AT3G53920 : SIGMA FACTOR 3
Query Information
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AGICode AT3G53920
Description RNApolymerase sigma-subunit C
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G53920 RNApolymerase sigma-subunit C SIGMA FACTOR 3, RNApolymerase
sigma-subunit C		 1 0.31 -0.3
2 AT5G25630 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.29 -0.31
3 AT5G27730 Protein of unknown function (DUF1624) 0.86 0.32 -0.31
4 AT3G18500 DNAse I-like superfamily protein 0.84 0.32 -0.33
5 AT5G56850 unknown protein; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.83 0.32 -0.3
6 AT2G23390 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase
(InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins
in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0;
Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes -
1088 (source: NCBI BLink).		 0.8 0.33 -0.33
7 AT2G02410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF901 (InterPro:IPR010298); Has 1151
Blast hits to 1151 proteins in 597 species: Archae - 0;
Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.8 0.32 -0.32
8 AT1G76570 Chlorophyll A-B binding family protein 0.79 0.3 -0.32
9 AT1G64430 Pentatricopeptide repeat (PPR) superfamily protein 0.79 0.33 -0.31
10 AT1G23310 glutamate:glyoxylate aminotransferase ALANINE-2-OXOGLUTARATE
AMINOTRANSFERASE 1,
GLUTAMATE:GLYOXYLATE
AMINOTRANSFERASE 1,
glutamate:glyoxylate
aminotransferase		 0.79 0.32 -0.31
11 AT4G33500 Protein phosphatase 2C family protein 0.78 0.3 -0.33
12 AT1G20540 Transducin/WD40 repeat-like superfamily protein 0.78 0.31 -0.3
13 AT4G27800 thylakoid-associated phosphatase 38 PROTEIN PHOSPHATASE 1,
thylakoid-associated phosphatase
38		 0.78 0.33 -0.33
14 AT2G38460 iron regulated 1 ARABIDOPSIS THALIANA
IRON-REGULATED PROTEIN 1,
FERROPORTIN 1, iron regulated 1		 0.78 0.28 -0.3
15 AT1G43670 Inositol monophosphatase family protein Arabidopsis thaliana cytosolic
fructose-1,6-bisphosphatase,
fructose-1,6-bisphosphatase,
FRUCTOSE INSENSITIVE 1		 0.78 0.32 -0.31
16 AT4G17360 Formyl transferase 0.78 0.33 -0.31
17 AT3G46590 TRF-like 1 ATTRP2, TRF-like 1, TRP2 0.78 0.31 -0.31
18 AT3G55630 DHFS-FPGS homolog D DHFS-FPGS homolog D, DHFS-FPGS
homolog D, folylpolyglutamate
synthetase 3		 0.77 0.32 -0.32
19 AT3G28760 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate
synthase, prokaryotic-type (InterPro:IPR002812); Has 390
Blast hits to 390 proteins in 131 species: Archae - 144;
Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54;
Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).		 0.77 0.33 -0.32
20 AT3G47430 peroxin 11B peroxin 11B 0.77 0.3 -0.32
21 AT2G38780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi
- 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink).		 0.77 0.31 -0.29
22 AT3G01370 CRM family member 2 Arabidopsis thaliana CRM family
member 2, CRM family member 2		 0.77 0.29 -0.32
23 AT5G17660 tRNA (guanine-N-7) methyltransferase 0.77 0.32 -0.34
24 AT5G65685 UDP-Glycosyltransferase superfamily protein 0.76 0.33 -0.32
25 AT1G68660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 0.76 0.31 -0.34
26 AT1G70820 phosphoglucomutase, putative / glucose phosphomutase,
