AT3G63140 : chloroplast stem-loop binding protein of 41 kDa.....
Query Information
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AGICode AT3G63140
Description chloroplast stem-loop binding protein of 41 kDa
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G63140 chloroplast stem-loop binding protein of 41 kDa chloroplast stem-loop binding
protein of 41 kDa		 1 0.33 -0.3
2 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit glyceraldehyde-3-phosphate
dehydrogenase B subunit		 0.94 0.31 -0.32
3 AT2G01590 chlororespiratory reduction 3 CHLORORESPIRATORY REDUCTION 3 0.94 0.33 -0.31
4 AT5G42070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.94 0.32 -0.32
5 AT1G74880 NAD(P)H:plastoquinone dehydrogenase complex subunit O NAD(P)H:plastoquinone
dehydrogenase complex subunit O,
NADH dehydrogenase-like complex )		 0.93 0.32 -0.32
6 AT1G09340 chloroplast RNA binding chloroplast RNA binding,
CHLOROPLAST STEM-LOOP BINDING
PROTEIN OF 41 KDA,
heteroglycan-interacting protein
1.3		 0.92 0.31 -0.3 IDA
7 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.92 0.31 -0.31
8 AT1G32080 membrane protein, putative AtLrgB, LrgB 0.92 0.31 -0.31
9 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.91 0.3 -0.33
10 AT3G02730 thioredoxin F-type 1 ATF1, thioredoxin F-type 1 0.91 0.31 -0.32
11 AT5G39210 chlororespiratory reduction 7 CHLORORESPIRATORY REDUCTION 7 0.9 0.3 -0.33
12 AT4G32260 ATPase, F0 complex, subunit B/B', bacterial/chloroplast PIGMENT DEFECTIVE 334 0.9 0.33 -0.31
13 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.9 0.31 -0.34
14 AT3G01500 carbonic anhydrase 1 BETA CARBONIC ANHYDRASE 1,
ARABIDOPSIS THALIANA SALICYLIC
ACID-BINDING PROTEIN 3, carbonic
anhydrase 1, SALICYLIC
ACID-BINDING PROTEIN 3		 0.9 0.32 -0.31
15 AT3G54050 high cyclic electron flow 1 high cyclic electron flow 1 0.9 0.32 -0.3
16 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or
similar compound as acceptor		 NADH dehydrogenase-like complex N 0.9 0.3 -0.33
17 AT2G39470 PsbP-like protein 2 Photosynthetic NDH subcomplex L
1, PsbP-like protein 2		 0.9 0.34 -0.3
18 AT1G70760 inorganic carbon transport protein-related CHLORORESPIRATORY REDUCTION 23,
NADH dehydrogenase-like complex L		 0.9 0.3 -0.32
19 AT3G55800 sedoheptulose-bisphosphatase sedoheptulose-bisphosphatase 0.9 0.3 -0.32
20 AT1G20020 ferredoxin-NADP(+)-oxidoreductase 2 LEAF FNR 2,
ferredoxin-NADP(+)-oxidoreductase
2		 0.89 0.31 -0.33
21 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.89 0.32 -0.33
22 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.89 0.33 -0.32
23 AT2G21370 xylulose kinase-1 xylulose kinase-1, XYLULOSE KINASE
1		 0.89 0.32 -0.3
24 AT1G11860 Glycine cleavage T-protein family 0.89 0.3 -0.33
25 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.89 0.31 -0.32
26 AT3G01440 PsbQ-like 1 Photosynthetic NDH subcomplex L
3, PsbQ-like 1, PsbQ-like 2		 0.88 0.33 -0.31
27 AT1G14150 PsbQ-like 2 Photosynthetic NDH subcomplex L
2, PsbQ-like 1, PsbQ-like 2		 0.88 0.32 -0.31
28 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.88 0.3 -0.34
29 AT5G43750 NAD(P)H dehydrogenase 18 NAD(P)H dehydrogenase 18,
Photosynthetic NDH subcomplex B 5		 0.88 0.31 -0.31
30 AT5G14740 carbonic anhydrase 2 BETA CARBONIC ANHYDRASE 2,
