AT5G06930 : -
Query Information
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AGICode AT5G06930
Description LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in 313 species: Archae - 2; Bacteria - 910; Metazoa - 754; Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes - 1219 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G06930 LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: nucleolar protein gar2-related
(TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in
313 species: Archae - 2; Bacteria - 910; Metazoa - 754;
Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes -
1219 (source: NCBI BLink).		 1 0.3 -0.3
2 AT1G29450 SAUR-like auxin-responsive protein family 0.83 0.29 -0.3
3 AT5G66590 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.82 0.31 -0.32
4 AT4G03190 GRR1-like protein 1 AUXIN SIGNALING F BOX PROTEIN 1,
ATGRH1, GRR1-like protein 1		 0.81 0.31 -0.31
5 AT1G29440 SAUR-like auxin-responsive protein family 0.81 0.33 -0.33
6 AT1G11545 xyloglucan endotransglucosylase/hydrolase 8 xyloglucan
endotransglucosylase/hydrolase 8		 0.78 0.32 -0.3
7 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 0.77 0.3 -0.32
8 AT1G04250 AUX/IAA transcriptional regulator family protein AUXIN RESISTANT 3, indole-3-acetic
acid inducible 17		 0.77 0.3 -0.31
9 AT5G15580 longifolia1 LONGIFOLIA1 0.76 0.33 -0.33
10 AT1G10030 homolog of yeast ergosterol28 homolog of yeast ergosterol28 0.75 0.3 -0.31
11 AT3G47400 Plant invertase/pectin methylesterase inhibitor superfamily 0.75 0.3 -0.32
12 AT3G12610 Leucine-rich repeat (LRR) family protein DNA-DAMAGE REPAIR/TOLERATION 100 0.74 0.32 -0.31
13 AT2G04780 FASCICLIN-like arabinoogalactan 7 FASCICLIN-like arabinoogalactan 7 0.74 0.33 -0.28
14 AT3G22540 Protein of unknown function (DUF1677) 0.73 0.32 -0.32
15 AT5G11720 Glycosyl hydrolases family 31 protein -0.73 0.31 -0.33
16 AT1G63220 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.73 0.32 -0.32
17 AT2G14890 arabinogalactan protein 9 arabinogalactan protein 9 0.72 0.31 -0.3
18 AT5G25460 Protein of unknown function, DUF642 0.72 0.31 -0.32
19 AT5G39320 UDP-glucose 6-dehydrogenase family protein 0.72 0.32 -0.34
20 AT3G18200 nodulin MtN21 /EamA-like transporter family protein 0.72 0.3 -0.35
21 AT5G49800 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.72 0.33 -0.29
22 AT3G58120 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP61, BZIP61 0.72 0.31 -0.3
23 AT1G45130 beta-galactosidase 5 beta-galactosidase 5 0.71 0.32 -0.28
24 AT5G50375 cyclopropyl isomerase cyclopropyl isomerase 0.71 0.29 -0.33
25 AT3G63130 RAN GTPase activating protein 1 RAN GTPASE-ACTIVATING PROTEIN 1,
RAN GTPase activating protein 1		 0.71 0.33 -0.33
26 AT2G22900 Galactosyl transferase GMA12/MNN10 family protein 0.7 0.3 -0.3
27 AT3G03840 SAUR-like auxin-responsive protein family 0.7 0.31 -0.29
28 AT2G22910 N-acetyl-l-glutamate synthase 1 N-acetyl-l-glutamate synthase 1 -0.7 0.32 -0.29
29 AT5G55480 SHV3-like 1 Glycerophosphodiester
phosphodiesterase (GDPD) like 4,
glycerophosphodiesterase-like 1,
SHV3-like 1		 0.7 0.32 -0.31
30 AT3G06510 Glycosyl hydrolase superfamily protein SENSITIVE TO FREEZING 2, SENSITIVE
TO FREEZING 2		 -0.69 0.32 -0.32
31 AT3G62960 Thioredoxin superfamily protein 0.69 0.32 -0.32
32 AT3G23050 indole-3-acetic acid 7 AUXIN RESISTANT 2, indole-3-acetic
acid 7		 0.69 0.31 -0.31
33 AT3G15540 indole-3-acetic acid inducible 19 indole-3-acetic acid inducible 19,
MASSUGU 2		 0.69 0.3 -0.3
34 AT5G66280 GDP-D-mannose 4,6-dehydratase 1 GDP-D-mannose 4,6-dehydratase 1 0.69 0.3 -0.3
35 AT5G49650 xylulose kinase-2 xylulose kinase-2, XYLULOSE KINASE
2		 -0.68 0.3 -0.32
36 AT5G12040 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 -0.68 0.3 -0.33
37 AT4G04960 Concanavalin A-like lectin protein kinase family protein -0.68 0.3 -0.34
