AT3G48110 : EDD
Query Information
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AGICode AT3G48110
Description glycine-tRNA ligases
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 1 0.29 -0.33
2 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.93 0.31 -0.31
3 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.92 0.32 -0.31
4 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.92 0.32 -0.33
5 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.91 0.32 -0.3
6 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.91 0.3 -0.33
7 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.9 0.3 -0.32
8 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.9 0.3 -0.33
9 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.9 0.32 -0.32
10 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.3 -0.32
11 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138		 0.89 0.29 -0.3
12 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.89 0.31 -0.3
13 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.88 0.33 -0.31
14 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.88 0.32 -0.32
15 AT3G12080 GTP-binding family protein embryo defective 2738 0.88 0.34 -0.31
16 AT3G25660 Amidase family protein 0.88 0.34 -0.33
17 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.31 -0.3
18 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.88 0.3 -0.29
19 AT1G29070 Ribosomal protein L34 0.88 0.33 -0.31
20 AT3G51870 Mitochondrial substrate carrier family protein 0.87 0.33 -0.29
21 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.87 0.32 -0.32
22 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.87 0.33 -0.31
23 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.87 0.32 -0.33
24 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.87 0.31 -0.32
25 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.87 0.31 -0.33
26 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.87 0.31 -0.31
27 AT5G16715 ATP binding;valine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 embryo defective 2247 0.87 0.31 -0.29
28 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.87 0.32 -0.31
29 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.86 0.3 -0.31
30 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.86 0.3 -0.33
31 AT3G60750 Transketolase 0.86 0.33 -0.32
32 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.86 0.31 -0.32
33 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.86 0.3 -0.3
34 AT3G21300 RNA methyltransferase family protein 0.86 0.3 -0.29
35 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12		 0.86 0.33 -0.29
36 AT2G14880 SWIB/MDM2 domain superfamily protein 0.86 0.33 -0.29
37 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 0.86 0.32 -0.31
38 AT1G50450 Saccharopine dehydrogenase 0.86 0.34 -0.32
39 AT5G08650 Small GTP-binding protein 0.86 0.29 -0.35
40 AT3G48500 Nucleic acid-binding, OB-fold-like protein PIGMENT DEFECTIVE 312, PLASTID
TRANSCRIPTIONALLY ACTIVE 10		 0.86 0.3 -0.3
41 AT4G19710 aspartate kinase-homoserine dehydrogenase ii ASPARTATE KINASE-HOMOSERINE
DEHYDROGENASE, aspartate
kinase-homoserine dehydrogenase ii		 0.86 0.32 -0.32
42 AT2G48120 pale cress protein (PAC) PALE CRESS 0.86 0.31 -0.32
43 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.85 0.31 -0.3
44 AT3G02450 cell division protein ftsH, putative 0.85 0.32 -0.32
45 AT2G04270 RNAse E/G-like RNAse E/G-like 0.85 0.33 -0.31
46 AT1G80030 Molecular chaperone Hsp40/DnaJ family protein 0.85 0.31 -0.33
47 AT2G47220 DOMAIN OF UNKNOWN FUNCTION 724 5 DOMAIN OF UNKNOWN FUNCTION 724 5,
DOMAIN OF UNKNOWN FUNCTION 724 5		 0.85 0.3 -0.33
48 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.85 0.32 -0.32
49 AT4G04890 protodermal factor 2 protodermal factor 2 0.84 0.31 -0.3
50 AT3G10160 DHFS-FPGS homolog C A. THALIANA DHFS-FPGS HOMOLOG C,
DHFS-FPGS homolog C,
folylpolyglutamate synthetase 2		 0.84 0.32 -0.33
51 AT2G41720 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2654 0.84 0.32 -0.31
52 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.84 0.29 -0.31
53 AT4G04350 tRNA synthetase class I (I, L, M and V) family protein EMBRYO DEFECTIVE 2369 0.84 0.32 -0.3
54 AT1G10910 Pentatricopeptide repeat (PPR) superfamily protein EMBRYO DEFECTIVE 3103 0.84 0.31 -0.33
55 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.84 0.32 -0.31
56 AT2G47590 photolyase/blue-light receptor 2 photolyase/blue-light receptor 2 0.84 0.33 -0.31
57 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.83 0.3 -0.28
58 AT2G31530 SecY protein transport family protein EMBRYO DEFECTIVE 2289, SECY
HOMOLOG 2		 0.83 0.31 -0.3
