AT3G56010 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G56010
Description unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 1 0.31 -0.33
2 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.94 0.31 -0.3
3 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.93 0.33 -0.29
4 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.91 0.33 -0.31
5 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.91 0.32 -0.3
6 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.91 0.32 -0.32
7 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.91 0.33 -0.32
8 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.9 0.29 -0.33
9 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.9 0.31 -0.35
10 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.9 0.33 -0.32
11 AT3G04760 Pentatricopeptide repeat (PPR-like) superfamily protein 0.9 0.36 -0.29
12 AT2G26500 cytochrome b6f complex subunit (petM), putative 0.9 0.32 -0.32
13 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.9 0.31 -0.29
14 AT4G04640 ATPase, F1 complex, gamma subunit protein ATPC1 0.9 0.31 -0.33
15 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.9 0.32 -0.3
16 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.89 0.31 -0.3
17 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.89 0.3 -0.3
18 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.89 0.31 -0.31
19 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.89 0.3 -0.3
20 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.34 -0.31
21 AT3G20230 Ribosomal L18p/L5e family protein 0.89 0.33 -0.32
22 AT5G08050 Protein of unknown function (DUF1118) 0.89 0.3 -0.32
23 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.32 -0.32
24 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.32 -0.3
25 AT4G03280 photosynthetic electron transfer C photosynthetic electron transfer
C, PROTON GRADIENT REGULATION 1		 0.88 0.32 -0.31
26 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.88 0.33 -0.32
27 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.88 0.28 -0.3
28 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein AtPLR1, pyridoxal reductase 1 0.88 0.31 -0.3
29 AT1G30380 photosystem I subunit K photosystem I subunit K 0.88 0.3 -0.32
30 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.88 0.31 -0.33
31 AT1G70730 Phosphoglucomutase/phosphomannomutase family protein phosphoglucomutase 2 0.88 0.32 -0.31
32 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 42 Blast hits to 42 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.88 0.32 -0.34
33 AT2G06520 photosystem II subunit X photosystem II subunit X 0.88 0.31 -0.31
34 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.29 -0.3
35 AT1G03680 thioredoxin M-type 1 thioredoxin M-type 1, ARABIDOPSIS
THIOREDOXIN M-TYPE 1, thioredoxin
M-type 1, THIOREDOXIN M-TYPE 1		 0.88 0.32 -0.31
36 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.88 0.31 -0.32
37 AT1G76450 Photosystem II reaction center PsbP family protein 0.87 0.35 -0.31
38 AT3G21055 photosystem II subunit T photosystem II subunit T 0.87 0.31 -0.31
39 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.87 0.32 -0.31
40 AT5G48220 Aldolase-type TIM barrel family protein 0.87 0.31 -0.31
41 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.87 0.31 -0.3
42 AT1G22630 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages; Has
87 Blast hits to 86 proteins in 34 species: Archae - 0;
Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.87 0.32 -0.29
43 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.87 0.31 -0.32
44 AT1G55670 photosystem I subunit G photosystem I subunit G 0.87 0.31 -0.32
45 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.87 0.3 -0.33
46 AT1G77090 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 0.86 0.33 -0.29
47 AT4G10340 light harvesting complex of photosystem II 5 light harvesting complex of
photosystem II 5		 0.86 0.31 -0.31
48 AT5G66470 RNA binding;GTP binding 0.86 0.35 -0.32
49 AT1G05140 Peptidase M50 family protein 0.86 0.33 -0.29
50 AT1G35420 alpha/beta-Hydrolases superfamily protein 0.86 0.32 -0.32
51 AT1G50575 Putative lysine decarboxylase family protein 0.85 0.29 -0.32
52 AT5G42310 Pentatricopeptide repeat (PPR-like) superfamily protein 0.85 0.3 -0.33
53 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.85 0.33 -0.32
54 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.85 0.31 -0.31
55 AT3G19220 protein disulfide isomerases SHI-YO-U MEANS COTYLEDON IN
JAPANESE, SNOWY COTYLEDON 2		 0.85 0.31 -0.32
56 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.85 0.29 -0.31
57 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.85 0.33 -0.32
58 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.85 0.31 -0.31
59 AT5G02170 Transmembrane amino acid transporter family protein -0.76 0.32 -0.31
60 AT5G47050 SBP (S-ribonuclease binding protein) family protein -0.75 0.32 -0.31
61 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.75 0.32 -0.32
62 AT2G44500 O-fucosyltransferase family protein -0.75 0.33 -0.29
63 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.74 0.31 -0.34
64 AT2G06255 ELF4-like 3 ELF4-like 3 -0.74 0.32 -0.31
65 AT3G24550 proline extensin-like receptor kinase 1 proline-rich extensin-like
receptor kinase 1, proline-rich
extensin-like receptor kinase 1		 -0.73 0.33 -0.3
66 AT5G35200 ENTH/ANTH/VHS superfamily protein -0.71 0.33 -0.31
67 AT3G50650 GRAS family transcription factor -0.7 0.31 -0.31
68 AT4G14350 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 -0.69 0.31 -0.3
69 AT5G35080 INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Mannose-6-phosphate receptor, binding
(InterPro:IPR009011), Glucosidase II beta subunit-like
(InterPro:IPR012913); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.68 0.32 -0.33
70 AT4G10390 Protein kinase superfamily protein -0.68 0.32 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
71 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.8 0.43 -0.44 C0051