38 AT5G13870 xyloglucan endotransglucosylase/hydrolase 5 endoxyloglucan transferase A4,
xyloglucan
endotransglucosylase/hydrolase 5		 0.68 0.32 -0.29
39 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.32 -0.31
40 AT4G14750 IQ-domain 19 IQ-domain 19 0.68 0.32 -0.32
41 AT3G01200 PPDK regulatory protein 2 PPDK regulatory protein 2, PPDK
regulatory protein 2		 -0.68 0.31 -0.32
42 AT3G05900 neurofilament protein-related 0.68 0.3 -0.3
43 AT1G55160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.33 -0.3
44 AT4G38850 SAUR-like auxin-responsive protein family ARABIDOPSIS THALIANA SMALL AUXIN
UPREGULATED 15, ARABIDOPSIS
COLUMBIA SAUR GENE 1, SMALL AUXIN
UPREGULATED 15, SMALL AUXIN UP RNA
1 FROM ARABIDOPSIS THALIANA
ECOTYPE COLUMBIA		 0.68 0.3 -0.34
45 AT4G39860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits
to 146 proteins in 19 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 0.68 0.31 -0.31
46 AT5G24580 Heavy metal transport/detoxification superfamily protein 0.68 0.3 -0.29
47 AT2G40610 expansin A8 ATEXP8, expansin A8, ATHEXP ALPHA
1.11, EXP8, expansin A8		 0.68 0.3 -0.3
48 AT2G35880 TPX2 (targeting protein for Xklp2) protein family 0.67 0.33 -0.31
49 AT1G65310 xyloglucan endotransglucosylase/hydrolase 17 XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 17,
xyloglucan
endotransglucosylase/hydrolase 17		 0.67 0.31 -0.31
50 AT3G42800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 853 Blast hits
to 340 proteins in 98 species: Archae - 0; Bacteria - 94;
Metazoa - 145; Fungi - 62; Plants - 95; Viruses - 0; Other
Eukaryotes - 457 (source: NCBI BLink).		 0.67 0.31 -0.33
51 AT4G13710 Pectin lyase-like superfamily protein 0.67 0.28 -0.3
52 AT1G80280 alpha/beta-Hydrolases superfamily protein 0.67 0.31 -0.31
53 AT5G25270 Ubiquitin-like superfamily protein -0.67 0.33 -0.31
54 AT5G10260 RAB GTPase homolog H1E RAB GTPase homolog H1E, RAB GTPase
homolog H1E		 0.67 0.3 -0.32
55 AT5G38780 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.67 0.32 -0.34
56 AT3G55005 tonneau 1b (TON1b) tonneau 1b 0.66 0.3 -0.3
57 AT3G46810 Cysteine/Histidine-rich C1 domain family protein 0.66 0.32 -0.31
58 AT1G04240 AUX/IAA transcriptional regulator family protein indole-3-acetic acid inducible 3,
SHORT HYPOCOTYL 2		 0.66 0.3 -0.32
59 AT4G35200 Arabidopsis protein of unknown function (DUF241) 0.66 0.33 -0.34
60 AT1G11000 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 4,
MILDEW RESISTANCE LOCUS O 4		 0.66 0.31 -0.32
61 AT5G26570 catalytics;carbohydrate kinases;phosphoglucan, water
dikinases		 ATGWD3, OK1, PHOSPHOGLUCAN WATER
DIKINASE		 -0.66 0.32 -0.3
62 AT3G23090 TPX2 (targeting protein for Xklp2) protein family 0.66 0.32 -0.33
63 AT1G18720 Protein of unknown function (DUF962) -0.66 0.33 -0.33
64 AT4G18640 Leucine-rich repeat protein kinase family protein morphogenesis of root hair 1 0.66 0.3 -0.31
65 AT5G57770 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 0.65 0.32 -0.32
66 AT4G14560 indole-3-acetic acid inducible AUXIN RESISTANT 5, indole-3-acetic
acid inducible		 0.65 0.32 -0.3
67 AT1G21160 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 -0.65 0.31 -0.31
68 AT5G01450 RING/U-box superfamily protein -0.65 0.31 -0.33
69 AT2G38600 HAD superfamily, subfamily IIIB acid phosphatase 0.65 0.31 -0.31
70 AT5G57360 Galactose oxidase/kelch repeat superfamily protein ADAGIO 1, FKF1-LIKE PROTEIN 2, LOV
KELCH PROTEIN 1, ZEITLUPE		 -0.65 0.33 -0.35
71 AT4G29820 homolog of CFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF
CFIM-25, homolog of CFIM-25		 -0.64 0.34 -0.3
72 AT3G60690 SAUR-like auxin-responsive protein family -0.64 0.33 -0.32
73 AT2G16780 Transducin family protein / WD-40 repeat family protein MSI02, MULTICOPY SUPPRESSOR OF
IRA1 2, NFC02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 2		 0.64 0.32 -0.3
