13440 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.65 0.29 -0.32
34 AT4G37580 Acyl-CoA N-acyltransferases (NAT) superfamily protein CONSTITUTIVE PHOTOMORPHOGENIC 3,
HOOKLESS 1, UNUSUAL SUGAR RESPONSE
2		 -0.65 0.31 -0.33
35 AT1G62770 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.65 0.33 -0.34
36 AT4G32460 Protein of unknown function, DUF642 -0.65 0.31 -0.29
37 AT4G37890 Zinc finger (C3HC4-type RING finger) family protein embryo sac development arrest 40 -0.65 0.33 -0.31
38 AT5G11610 Exostosin family protein 0.64 0.31 -0.32
39 AT2G26400 acireductone dioxygenase 3 ACIREDUCTONE DIOXYGENASE,
acireductone dioxygenase 3,
acireductone dioxygenase 3		 0.64 0.3 -0.31
40 AT1G19630 cytochrome P450, family 722, subfamily A, polypeptide 1 cytochrome P450, family 722,
subfamily A, polypeptide 1		 0.64 0.33 -0.32
41 AT1G76960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 8 growth stages; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.63 0.33 -0.34
42 AT1G23840 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: 18 plant structures; EXPRESSED DURING: 12 growth
stages; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G23850.1); Has 53 Blast hits to 48
proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.63 0.32 -0.29
43 AT3G62100 indole-3-acetic acid inducible 30 indole-3-acetic acid inducible 30 -0.63 0.31 -0.32
44 AT2G24600 Ankyrin repeat family protein 0.63 0.32 -0.32
45 AT2G28940 Protein kinase superfamily protein 0.63 0.31 -0.34
46 AT5G53460 NADH-dependent glutamate synthase 1 NADH-dependent glutamate synthase
1		 -0.63 0.3 -0.31
47 AT1G69630 F-box/RNI-like superfamily protein 0.63 0.33 -0.31
48 AT4G26070 MAP kinase/ ERK kinase 1 ATMEK1, MAP kinase/ ERK kinase 1,
MITOGEN ACTIVATED PROTEIN KINASE
KINASE 1, NMAPKK		 0.63 0.33 -0.32
49 AT5G02800 Protein kinase superfamily protein CDG1-like 1 0.63 0.32 -0.32
50 AT1G51700 DOF zinc finger protein 1 DOF zinc finger protein 1, DOF
zinc finger protein 1		 0.63 0.32 -0.32
51 AT1G02120 GRAM domain family protein VASCULAR ASSOCIATED DEATH1 0.62 0.32 -0.3
52 AT1G73805 Calmodulin binding protein-like SAR Deficient 1 0.62 0.33 -0.34
53 AT4G24010 cellulose synthase like G1 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE LIKE G1, cellulose
synthase like G1		 0.62 0.32 -0.3
54 AT3G56260 unknown protein; Has 20 Blast hits to 19 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2;
Plants - 10; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.62 0.3 -0.32
55 AT4G15570 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 MAGATAMA 3 -0.62 0.32 -0.32
56 AT4G22850 SNARE associated Golgi protein family -0.62 0.31 -0.32
57 AT3G49960 Peroxidase superfamily protein -0.62 0.32 -0.29
58 AT4G39190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits
to 3562 proteins in 401 species: Archae - 12; Bacteria -
497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses -
22; Other Eukaryotes - 3119 (source: NCBI BLink).		 0.62 0.34 -0.32
59 AT2G37710 receptor lectin kinase receptor lectin kinase 0.62 0.3 -0.32
60 AT5G51670 Protein of unknown function (DUF668) -0.61 0.33 -0.3
61 AT1G33790 jacalin lectin family protein -0.61 0.33 -0.31
62 AT2G46400 WRKY DNA-binding protein 46 WRKY DNA-BINDING PROTEIN 46, WRKY
DNA-binding protein 46		 0.61 0.33 -0.29
63 AT3G60420 Phosphoglycerate mutase family protein 0.61 0.32 -0.32
64 AT4G40090 arabinogalactan protein 3 arabinogalactan protein 3 -0.61 0.33 -0.32
65 AT2G13230 transposable element gene -0.61 0.31 -0.3
66 AT4G14090 UDP-Glycosyltransferase superfamily protein 0.61 0.34 -0.34
67 AT2G06170 transposable element gene -0.61 0.32 -0.31
68 AT5G44070 phytochelatin synthase 1 (PCS1) ARA8, ARABIDOPSIS THALIANA
PHYTOCHELATIN SYNTHASE 1, CADMIUM
SENSITIVE 1, PHYTOCHELATIN
SYNTHASE 1		 0.61 0.33 -0.32
69 AT4G17990 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17700.1); Has 134 Blast hits
to 131 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.31 -0.31
70 AT2G36480 ENTH/VHS family protein -0.6 0.32 -0.32
71 AT3G62780 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.6 0.3 -0.33
72 AT1G70190 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein
L7/L12, C-terminal/adaptor protein ClpS-like		 -0.6 0.34 -0.31
73 AT5G52750 Heavy metal transport/detoxification superfamily protein 0.6 0.32 -0.3
74 AT2G24000 serine carboxypeptidase-like 22 serine carboxypeptidase-like 22 0.6 0.34 -0.32
75 AT2G20950 Arabidopsis phospholipase-like protein (PEARLI 4) family 0.6 0.29 -0.3
76 AT3G50750 BES1/BZR1 homolog 1 BES1/BZR1 homolog 1 0.6 0.31 -0.28
77 AT1G07770 ribosomal protein S15A ribosomal protein S15A -0.6 0.31 -0.29
78 AT5G19240 Glycoprotein membrane precursor GPI-anchored 0.6 0.32 -0.31
79 AT2G21070 methyltransferases FIONA1 -0.6 0.33 -0.33
80 AT4G34970 actin depolymerizing factor 9 actin depolymerizing factor 9 -0.6 0.33 -0.31
81 AT3G31320 transposable element gene 0.6 0.31 -0.3
82 AT2G37340 arginine/serine-rich zinc knuckle-containing protein 33 arginine/serine-rich zinc
knuckle-containing protein 33,
ARGININE/SERINE-RICH ZINC
KNUCKLE-CONTAINING PROTEIN 33,
arginine/serine-rich zinc
knuckle-containing protein 33,
arginine/serine-rich zinc
knuckle-containing protein 33		 -0.6 0.31 -0.32
83 AT3G12540 Protein of unknown function, DUF547 -0.6 0.3 -0.33
84 AT5G39670 Calcium-binding EF-hand family protein 0.59 0.3 -0.31
85 AT2G14700 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.59 0.32 -0.31
86 AT4G00680 actin depolymerizing factor 8 actin depolymerizing factor 8 -0.59 0.33 -0.33
87 AT4G11300 Protein of unknown function (DUF793) 0.59 0.35 -0.29
88 AT5G13910 Integrase-type DNA-binding superfamily protein LEAFY PETIOLE -0.59 0.34 -0.32
89 AT5G67400 root hair specific 19 root hair specific 19 -0.59 0.32 -0.34
90 AT2G32430 Galactosyltransferase family protein 0.59 0.31 -0.32
91 AT3G26370 O-fucosyltransferase family protein -0.59 0.32 -0.34
92 AT2G46630 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; Has
110095 Blast hits to 59224 proteins in 2216 species: Archae
- 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843;
Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876
(source: NCBI BLink).		 0.59 0.33 -0.32
93 AT1G50590 RmlC-like cupins superfamily protein 0.59 0.34 -0.32
94 AT1G07000 exocyst subunit exo70 family protein B2 exocyst subunit exo70 family
protein B2, exocyst subunit exo70
family protein B2		 0.59 0.3 -0.34
95 AT2G05120 Nucleoporin, Nup133/Nup155-like -0.59 0.3 -0.33
96 AT1G80070 Pre-mRNA-processing-splicing factor EMBRYO DEFECTIVE 14, EMBRYO
DEFECTIVE 177, EMBRYO DEFECTIVE
33, ABNORMAL SUSPENSOR 2		 -0.59 0.34 -0.34
97 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15		 -0.59 0.32 -0.29
98 AT1G21130 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 4		 0.59 0.31 -0.3
99 AT4G27290 S-locus lectin protein kinase family protein -0.59 0.31 -0.31
100 AT4G13510 ammonium transporter 1;1 ammonium transporter 1;1,
ARABIDOPSIS THALIANA AMMONIUM
TRANSPORT 1, ATAMT1;1		 0.59 0.31 -0.33
101 AT3G24490 Alcohol dehydrogenase transcription factor Myb/SANT-like
family protein		 -0.58 0.3 -0.31
102 AT2G23070 Protein kinase superfamily protein -0.58 0.34 -0.3
103 AT1G56020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G12970.1); Has 3011 Blast hits
to 958 proteins in 192 species: Archae - 0; Bacteria - 193;
Metazoa - 479; Fungi - 286; Plants - 158; Viruses - 8;
Other Eukaryotes - 1887 (source: NCBI BLink).		 -0.58 0.33 -0.3
104 AT4G33800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.58 0.31 -0.32
105 AT4G25790 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.58 0.31 -0.33
106 AT4G26010 Peroxidase superfamily protein -0.58 0.31 -0.31
107 AT2G20520 FASCICLIN-like arabinogalactan 6 FASCICLIN-like arabinogalactan 6 -0.58 0.33 -0.32
108 AT1G49210 RING/U-box superfamily protein -0.58 0.28 -0.32
109 AT1G73840 hydroxyproline-rich glycoprotein family protein ENHANCED SILENCING PHENOTYPE 1 -0.57 0.31 -0.3
110 AT4G08150 KNOTTED-like from Arabidopsis thaliana BREVIPEDICELLUS, BREVIPEDICELLUS
1, KNOTTED-like from Arabidopsis
thaliana		 -0.57 0.31 -0.31
111 AT4G09140 MUTL-homologue 1 ARABIDOPSIS THALIANA
MUTL-HOMOLOGUE 1, MUTL-homologue 1		 -0.57 0.33 -0.29
112 AT1G33700 Beta-glucosidase, GBA2 type family protein -0.57 0.3 -0.31