CARBONIC ANHYDRASE 18, carbonic
anhydrase 2		 0.88 0.34 -0.33
31 AT1G26230 TCP-1/cpn60 chaperonin family protein chaperonin-60beta4 0.88 0.31 -0.3
32 AT5G19220 ADP glucose pyrophosphorylase large subunit 1 ADP GLUCOSE PYROPHOSPHORYLASE 2,
ADP glucose pyrophosphorylase
large subunit 1		 0.88 0.3 -0.33
33 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.88 0.33 -0.33
34 AT5G52100 Dihydrodipicolinate reductase, bacterial/plant chlororespiration reduction 1 0.88 0.33 -0.29
35 AT5G08650 Small GTP-binding protein 0.88 0.32 -0.31
36 AT1G14030 Rubisco methyltransferase family protein 0.88 0.33 -0.31
37 AT3G16250 NDH-dependent cyclic electron flow 1 NDH-dependent cyclic electron flow
1, Photosynthetic NDH subcomplex
B 3		 0.87 0.34 -0.31
38 AT1G49975 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I,
chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Photosystem I reaction centre subunit N
(InterPro:IPR008796); Has 34 Blast hits to 34 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.87 0.31 -0.31
39 AT1G76450 Photosystem II reaction center PsbP family protein 0.87 0.3 -0.35
40 AT5G35630 glutamine synthetase 2 GLUTAMINE SYNTHETASE LIKE 1,
GLUTAMINE SYNTHETASE 2, glutamine
synthetase 2		 0.87 0.3 -0.32
41 AT5G66530 Galactose mutarotase-like superfamily protein 0.87 0.32 -0.3
42 AT5G09660 peroxisomal NAD-malate dehydrogenase 2 peroxisomal NAD-malate
dehydrogenase 2		 0.87 0.32 -0.32
43 AT1G18060 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74
proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa
- 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes
- 6 (source: NCBI BLink).		 0.87 0.33 -0.3
44 AT3G15360 thioredoxin M-type 4 ATHM4, ARABIDOPSIS THIOREDOXIN
M-TYPE 4, thioredoxin M-type 4		 0.87 0.31 -0.32
45 AT4G33470 histone deacetylase 14 ATHDA14, histone deacetylase 14 0.87 0.3 -0.31
46 AT3G56650 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 0.87 0.3 -0.31
47 AT1G15980 NDH-dependent cyclic electron flow 1 NDH-dependent cyclic electron flow
1, NAD(P)H DEHYDROGENASE SUBUNIT
48, Photosynthetic NDH subcomplex
B 1		 0.87 0.31 -0.33
48 AT2G04039 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2996
(InterPro:IPR021374); Has 159 Blast hits to 159 proteins in
52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi -
0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source:
NCBI BLink).		 0.87 0.3 -0.32
49 AT4G12830 alpha/beta-Hydrolases superfamily protein 0.87 0.33 -0.3
50 AT3G24430 ATP binding HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.87 0.32 -0.32
51 AT3G53130 Cytochrome P450 superfamily protein CYTOCHROME P450 97C1, LUTEIN
DEFICIENT 1		 0.87 0.31 -0.31
52 AT4G34090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.87 0.33 -0.3
53 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.87 0.3 -0.31
54 AT5G54270 light-harvesting chlorophyll B-binding protein 3 light-harvesting chlorophyll
B-binding protein 3, LHCB3*1		 0.87 0.34 -0.32
55 AT4G38430 rho guanyl-nucleotide exchange factor 1 ATROPGEF1, rho guanyl-nucleotide
exchange factor 1		 0.86 0.32 -0.3
56 AT4G04890 protodermal factor 2 protodermal factor 2 0.86 0.32 -0.29
57 AT4G01150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast,
plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in
59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi
- 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10
(source: NCBI BLink).		 0.86 0.32 -0.3
58 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.86 0.31 -0.31
59 AT1G60800 NSP-interacting kinase 3 NSP-interacting kinase 3 0.86 0.33 -0.31
60 AT3G50685 unknown protein; Has 52 Blast hits to 46 proteins in 20
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 0.86 0.34 -0.32
61 AT5G47380 Protein of unknown function, DUF547 0.86 0.31 -0.33
62 AT2G47590 photolyase/blue-light receptor 2 photolyase/blue-light receptor 2 0.86 0.32 -0.33
63 AT4G33010 glycine decarboxylase P-protein 1 glycine decarboxylase P-protein 1,
glycine decarboxylase P-protein 1		 0.86 0.34 -0.31
64 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.86 0.3 -0.34
65 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.86 0.31 -0.3
66 AT3G54890 photosystem I light harvesting complex gene 1 photosystem I light harvesting
complex gene 1		 0.85 0.31 -0.31
67 AT1G19150 photosystem I light harvesting complex gene 6 LHCA2*1, photosystem I light
harvesting complex gene 6		 0.85 0.3 -0.28
68 AT4G37930 serine transhydroxymethyltransferase 1 serine
transhydroxymethyltransferase 1,
SERINE HYDROXYMETHYLTRANSFERASE 1,
SERINE
TRANSHYDROXYMETHYLTRANSFERASE		 0.85 0.3 -0.31
69 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.85 0.34 -0.3
70 AT2G26910 pleiotropic drug resistance 4 ATP-binding cassette G32,
PLEIOTROPIC DRUG RESISTANCE 4,
pleiotropic drug resistance 4,
PERMEABLE CUTICLE 1		 0.85 0.32 -0.32
71 AT3G10840 alpha/beta-Hydrolases superfamily protein 0.85 0.32 -0.31
72 AT3G12780 phosphoglycerate kinase 1 phosphoglycerate kinase 1 0.85 0.31 -0.33
73 AT5G02120 one helix protein one helix protein, PIGMENT
DEFECTIVE 335		 0.85 0.32 -0.32
74 AT3G25660 Amidase family protein 0.85 0.31 -0.33
75 AT1G64680 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits
to 146 proteins in 26 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 0.85 0.3 -0.33
76 AT3G44020 thylakoid lumenal P17.1 protein 0.85 0.31 -0.28
77 AT5G23120 photosystem II stability/assembly factor, chloroplast
(HCF136)		 HIGH CHLOROPHYLL FLUORESCENCE 136 0.85 0.31 -0.32
78 AT1G80030 Molecular chaperone Hsp40/DnaJ family protein 0.85 0.31 -0.31
79 AT5G59250 Major facilitator superfamily protein 0.85 0.31 -0.33
80 AT2G42600 phosphoenolpyruvate carboxylase 2 phosphoenolpyruvate carboxylase 2,
phosphoenolpyruvate carboxylase 2		 0.85 0.33 -0.32
81 AT2G32500 Stress responsive alpha-beta barrel domain protein 0.85 0.35 -0.31
82 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.84 0.32 -0.33
83 AT3G17820 glutamine synthetase 1.3 ARABIDOPSIS THALIANA GLUTAMINE
SYNTHASE CLONE KB6, glutamine
synthetase 1.3, GLUTAMINE
SYNTHETASE 1;3		 -0.83 0.28 -0.29
84 AT3G14990 Class I glutamine amidotransferase-like superfamily protein DJ-1 homolog A, DJ-1 homolog A -0.82 0.31 -0.33
85 AT1G63840 RING/U-box superfamily protein -0.82 0.31 -0.32
86 AT1G29330 ER lumen protein retaining receptor family protein ARABIDOPSIS ENDOPLASMIC RETICULUM
RETENTION DEFECTIVE 2, ARABIDOPSIS
THALIANA ENDOPLASMIC RETICULUM
RETENTION DEFECTIVE 2, ENDOPLASMIC
