AT5G25520 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT5G25520
Description SPOC domain / Transcription elongation factor S-II protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 1 0.31 -0.34
2 AT3G63180 TIC-like TICKLE, TIC-like 0.84 0.31 -0.33
3 AT1G05350 NAD(P)-binding Rossmann-fold superfamily protein -0.77 0.3 -0.3
4 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 0.77 0.32 -0.3
5 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B 0.76 0.32 -0.32
6 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.76 0.32 -0.31
7 AT1G24460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins
in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa -
70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other
Eukaryotes - 33775 (source: NCBI BLink).		 TGN-localized SYP41 interacting
protein		 0.76 0.3 -0.32
8 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.74 0.33 -0.3
9 AT2G25490 EIN3-binding F box protein 1 EIN3-binding F box protein 1, FBL6 0.73 0.3 -0.34
10 AT1G08680 ARF GAP-like zinc finger-containing protein ZIGA4 ARF-GAP domain 14, ARF GAP-like
zinc finger-containing protein
ZIGA4		 0.73 0.32 -0.29
11 AT3G62840 Small nuclear ribonucleoprotein family protein -0.73 0.31 -0.33
12 AT5G15240 Transmembrane amino acid transporter family protein 0.72 0.33 -0.3
13 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 0.72 0.31 -0.3
14 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 0.72 0.3 -0.32
15 AT4G32850 nuclear poly(a) polymerase nuclear poly(a) polymerase,
poly(A) polymerase IV		 0.72 0.33 -0.31
16 AT5G19310 Homeotic gene regulator 0.72 0.35 -0.31
17 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 0.71 0.33 -0.31
18 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 0.71 0.31 -0.32
19 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.71 0.3 -0.31
20 AT1G09290 unknown protein; Has 73 Blast hits to 71 proteins in 26
species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11;
Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.71 0.3 -0.29
21 AT3G14570 glucan synthase-like 4 glucan synthase-like 4, atgsl4,
gsl04, glucan synthase-like 4		 0.71 0.32 -0.28
22 AT1G58230 binding 0.71 0.31 -0.32
23 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 -0.7 0.31 -0.34
24 AT5G03970 F-box associated ubiquitination effector family protein -0.69 0.33 -0.32
25 AT4G34040 RING/U-box superfamily protein 0.69 0.34 -0.32
26 AT3G47380 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.68 0.34 -0.31
27 AT2G07360 SH3 domain-containing protein 0.68 0.34 -0.3
28 AT1G17680 tetratricopeptide repeat (TPR)-containing protein 0.68 0.29 -0.33
29 AT1G24330 ARM repeat superfamily protein 0.68 0.32 -0.32
30 AT1G67320 DNA primase, large subunit family EMBRYO DEFECTIVE 2813 -0.68 0.31 -0.33
31 AT1G61620 phosphoinositide binding -0.68 0.33 -0.29
32 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 -0.68 0.3 -0.31
33 AT4G12490 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.68 0.31 -0.31
34 AT1G11260 sugar transporter 1 SUGAR TRANSPORTER 1, sugar
transporter 1		 -0.68 0.34 -0.31
35 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 0.68 0.31 -0.31
36 AT1G17980 poly(A) polymerase 1 poly(A) polymerase 1 0.68 0.3 -0.33
37 AT3G12860 NOP56-like pre RNA processing ribonucleoprotein -0.68 0.32 -0.32
38 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 0.67 0.32 -0.3
39 AT2G43620 Chitinase family protein -0.67 0.34 -0.31
40 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 0.67 0.3 -0.33
41 AT5G27970 ARM repeat superfamily protein 0.67 0.32 -0.32
42 AT1G26840 origin recognition complex protein 6 ARABIDOPSIS THALIANA ORIGIN
RECOGNITION COMPLEX PROTEIN 6,
origin recognition complex protein
6		 -0.67 0.32 -0.3
43 AT4G15330 cytochrome P450, family 705, subfamily A, polypeptide 1 cytochrome P450, family 705,
subfamily A, polypeptide 1		 0.67 0.33 -0.33
44 AT3G58690 Protein kinase superfamily protein -0.67 0.31 -0.32
45 AT5G50170 C2 calcium/lipid-binding and GRAM domain containing protein 0.67 0.32 -0.34
46 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.66 0.32 -0.32
47 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.66 0.32 -0.32
48 AT1G76460 RNA-binding (RRM/RBD/RNP motifs) family protein 0.66 0.3 -0.33
49 AT3G05390 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF248, methyltransferase putative