putative		 0.76 0.32 -0.34
27 AT2G31390 pfkB-like carbohydrate kinase family protein -0.76 0.29 -0.32
28 AT1G17100 SOUL heme-binding family protein 0.76 0.3 -0.33
29 AT3G27925 DegP protease 1 DegP protease 1, DegP protease 1 0.75 0.33 -0.33
30 AT1G07110 fructose-2,6-bisphosphatase ATF2KP,
fructose-2,6-bisphosphatase, FKFBP		 0.75 0.32 -0.32
31 AT1G74180 receptor like protein 14 receptor like protein 14, receptor
like protein 14		 0.75 0.32 -0.31
32 AT4G39390 nucleotide sugar transporter-KT 1 A. THALIANA NUCLEOTIDE SUGAR
TRANSPORTER-KT 1, nucleotide sugar
transporter-KT 1		 -0.75 0.33 -0.33
33 AT3G03050 cellulose synthase-like D3 CELLULOSE SYNTHASE LIKE D3,
cellulose synthase-like D3, KOJAK,
ROOT HAIR DEFECTIVE 7		 -0.75 0.34 -0.31
34 AT2G03390 uvrB/uvrC motif-containing protein 0.75 0.33 -0.31
35 AT4G28025 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.75 0.32 -0.32
36 AT2G45740 peroxin 11D peroxin 11D 0.75 0.33 -0.32
37 AT5G05200 Protein kinase superfamily protein 0.75 0.3 -0.3
38 AT1G26150 proline-rich extensin-like receptor kinase 10 proline-rich extensin-like
receptor kinase 10, proline-rich
extensin-like receptor kinase 10		 0.74 0.31 -0.31
39 AT2G24270 aldehyde dehydrogenase 11A3 aldehyde dehydrogenase 11A3 0.74 0.33 -0.31
40 AT5G18100 copper/zinc superoxide dismutase 3 copper/zinc superoxide dismutase 3 0.74 0.32 -0.32
41 AT5G58140 phototropin 2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE,
phototropin 2		 0.74 0.31 -0.32
42 AT1G65070 DNA mismatch repair protein MutS, type 2 0.74 0.31 -0.31
43 AT2G01320 ABC-2 type transporter family protein ATP-binding cassette G7 0.74 0.34 -0.32
44 AT1G35340 ATP-dependent protease La (LON) domain protein 0.74 0.31 -0.3
45 AT1G62250 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 15 growth stages; Has
30 Blast hits to 30 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.74 0.3 -0.32
46 AT1G76110 HMG (high mobility group) box protein with ARID/BRIGHT
DNA-binding domain		 0.74 0.32 -0.32
47 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family
protein		 0.74 0.34 -0.3
48 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.74 0.34 -0.32
49 AT2G22650 FAD-dependent oxidoreductase family protein 0.74 0.31 -0.31
50 AT3G51950 Zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 0.74 0.3 -0.31
51 AT3G02830 zinc finger protein 1 zinc finger protein 1 0.74 0.32 -0.32
52 AT2G43610 Chitinase family protein -0.74 0.33 -0.31
53 AT1G72030 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.74 0.32 -0.3
54 AT3G57470 Insulinase (Peptidase family M16) family protein 0.73 0.3 -0.32
55 AT5G06300 Putative lysine decarboxylase family protein LONELY GUY 7 -0.73 0.32 -0.3
56 AT3G01140 myb domain protein 106 myb domain protein 106, myb domain
protein 106, NOECK		 0.73 0.33 -0.32
57 AT3G56830 Protein of unknown function (DUF565) 0.73 0.31 -0.32
58 AT1G50840 polymerase gamma 2 polymerase gamma 2, polymerase I A 0.73 0.34 -0.3
59 AT1G29280 WRKY DNA-binding protein 65 WRKY DNA-BINDING PROTEIN 65, WRKY
DNA-binding protein 65		 -0.73 0.32 -0.32
60 AT2G24280 alpha/beta-Hydrolases superfamily protein 0.73 0.31 -0.3
61 AT5G04440 Protein of unknown function (DUF1997) 0.73 0.33 -0.33