113 AT5G47550 Cystatin/monellin superfamily protein -0.57 0.29 -0.32
114 AT5G57240 OSBP(oxysterol binding protein)-related protein 4C OSBP(oxysterol binding
protein)-related protein 4C		 -0.57 0.31 -0.32
115 AT2G48100 Exonuclease family protein -0.56 0.31 -0.32
116 AT5G04960 Plant invertase/pectin methylesterase inhibitor superfamily -0.56 0.31 -0.3
117 AT3G10710 root hair specific 12 root hair specific 12 -0.56 0.31 -0.31
118 AT3G59900 auxin-regulated gene involved in organ size AUXIN-REGULATED GENE INVOLVED IN
ORGAN SIZE		 -0.56 0.3 -0.3
119 AT2G38180 SGNH hydrolase-type esterase superfamily protein -0.56 0.31 -0.33
120 AT2G06040 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: RNI-like superfamily
protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547
proteins in 240 species: Archae - 0; Bacteria - 125;
Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0;
Other Eukaryotes - 439 (source: NCBI BLink).		 -0.56 0.33 -0.31
121 AT1G62090 pseudogene, protein kinase family, similar to light
repressible receptor protein kinase (LRRPK) (Arabidopsis
thaliana) GI:1321686; contains Pfam profiles PF02536:
mTERF, PF00069: Protein kinase domain, PF00560: Leucine
Rich Repeat; blastp match of 38% identity and 1.7e-162
P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf
senescence-associated receptor-like protein kinase
{Phaseolus vulgaris}		 -0.56 0.29 -0.31
122 AT4G10090 elongator protein 6 elongator protein 6 -0.56 0.33 -0.29
123 AT1G54970 proline-rich protein 1 proline-rich protein 1,
proline-rich protein 1, ROOT HAIR
SPECIFIC 7		 -0.56 0.32 -0.33
124 AT1G17070 GC-rich sequence DNA-binding factor-like protein with
Tuftelin interacting domain		 -0.55 0.31 -0.3
125 AT3G24450 Heavy metal transport/detoxification superfamily protein -0.55 0.31 -0.32
126 AT4G18590 Nucleic acid-binding, OB-fold-like protein -0.55 0.31 -0.32
127 AT5G65950 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1683, C-terminal
(InterPro:IPR012880), Foie gras liver health family 1
(InterPro:IPR021773); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.55 0.3 -0.33
128 AT4G25160 U-box domain-containing protein kinase family protein -0.55 0.31 -0.32
129 AT2G36630 Sulfite exporter TauE/SafE family protein -0.55 0.32 -0.31
130 AT3G22680 RNA-DIRECTED DNA METHYLATION 1 RNA-DIRECTED DNA METHYLATION 1 -0.55 0.31 -0.34
131 AT3G14560 unknown protein; Has 6 Blast hits to 6 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.32 -0.35
132 AT5G43180 Protein of unknown function, DUF599 -0.55 0.3 -0.31
133 AT1G09280 CONTAINS InterPro DOMAIN/s: Rhodanese-like
(InterPro:IPR001763), Serine hydrolase
(InterPro:IPR005645); BEST Arabidopsis thaliana protein
match is: Rhodanese/Cell cycle control phosphatase
superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits
to 5912 proteins in 1592 species: Archae - 0; Bacteria -
2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses -
0; Other Eukaryotes - 2186 (source: NCBI BLink).		 -0.55 0.32 -0.32
134 AT1G74870 RING/U-box superfamily protein -0.55 0.33 -0.32
135 AT1G09570 phytochrome A FAR RED ELONGATED HYPOCOTYL 2, FAR
RED ELONGATED 1, ELONGATED
HYPOCOTYL 8, phytochrome A		 -0.55 0.32 -0.31
136 AT3G14860 NHL domain-containing protein -0.55 0.32 -0.31
137 AT3G08980 Peptidase S24/S26A/S26B/S26C family protein -0.55 0.33 -0.32
138 AT1G80100 histidine phosphotransfer protein 6 histidine phosphotransfer protein
6, histidine phosphotransfer
protein 6		 -0.55 0.33 -0.33
139 AT5G06630 proline-rich extensin-like family protein -0.54 0.33 -0.31
140 AT3G26760 NAD(P)-binding Rossmann-fold superfamily protein -0.54 0.32 -0.31
141 AT1G12560 expansin A7 ATEXP7, expansin A7, ATHEXP ALPHA
1.26, EXP7, expansin A7		 -0.54 0.32 -0.3
142 AT5G28410 unknown protein; Has 8 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.54 0.33 -0.29
143 AT1G27620 HXXXD-type acyl-transferase family protein -0.54 0.31 -0.3
144 AT1G79990 structural molecules -0.54 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
145 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.85 0.46 -0.45 C0133
146 C0182 MST_2996.4 - - - 0.8 0.45 -0.43
147 C0126 Isorhamnetin-dirhamnoside - - - -0.67 0.42 -0.46