74 AT3G46270 receptor protein kinase-related 0.64 0.33 -0.34
75 AT3G05990 Leucine-rich repeat (LRR) family protein 0.64 0.31 -0.32
76 AT3G27820 monodehydroascorbate reductase 4 MONODEHYDROASCORBATE REDUCTASE 4,
monodehydroascorbate reductase 4		 -0.64 0.31 -0.33
77 AT5G54020 Cysteine/Histidine-rich C1 domain family protein 0.64 0.31 -0.31
78 AT2G46860 pyrophosphorylase 3 pyrophosphorylase 3,
pyrophosphorylase 3		 0.64 0.32 -0.31
79 AT4G04150 transposable element gene -0.63 0.31 -0.3
80 AT3G48970 Heavy metal transport/detoxification superfamily protein 0.63 0.28 -0.32
81 AT5G12940 Leucine-rich repeat (LRR) family protein 0.63 0.29 -0.32
82 AT2G35940 BEL1-like homeodomain 1 BEL1-like homeodomain 1, embryo
sac development arrest 29		 -0.63 0.32 -0.33
83 AT2G17975 zinc finger (Ran-binding) family protein -0.63 0.32 -0.33
84 AT5G49680 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 KINKY POLLEN 0.63 0.28 -0.31
85 AT1G29510 SAUR-like auxin-responsive protein family SMALL AUXIN UPREGULATED 68 0.63 0.32 -0.32
86 AT5G51310 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.63 0.3 -0.33
87 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 -0.63 0.31 -0.32
88 AT2G25740 ATP-dependent protease La (LON) domain protein -0.63 0.32 -0.3
89 AT5G15530 biotin carboxyl carrier protein 2 biotin carboxyl carrier protein 2,
CAC1-B		 0.63 0.3 -0.28
90 AT2G13290 beta-1,4-N-acetylglucosaminyltransferase family protein -0.62 0.32 -0.3
91 AT4G09990 Protein of unknown function (DUF579) 0.62 0.34 -0.32
92 AT5G01610 Protein of unknown function, DUF538 0.62 0.32 -0.33
93 AT5G01780 2-oxoglutarate-dependent dioxygenase family protein -0.62 0.31 -0.31
94 AT3G50430 unknown protein; Has 54 Blast hits to 54 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.62 0.32 -0.31
95 AT4G17460 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein HAT1 0.62 0.33 -0.31
96 AT5G01620 TRICHOME BIREFRINGENCE-LIKE 35 TRICHOME BIREFRINGENCE-LIKE 35 0.62 0.31 -0.33
97 AT3G26290 cytochrome P450, family 71, subfamily B, polypeptide 26 cytochrome P450, family 71,
subfamily B, polypeptide 26		 -0.62 0.31 -0.3
98 AT3G20460 Major facilitator superfamily protein 0.62 0.32 -0.36
99 AT2G17730 NEP-interacting protein 2 NEP-interacting protein 2 -0.61 0.33 -0.32
100 AT5G22470 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases -0.61 0.3 -0.29
101 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 -0.6 0.31 -0.32
102 AT2G24820 translocon at the inner envelope membrane of chloroplasts
55-II		 translocon at the inner envelope
membrane of chloroplasts 55,
translocon at the inner envelope
membrane of chloroplasts 55,
translocon at the inner envelope
membrane of chloroplasts 55-II		 -0.6 0.29 -0.34
103 AT2G14850 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G33890.2); Has 140 Blast hits
to 132 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 2; Plants - 133; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 -0.6 0.3 -0.32
104 AT5G20380 phosphate transporter 4;5 phosphate transporter 4;5 -0.6 0.33 -0.31
105 AT1G69790 Protein kinase superfamily protein -0.59 0.31 -0.31
106 AT5G24316 proline-rich family protein -0.59 0.31 -0.3
107 AT5G06100 myb domain protein 33 ATMYB33, myb domain protein 33 -0.59 0.31 -0.32
108 AT1G62810 Copper amine oxidase family protein -0.59 0.34 -0.31
109 AT2G46560 transducin family protein / WD-40 repeat family protein -0.59 0.33 -0.29
110 AT1G14660 Na+/H+ exchanger 8 Na+/H+ exchanger 8, Na+/H+
exchanger 8, SODIUM HYDROGEN
EXCHANGER 8		 -0.59 0.29 -0.3
111 AT3G24820 BSD domain-containing protein -0.59 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
112 C0050 8-Methylthio-n-octylglucosinolate - 8-Methylthiooctyl glucosinolate glucosinolate biosynthesis from hexahomomethionine 0.77 0.42 -0.44 C0050