AT3G54000 : -
Query Information
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AGICode AT3G54000
Description CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54000 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 1 0.31 -0.32
2 AT2G30040 mitogen-activated protein kinase kinase kinase 14 mitogen-activated protein kinase
kinase kinase 14		 0.71 0.32 -0.33
3 AT4G39790 Protein of unknown function (DUF630 and DUF632) 0.68 0.31 -0.32
4 AT5G06800 myb-like HTH transcriptional regulator family protein 0.68 0.31 -0.31
5 AT2G46340 SPA (suppressor of phyA-105) protein family SUPPRESSOR OF PHYA-105 1 -0.67 0.34 -0.31
6 AT2G26710 Cytochrome P450 superfamily protein PHYB ACTIVATION TAGGED SUPPRESSOR
1, CYP72B1, CYP734A1		 0.67 0.34 -0.3
7 AT2G47860 Phototropic-responsive NPH3 family protein SETH6 0.67 0.34 -0.32
8 AT3G02885 GAST1 protein homolog 5 GAST1 protein homolog 5 0.67 0.31 -0.32
9 AT4G18610 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 9 0.66 0.33 -0.32
10 AT1G28400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins
in 668 species: Archae - 72; Bacteria - 1460; Metazoa -
1191; Fungi - 1038; Plants - 174; Viruses - 64; Other
Eukaryotes - 41375 (source: NCBI BLink).		 0.66 0.31 -0.33
11 AT4G02290 glycosyl hydrolase 9B13 glycosyl hydrolase 9B13, glycosyl
hydrolase 9B13		 0.66 0.31 -0.31
12 AT1G60060 Serine/threonine-protein kinase WNK (With No
Lysine)-related		 -0.65 0.3 -0.33
13 AT3G57950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 4 anthesis, C globular stage, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast
hits to 81 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.65 0.32 -0.33
14 AT1G28290 arabinogalactan protein 31 arabinogalactan protein 31 0.65 0.31 -0.31
15 AT1G78620 Protein of unknown function DUF92, transmembrane -0.65 0.32 -0.3
16 AT5G53090 NAD(P)-binding Rossmann-fold superfamily protein 0.64 0.32 -0.31
17 AT3G20830 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 0.64 0.3 -0.32
18 AT1G65410 non-intrinsic ABC protein 11 ATP-binding cassette I13,
non-intrinsic ABC protein 11,
non-intrinsic ABC protein 11,
TRIGALACTOSYLDIACYLGLYCEROL 3		 -0.64 0.3 -0.32
19 AT5G02590 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.33 -0.3
20 AT3G51250 Senescence/dehydration-associated protein-related -0.63 0.32 -0.32
21 AT2G32040 Major facilitator superfamily protein -0.63 0.33 -0.32
22 AT3G46980 phosphate transporter 4;3 phosphate transporter 4;3 -0.63 0.3 -0.31
23 AT2G35480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G32260.1); Has 47 Blast
hits to 47 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.33 -0.3
24 AT5G24520 Transducin/WD40 repeat-like superfamily protein TRANSPARENT TESTA GLABRA 1, TTG,
TRANSPARENT TESTA GLABRA 1,
UNARMED 23		 -0.63 0.33 -0.31
25 AT4G00630 K+ efflux antiporter 2 ATKEA2, K+ efflux antiporter 2 -0.62 0.3 -0.3
26 AT5G23890 LOCATED IN: mitochondrion, chloroplast thylakoid membrane,
chloroplast, plastid, chloroplast envelope; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G52410.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.62 0.33 -0.29
27 AT5G17350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.61 0.33 -0.33
28 AT1G69340 appr-1-p processing enzyme family protein -0.61 0.32 -0.32
29 AT5G43940 GroES-like zinc-binding dehydrogenase family protein ALCOHOL DEHYDROGENASE 2, ATGSNOR1,
S-NITROSOGLUTATHIONE REDUCTASE,
sensitive to hot temperatures 5,
PARAQUAT RESISTANT 2		 -0.61 0.31 -0.34
30 AT3G28140 RNA ligase/cyclic nucleotide phosphodiesterase family
protein		 -0.6 0.3 -0.33
31 AT2G46960 cytochrome P450, family 709, subfamily B, polypeptide 1 cytochrome P450, family 709,
subfamily B, polypeptide 1		 -0.6 0.31 -0.31
32 AT5G56270 WRKY DNA-binding protein 2 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 2, WRKY
DNA-binding protein 2		 -0.6 0.32 -0.32
33 AT3G06830 Plant invertase/pectin methylesterase inhibitor superfamily -0.6 0.34 -0.32
34 AT1G62500 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.6 0.33 -0.32
35 AT2G01830 CHASE domain containing histidine kinase protein ARABIDOPSIS HISTIDINE KINASE 4,
ATCRE1, CYTOKININ RESPONSE 1,
WOODEN LEG, WOODEN LEG 1		 0.6 0.33 -0.33
36 AT3G18080 B-S glucosidase 44 B-S glucosidase 44 -0.59 0.32 -0.31
37 AT2G37920 copper ion transmembrane transporters embryo defective 1513 -0.59 0.29 -0.29
38 AT1G02560 nuclear encoded CLP protease 5 nuclear encoded CLP protease 5,
NUCLEAR-ENCODED CLPP 1, NUCLEAR
CLPP 5		 -0.59 0.3 -0.33
39 AT4G39570 Galactose oxidase/kelch repeat superfamily protein 0.59 0.3 -0.3
40 AT2G26040 PYR1-like 2 PYR1-like 2, regulatory components