(InterPro:IPR004159); BEST Arabidopsis thaliana protein
match is: S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein (TAIR:AT4G01240.1);
Has 507 Blast hits to 498 proteins in 33 species: Archae -
4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.66 0.32 -0.31
50 AT2G07690 Minichromosome maintenance (MCM2/3/5) family protein MINICHROMOSOME MAINTENANCE 5 -0.66 0.3 -0.31
51 AT3G32940 RNA-binding KH domain-containing protein 0.66 0.31 -0.31
52 AT3G19930 sugar transporter 4 SUGAR TRANSPORTER 4, sugar
transporter 4		 -0.66 0.31 -0.34
53 AT2G25660 embryo defective 2410 embryo defective 2410 0.66 0.32 -0.32
54 AT1G10430 protein phosphatase 2A-2 protein phosphatase 2A-2 -0.66 0.33 -0.32
55 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.65 0.33 -0.33
56 AT2G45540 WD-40 repeat family protein / beige-related 0.65 0.33 -0.32
57 AT1G17360 BEST Arabidopsis thaliana protein match is:
COP1-interacting protein-related (TAIR:AT1G72410.1); Has
9949 Blast hits to 7480 proteins in 576 species: Archae -
12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants -
444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI
BLink).		 0.65 0.29 -0.3
58 AT3G15980 Coatomer, beta' subunit 0.65 0.31 -0.29
59 AT4G25210 DNA-binding storekeeper protein-related transcriptional
regulator		 -0.65 0.32 -0.32
60 AT4G24240 WRKY DNA-binding protein 7 ATWRKY7, WRKY DNA-binding protein
7		 -0.65 0.3 -0.29
61 AT5G62900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.33 -0.3
62 AT2G38870 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.65 0.32 -0.31
63 AT3G04605 transposable element gene 0.65 0.31 -0.33
64 AT4G37090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.65 0.31 -0.31
65 AT4G13020 Protein kinase superfamily protein MHK 0.65 0.33 -0.34
66 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 0.65 0.33 -0.29
67 AT3G22430 CONTAINS InterPro DOMAIN/s: Domain of unknown function XS
(InterPro:IPR005380); BEST Arabidopsis thaliana protein
match is: XS domain-containing protein / XS zinc finger
domain-containing protein-related (TAIR:AT5G23570.1); Has
565 Blast hits to 510 proteins in 121 species: Archae - 2;
Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51;
Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).		 0.64 0.31 -0.32
68 AT5G24840 tRNA (guanine-N-7) methyltransferase -0.64 0.28 -0.3
69 AT5G41600 VIRB2-interacting protein 3 VIRB2-interacting protein 3,
Reticulan like protein B4		 -0.64 0.31 -0.31
70 AT5G58390 Peroxidase superfamily protein 0.64 0.29 -0.34
71 AT4G29790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits
to 357 proteins in 124 species: Archae - 0; Bacteria - 74;
Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other
Eukaryotes - 190 (source: NCBI BLink).		 0.64 0.33 -0.31
72 AT2G17110 Protein of unknown function (DUF630 and DUF632) 0.64 0.32 -0.31
73 AT1G43900 Protein phosphatase 2C family protein 0.64 0.33 -0.33
74 AT1G68810 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.64 0.3 -0.32
75 AT5G54680 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 basic Helix-Loop-Helix 105,
iaa-leucine resistant3		 0.64 0.3 -0.31
76 AT1G66750 CDK-activating kinase 4 AT;CDKD;2, CDK-activating kinase
4, CDK-ACTIVATING KINASE 4,
CYCLIN-DEPENDENT KINASE D1;2,
CDKD;2		 -0.64 0.32 -0.32
77 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.63 0.31 -0.32
78 AT1G29140 Pollen Ole e 1 allergen and extensin family protein 0.63 0.31 -0.33
79 AT4G12500 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.63 0.32 -0.33
80 AT3G44780 Cysteine proteinases superfamily protein -0.63 0.32 -0.31
81 AT4G00550 digalactosyl diacylglycerol deficient 2 digalactosyl diacylglycerol
deficient 2		 0.63 0.34 -0.31
82 AT1G61840 Cysteine/Histidine-rich C1 domain family protein -0.63 0.31 -0.34
83 AT1G34350 unknown protein; Has 192 Blast hits to 192 proteins in 79
species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi -
0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source:
NCBI BLink).		 -0.63 0.31 -0.32
84 AT1G45160 Protein kinase superfamily protein 0.63 0.3 -0.31
85 AT5G61140 U5 small nuclear ribonucleoprotein helicase 0.63 0.31 -0.33
86 AT3G54290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has 59 Blast
hits to 59 proteins in 14 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.63 0.32 -0.3