62 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 0.73 0.31 -0.31
63 AT4G34480 O-Glycosyl hydrolases family 17 protein 0.72 0.32 -0.34
64 AT3G26085 CAAX amino terminal protease family protein 0.72 0.3 -0.31
65 AT3G53570 FUS3-complementing gene 1 FUS3-complementing gene 1, AME2,
FUS3-complementing gene 1		 0.72 0.31 -0.29
66 AT1G49390 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.31 -0.32
67 AT5G02860 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.3 -0.29
68 AT4G39820 Tetratricopeptide repeat (TPR)-like superfamily protein -0.72 0.31 -0.32
69 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 0.72 0.29 -0.3
70 AT5G60760 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.71 0.33 -0.33
71 AT1G76730 NagB/RpiA/CoA transferase-like superfamily protein 0.71 0.33 -0.31
72 AT1G29700 Metallo-hydrolase/oxidoreductase superfamily protein 0.71 0.31 -0.31
73 AT3G15400 anther 20 anther 20 0.71 0.3 -0.31
74 AT1G25290 RHOMBOID-like protein 10 RHOMBOID-like protein 10,
RHOMBOID-like protein 10		 0.71 0.31 -0.3
75 AT1G05670 Pentatricopeptide repeat (PPR-like) superfamily protein 0.71 0.3 -0.32
76 AT3G01210 RNA-binding (RRM/RBD/RNP motifs) family protein 0.71 0.32 -0.33
77 AT5G20220 zinc knuckle (CCHC-type) family protein 0.71 0.34 -0.32
78 AT2G29300 NAD(P)-binding Rossmann-fold superfamily protein 0.71 0.33 -0.33
79 AT1G49180 protein kinase family protein 0.71 0.31 -0.33
80 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.71 0.33 -0.29
81 AT3G19900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae -
0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).		 0.71 0.31 -0.32
82 AT5G61830 NAD(P)-binding Rossmann-fold superfamily protein 0.71 0.31 -0.31
83 AT5G66550 Maf-like protein 0.71 0.3 -0.31
84 AT2G47460 myb domain protein 12 MYB DOMAIN PROTEIN 12, myb domain
protein 12, PRODUCTION OF FLAVONOL
GLYCOSIDES 1		 -0.7 0.33 -0.31
85 AT2G45400 NAD(P)-binding Rossmann-fold superfamily protein BEN1 -0.7 0.33 -0.32
86 AT4G33070 Thiamine pyrophosphate dependent pyruvate decarboxylase
family protein		 -0.69 0.31 -0.3
87 AT2G47550 Plant invertase/pectin methylesterase inhibitor superfamily -0.68 0.32 -0.31
88 AT1G77120 alcohol dehydrogenase 1 ALCOHOL DEHYDROGENASE, alcohol
dehydrogenase 1, ARABIDOPSIS
THALIANA ALCOHOL DEHYDROGENASE,
ATADH1		 -0.67 0.33 -0.32
89 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 -0.66 0.34 -0.32
90 AT5G40510 Sucrase/ferredoxin-like family protein -0.66 0.35 -0.29
91 AT5G60960 Pentatricopeptide repeat (PPR) superfamily protein PPR protein localized to the
nucleus and mitochondria 1		 -0.66 0.33 -0.31
92 AT4G31340 myosin heavy chain-related -0.65 0.32 -0.32
93 AT1G68200 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.65 0.32 -0.31
94 AT4G20210 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.65 0.33 -0.3
95 AT5G59560 sensitivity to red light reduced protein (SRR1) SENSITIVITY TO RED LIGHT REDUCED 1 -0.65 0.31 -0.29
96 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 -0.64 0.31 -0.32
97 AT4G27000 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45C -0.64 0.32 -0.32
98 AT1G52950 Nucleic acid-binding, OB-fold-like protein -0.64 0.33 -0.34