of ABA receptor 14		 0.59 0.28 -0.31
41 AT2G39750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.59 0.34 -0.31
42 AT1G28130 Auxin-responsive GH3 family protein GH3.17 0.59 0.33 -0.31
43 AT1G03250 unknown protein; Has 89 Blast hits to 89 proteins in 31
species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 -0.59 0.34 -0.31
44 AT5G44350 ethylene-responsive nuclear protein -related 0.59 0.3 -0.32
45 AT1G04250 AUX/IAA transcriptional regulator family protein AUXIN RESISTANT 3, indole-3-acetic
acid inducible 17		 0.59 0.31 -0.33
46 AT1G71695 Peroxidase superfamily protein -0.59 0.33 -0.32
47 AT1G71980 Protease-associated (PA) RING/U-box zinc finger family
protein		 -0.58 0.34 -0.31
48 AT3G05180 GDSL-like Lipase/Acylhydrolase superfamily protein -0.58 0.34 -0.31
49 AT2G35150 EXORDIUM like 1 EXORDIUM LIKE 7 0.58 0.31 -0.3
50 AT1G24490 OxaA/YidC-like membrane insertion protein ALBINA 4, ARABIDOPSIS THALIANA
ENVELOPE MEMBRANE INTEGRASE		 -0.58 0.32 -0.31
51 AT4G37590 Phototropic-responsive NPH3 family protein MAB4/ENP/NPY1-LIKE 1, NAKED PINS
IN YUC MUTANTS 5		 0.57 0.3 -0.32
52 AT5G45960 GDSL-like Lipase/Acylhydrolase superfamily protein -0.57 0.3 -0.31
53 AT3G57790 Pectin lyase-like superfamily protein -0.57 0.3 -0.31
54 AT2G27170 Structural maintenance of chromosomes (SMC) family protein STRUCTURAL MAINTENANCE OF
CHROMOSOMES 3, TITAN7		 -0.57 0.32 -0.33
55 AT4G27900 CCT motif family protein -0.57 0.33 -0.33
56 AT1G16190 Rad23 UV excision repair protein family RADIATION SENSITIVE23A 0.57 0.31 -0.29
57 AT5G63860 Regulator of chromosome condensation (RCC1) family protein UVB-RESISTANCE 8 -0.57 0.32 -0.32
58 AT1G53830 pectin methylesterase 2 pectin methylesterase 2, pectin
methylesterase 2		 0.56 0.31 -0.33
59 AT4G31750 HOPW1-1-interacting 2 HOPW1-1-interacting 2 0.56 0.3 -0.33
60 AT4G16845 VEFS-Box of polycomb protein REDUCED VERNALIZATION RESPONSE 2 -0.56 0.32 -0.33
61 AT5G25475 AP2/B3-like transcriptional factor family protein 0.56 0.31 -0.31
62 AT3G16490 IQ-domain 26 IQ-domain 26 0.56 0.32 -0.31
63 AT1G53860 Remorin family protein 0.56 0.31 -0.32
64 AT1G58420 Uncharacterised conserved protein UCP031279 0.56 0.31 -0.3
65 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 0.56 0.3 -0.31
66 AT4G37770 1-amino-cyclopropane-1-carboxylate synthase 8 1-amino-cyclopropane-1-carboxylate
synthase 8		 0.56 0.32 -0.31
67 AT4G01410 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.56 0.31 -0.33
68 AT3G61840 Protein of unknown function (DUF688) -0.55 0.31 -0.31
69 AT3G58970 magnesium transporter 6 magnesium transporter 6, MRS2-4 -0.55 0.3 -0.31
70 AT3G24520 heat shock transcription factor C1 AT-HSFC1, heat shock transcription
factor C1		 0.55 0.33 -0.31
71 AT2G43180 Phosphoenolpyruvate carboxylase family protein -0.55 0.32 -0.3
72 AT3G20160 Terpenoid synthases superfamily protein 0.55 0.31 -0.31
73 AT5G62770 Protein of unknown function (DUF1645) 0.55 0.31 -0.32
74 AT4G25540 homolog of DNA mismatch repair protein MSH3 ATMSH3, homolog of DNA mismatch
repair protein MSH3		 0.54 0.32 -0.31
75 AT5G34460 transposable element gene -0.54 0.33 -0.33
76 AT3G53550 FBD-like domain family protein 0.54 0.31 -0.31
77 AT2G43950 chloroplast outer envelope protein 37 ARABIDOPSIS CHLOROPLAST OUTER
ENVELOPE PROTEIN 37, chloroplast
outer envelope protein 37		 -0.54 0.29 -0.3
78 AT1G80010 FAR1-related sequence 8 FAR1-related sequence 8 -0.54 0.3 -0.33
79 AT2G35170 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 0.54 0.31 -0.32
80 AT2G39170 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function NEP (InterPro:IPR019320); Has 57 Blast
hits to 57 proteins in 26 species: Archae - 0; Bacteria -
0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 -0.54 0.29 -0.33
81 AT3G47590 alpha/beta-Hydrolases superfamily protein -0.53 0.34 -0.32
82 AT4G26510 uridine kinase-like 4 uridine kinase-like 4 -0.53 0.32 -0.31
83 AT5G40460 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits
to 87 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.53 0.34 -0.32
84 AT5G13530 protein kinases;ubiquitin-protein ligases KEEP ON GOING -0.53 0.31 -0.32
85 AT3G13650 Disease resistance-responsive (dirigent-like protein)
family protein		 0.53 0.3 -0.31
86 AT2G29900 Presenilin-2 Presenilin-2 -0.53 0.34 -0.32
87 AT4G16610 C2H2-like zinc finger protein 0.53 0.32 -0.31
88 AT5G10220 annexin 6 annexin 6, ANNEXIN ARABIDOPSIS
THALIANA 6		 0.53 0.31 -0.32
89 AT4G26630 DEK domain-containing chromatin associated protein -0.53 0.27 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
90 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.74 0.47 -0.45 C0073