87 AT3G59480 pfkB-like carbohydrate kinase family protein -0.63 0.3 -0.31
88 AT2G14570 transposable element gene 0.63 0.3 -0.33
89 AT1G52200 PLAC8 family protein -0.63 0.29 -0.33
90 AT1G80460 Actin-like ATPase superfamily protein GLI1, nonhost resistance to P. s.
phaseolicola 1		 -0.63 0.31 -0.29
91 AT2G02130 low-molecular-weight cysteine-rich 68 low-molecular-weight cysteine-rich
68, PDF2.3		 -0.63 0.31 -0.3
92 AT1G13470 Protein of unknown function (DUF1262) -0.62 0.36 -0.31
93 AT4G28440 Nucleic acid-binding, OB-fold-like protein -0.62 0.33 -0.32
94 AT1G79830 golgin candidate 5 golgin candidate 5 0.62 0.33 -0.31
95 AT1G28570 SGNH hydrolase-type esterase superfamily protein 0.62 0.31 -0.33
96 AT5G56290 peroxin 5 ARABIDOPSIS PEROXIN 5, EMBRYO
DEFECTIVE 2790, peroxin 5		 0.62 0.29 -0.32
97 AT3G05020 acyl carrier protein 1 ACYL CARRIER PROTEIN, acyl carrier
protein 1		 -0.62 0.3 -0.3
98 AT3G55000 tonneau family protein TONNEAU 1, TONNEAU 1A -0.62 0.31 -0.33
99 AT5G18475 Pentatricopeptide repeat (PPR) superfamily protein 0.62 0.32 -0.31
100 AT3G16730 CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex,
subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to
211 proteins in 82 species: Archae - 0; Bacteria - 0;
Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other
Eukaryotes - 66 (source: NCBI BLink).		 hypersensitive to excess boron 2 -0.62 0.31 -0.33
101 AT1G12470 zinc ion binding 0.61 0.34 -0.34
102 AT3G03510 Phototropic-responsive NPH3 family protein 0.61 0.31 -0.29
103 AT3G50080 VIER F-box proteine 2 VIER F-box proteine 2 0.61 0.3 -0.33
104 AT1G03280 Transcription factor TFIIE, alpha subunit 0.61 0.32 -0.31
105 AT2G15530 RING/U-box superfamily protein 0.61 0.31 -0.32
106 AT1G36940 unknown protein; Has 21 Blast hits to 21 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.31 -0.31
107 AT5G63990 Inositol monophosphatase family protein -0.61 0.32 -0.33
108 AT1G18450 actin-related protein 4 actin-related protein 4,
actin-related protein 4		 -0.61 0.32 -0.33
109 AT1G11240 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12
(InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins
in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921;
Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes -
933 (source: NCBI BLink).		 -0.61 0.32 -0.29
110 AT4G37710 VQ motif-containing protein 0.61 0.32 -0.33
111 AT5G27740 ATPase family associated with various cellular activities
(AAA) 		EMBRYO DEFECTIVE 161, EMBRYO
DEFECTIVE 251, EMBRYO DEFECTIVE
2775, replication factor C 3		 -0.61 0.31 -0.31
112 AT1G68420 Class II aaRS and biotin synthetases superfamily protein 0.61 0.31 -0.32
113 AT3G48490 unknown protein; Has 16 Blast hits to 16 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.29 -0.31
114 AT1G47210 cyclin-dependent protein kinase 3;2 cyclin-dependent protein kinase
3;2		 -0.61 0.3 -0.3
115 AT3G20040 Hexokinase ATHXK4, HEXOKINASE-LIKE 2 0.61 0.32 -0.31
116 AT1G75750 GAST1 protein homolog 1 GAST1 protein homolog 1 -0.6 0.32 -0.33
117 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 0.6 0.33 -0.31
118 AT1G15890 Disease resistance protein (CC-NBS-LRR class) family -0.6 0.32 -0.3
119 AT2G36410 Family of unknown function (DUF662) -0.6 0.3 -0.32
120 AT5G04560 HhH-GPD base excision DNA repair family protein DEMETER 0.6 0.34 -0.32
121 AT4G01990 Tetratricopeptide repeat (TPR)-like superfamily protein -0.6 0.3 -0.31
122 AT3G12170 Chaperone DnaJ-domain superfamily protein -0.6 0.31 -0.31
123 AT4G09760 Protein kinase superfamily protein -0.6 0.32 -0.32
124 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 0.6 0.32 -0.31
125 AT3G04020 unknown protein; Has 26 Blast hits to 25 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.6 0.33 -0.32
126 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 0.6 0.32 -0.31
127 AT5G56320 expansin A14 ATEXP14, expansin A14, ATHEXP
ALPHA 1.5, EXPANSIN 14, expansin
A14		 -0.6 0.34 -0.32
128 AT5G56130 Transducin/WD40 repeat-like superfamily protein AtTEX1, TEX1, THO3 -0.59 0.33 -0.32
129 AT5G59460 scarecrow-like transcription factor 11 (SCL11) -0.59 0.31 -0.33
130 AT1G13540 Protein of unknown function (DUF1262) -0.59 0.32 -0.32
131 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein -0.59 0.31 -0.31
132 AT1G64170 cation/H+ exchanger 16 cation/H+ exchanger 16, cation/H+
exchanger 16		 -0.59 0.31 -0.3
133 AT3G29010 Biotin/lipoate A/B protein ligase family -0.59 0.31 -0.31
134 AT4G17640 casein kinase II beta chain 2 casein kinase II beta chain 2 -0.59 0.31 -0.29
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
135 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		0.7 0.49 -0.41 C0233