RETICULUM RETENTION DEFECTIVE 2		 -0.81 0.28 -0.32
87 AT3G14060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits
to 30 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.79 0.32 -0.33
88 AT2G32660 receptor like protein 22 receptor like protein 22, receptor
like protein 22		 -0.79 0.32 -0.32
89 AT1G10140 Uncharacterised conserved protein UCP031279 -0.79 0.29 -0.32
90 AT5G06750 Protein phosphatase 2C family protein -0.79 0.32 -0.32
91 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.78 0.31 -0.31
92 AT2G25910 3'-5' exonuclease domain-containing protein / K homology
domain-containing protein / KH domain-containing protein		 -0.78 0.32 -0.34
93 AT2G42790 citrate synthase 3 citrate synthase 3 -0.78 0.31 -0.31
94 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.78 0.29 -0.31
95 AT4G19880 Glutathione S-transferase family protein -0.77 0.3 -0.33
96 AT1G60420 DC1 domain-containing protein -0.77 0.33 -0.32
97 AT2G22330 cytochrome P450, family 79, subfamily B, polypeptide 3 cytochrome P450, family 79,
subfamily B, polypeptide 3		 -0.77 0.34 -0.31
98 AT3G06860 multifunctional protein 2 MULTIFUNCTIONAL PROTEIN 2,
multifunctional protein 2		 -0.76 0.31 -0.32
99 AT4G34180 Cyclase family protein -0.76 0.32 -0.31
100 AT3G57380 Glycosyltransferase family 61 protein -0.76 0.32 -0.33
101 AT4G31500 cytochrome P450, family 83, subfamily B, polypeptide 1 ALTERED TRYPTOPHAN REGULATION 4,
cytochrome P450, family 83,
subfamily B, polypeptide 1, RED
ELONGATED 1, RUNT 1, SUPERROOT 2		 -0.75 0.33 -0.31
102 AT4G35630 phosphoserine aminotransferase phosphoserine aminotransferase -0.75 0.31 -0.32
103 AT1G09560 germin-like protein 5 germin-like protein 5 -0.75 0.32 -0.31
104 AT5G65020 annexin 2 annexin 2 -0.75 0.33 -0.33
105 AT5G58375 Methyltransferase-related protein -0.74 0.3 -0.31
106 AT1G22360 UDP-glucosyl transferase 85A2 UDP-glucosyl transferase 85A2,
UDP-glucosyl transferase 85A2		 -0.74 0.3 -0.31
107 AT3G45130 lanosterol synthase 1 lanosterol synthase 1 -0.73 0.33 -0.31
108 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.73 0.31 -0.31
109 AT3G26590 MATE efflux family protein -0.73 0.3 -0.31
110 AT3G62580 Late embryogenesis abundant protein (LEA) family protein -0.73 0.34 -0.32
111 AT5G45410 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits
to 124 proteins in 34 species: Archae - 2; Bacteria - 31;
Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.29 -0.3
112 AT1G54030 GDSL-like Lipase/Acylhydrolase superfamily protein GOLGI DEFECTS 36, MODIFIED VACUOLE
PHENOTYPE 1		 -0.73 0.32 -0.3
113 AT1G79690 nudix hydrolase homolog 3 nudix hydrolase homolog 3, nudix
hydrolase homolog 3		 -0.73 0.31 -0.34
114 AT2G33630 NAD(P)-binding Rossmann-fold superfamily protein -0.72 0.31 -0.31
115 AT4G35830 aconitase 1 aconitase 1 -0.72 0.32 -0.3
116 AT3G44720 arogenate dehydratase 4 arogenate dehydratase 4 -0.72 0.32 -0.31
117 AT2G43510 trypsin inhibitor protein 1 trypsin inhibitor protein 1,
trypsin inhibitor protein 1		 -0.72 0.31 -0.32
118 AT1G77000 RNI-like superfamily protein ARABIDOPSIS HOMOLOG OF HOMOLOG OF
HUMAN SKP2 2, SKP2B		 -0.72 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
119 C0253 Threonic acid-1,4-lactone D,L-Threonic acid-1,4-lactone - - 0.85 0.44 -0.42