99 AT4G32220 transposable element gene -0.64 0.32 -0.31
100 AT1G18690 Galactosyl transferase GMA12/MNN10 family protein -0.64 0.32 -0.32
101 AT3G01130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.31 -0.32
102 AT2G16060 hemoglobin 1 hemoglobin 1, ARATH GLB1, ATGLB1,
CLASS I HEMOGLOBIN, hemoglobin 1,
NSHB1		 -0.63 0.32 -0.32
103 AT2G03220 fucosyltransferase 1 ARABIDOPSIS THALIANA
FUCOSYLTRANSFERASE 1, ARABIDOPSIS
THALIANA FUCOSYLTRANSFERASE 1,
fucosyltransferase 1, MURUS 2		 -0.63 0.31 -0.32
104 AT3G15950 DNA topoisomerase-related NAI2 -0.63 0.32 -0.33
105 AT2G35270 Predicted AT-hook DNA-binding family protein GIANT KILLER -0.63 0.32 -0.34
106 AT1G20900 Predicted AT-hook DNA-binding family protein AT-hook motif nuclear-localized
protein 27, ESCAROLA, ORESARA 7		 -0.62 0.31 -0.32
107 AT4G01850 S-adenosylmethionine synthetase 2 AtSAM2, MAT2, S-adenosylmethionine
synthetase 2, S-ADENOSYLMETHIONINE
SYNTHETASE 2		 -0.62 0.32 -0.32
108 AT4G37400 cytochrome P450, family 81, subfamily F, polypeptide 3 cytochrome P450, family 81,
subfamily F, polypeptide 3		 -0.62 0.31 -0.32
109 AT3G16690 Nodulin MtN3 family protein AtSWEET16, SWEET16 -0.62 0.32 -0.3
110 AT1G64930 cytochrome P450, family 87, subfamily A, polypeptide 7 cytochrome P450, family 87,
subfamily A, polypeptide 7		 -0.62 0.29 -0.32
111 AT1G76090 sterol methyltransferase 3 sterol methyltransferase 3 -0.62 0.32 -0.31
112 AT4G39550 Galactose oxidase/kelch repeat superfamily protein -0.61 0.31 -0.31
113 AT1G80910 Protein of unknown function (DUF1712) -0.61 0.34 -0.32
114 AT4G12650 Endomembrane protein 70 protein family -0.61 0.31 -0.31
115 AT2G17850 Rhodanese/Cell cycle control phosphatase superfamily
protein		 -0.61 0.31 -0.3
116 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 -0.61 0.31 -0.3
117 AT5G14150 Protein of unknown function, DUF642 -0.61 0.33 -0.3
118 AT1G50580 UDP-Glycosyltransferase superfamily protein -0.61 0.29 -0.32
119 AT5G44460 calmodulin like 43 calmodulin like 43 -0.61 0.31 -0.33
120 AT4G11610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.6 0.3 -0.34
121 AT4G39720 VQ motif-containing protein -0.6 0.3 -0.32
122 AT3G25970 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.31 -0.32
123 AT5G01610 Protein of unknown function, DUF538 -0.6 0.31 -0.3
124 AT2G35030 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.29 -0.3
125 AT2G17330 putative obtusifoliol 14-alpha demethylase. Expressed
pseudogene.		 CYTOCHROME P450 51A1, CYTOCHROME
P450 51G2		 -0.6 0.32 -0.31
126 AT4G14980 Cysteine/Histidine-rich C1 domain family protein -0.6 0.3 -0.3
127 AT1G77130 plant glycogenin-like starch initiation protein 2 glucuronic acid substitution of
xylan 3, plant glycogenin-like
starch initiation protein 2		 -0.6 0.31 -0.3
128 AT3G01720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in
23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 316; Viruses - 0; Other Eukaryotes - 58
(source: NCBI BLink).		 -0.6 0.34 -0.33
129 AT5G05920 deoxyhypusine synthase deoxyhypusine synthase, embryo sac
development arrest 22		 -0.6 0.31 -0.31
130 AT3G21720 isocitrate lyase isocitrate lyase -0.6 0.29 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
131 C0178 MST_2446.7 - - - 0.74 0.43 -0.46