59 AT1G30610 pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2279, EMBRYO
DEFECTIVE 88		 0.83 0.31 -0.31
60 AT4G36390 Methylthiotransferase 0.82 0.33 -0.29
61 AT1G73090 unknown protein; Has 28 Blast hits to 28 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.82 0.3 -0.33
62 AT1G20870 HSP20-like chaperones superfamily protein 0.82 0.33 -0.32
63 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.82 0.3 -0.32
64 AT3G49650 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.82 0.32 -0.31
65 AT1G50000 methyltransferases 0.82 0.31 -0.32
66 AT1G05385 photosystem II 11 kDa protein-related LOW PSII ACCUMULATION 19, Psb27-H1 0.82 0.33 -0.31
67 AT1G42550 plastid movement impaired1 PLASTID MOVEMENT IMPAIRED1 0.82 0.29 -0.32
68 AT4G00370 Major facilitator superfamily protein ANTR2, anion transporter 2 0.82 0.31 -0.3
69 AT4G34020 Class I glutamine amidotransferase-like superfamily protein DJ-1 homolog C, DJ-1 homolog C 0.82 0.31 -0.3
70 AT2G37450 nodulin MtN21 /EamA-like transporter family protein 0.82 0.34 -0.31
71 AT1G63680 acid-amino acid ligases;ligases;ATP binding;ATP
binding;ligases		 ALBINO OR PALE-GREEN 13, ATMURE,
MURE, PIGMENT DEFECTIVE EMBRYO 316		 0.82 0.31 -0.32
72 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.81 0.34 -0.33
73 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.8 0.32 -0.3
74 AT3G17820 glutamine synthetase 1.3 ARABIDOPSIS THALIANA GLUTAMINE
SYNTHASE CLONE KB6, glutamine
synthetase 1.3, GLUTAMINE
SYNTHETASE 1;3		 -0.8 0.31 -0.32
75 AT1G72680 cinnamyl-alcohol dehydrogenase CINNAMYL ALCOHOL DEHYDROGENASE 1,
cinnamyl-alcohol dehydrogenase		 -0.79 0.32 -0.33
76 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.79 0.3 -0.33
77 AT2G43060 ILI1 binding bHLH 1 ILI1 binding bHLH 1 -0.77 0.33 -0.33
78 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.77 0.33 -0.32
79 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.77 0.31 -0.34
80 AT2G47520 Integrase-type DNA-binding superfamily protein Arabidopsis thaliana ethylene
response factor 71, ethylene
response factor 71, HYPOXIA
RESPONSIVE ERF (ETHYLENE RESPONSE
FACTOR) 2		 -0.76 0.3 -0.32
81 AT5G65020 annexin 2 annexin 2 -0.75 0.32 -0.33
82 AT3G19910 RING/U-box superfamily protein -0.74 0.32 -0.31
83 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.74 0.27 -0.32
84 AT1G13280 allene oxide cyclase 4 allene oxide cyclase 4 -0.74 0.32 -0.31
85 AT4G39955 alpha/beta-Hydrolases superfamily protein -0.74 0.32 -0.31
86 AT5G17650 glycine/proline-rich protein -0.74 0.3 -0.32
87 AT4G01610 Cysteine proteinases superfamily protein -0.73 0.31 -0.32
88 AT3G62580 Late embryogenesis abundant protein (LEA) family protein -0.73 0.3 -0.33
89 AT5G04750 F1F0-ATPase inhibitor protein, putative -0.73 0.33 -0.3
90 AT2G22480 phosphofructokinase 5 phosphofructokinase 5 -0.73 0.33 -0.33
91 AT5G61640 peptidemethionine sulfoxide reductase 1 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE A1,
peptidemethionine sulfoxide
reductase 1		 -0.73 0.33 -0.31
92 AT2G24200 Cytosol aminopeptidase family protein -0.73 0.3 -0.31
93 AT3G23600 alpha/beta-Hydrolases superfamily protein -0.72 0.31 -0.31
94 AT1G52140 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits
to 114 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.31 -0.31
95 AT5G07220 BCL-2-associated athanogene 3 BCL-2-associated athanogene 3,
BCL-2-associated athanogene 3		 -0.72 0.31 -0.31
96 AT2G27450 nitrilase-like protein 1 ATNLP1, CPA, nitrilase-like
protein 1		 -0.72 0.31 -0.31
97 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.72 0.32 -0.31
98 AT2G04400 Aldolase-type TIM barrel family protein -0.72 0.33 -0.33
99 AT4G35110 Arabidopsis phospholipase-like protein (PEARLI 4) family -0.72 0.31 -0.3
100 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.71 0.33 -0.3
101 AT1G69410 eukaryotic elongation factor 5A-3 EUKARYOTIC ELONGATION FACTOR 5A-3,
eukaryotic elongation factor 5A-3		 -0.71 0.34 -0.31
102 AT2G30130 Lateral organ boundaries (LOB) domain family protein ASL5, LBD12, PEACOCK 1 -0.71 0.33 -0.3
103 AT3G59760 O-acetylserine (thiol) lyase isoform C ARABIDOPSIS THALIANA
CYSTEINSYNTHASE-C, O-acetylserine
(thiol) lyase isoform C		 -0.71 0.31 -0.33
104 AT3G11100 sequence-specific DNA binding transcription factors -0.71 0.32 -0.32
105 AT4G37870 phosphoenolpyruvate carboxykinase 1 phosphoenolpyruvate carboxykinase
1, PHOSPHOENOLPYRUVATE
CARBOXYKINASE		 -0.71 0.3 -0.31
106 AT2G40800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits
to 43 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.71 0.3 -0.33
107 AT1G16670 Protein kinase superfamily protein -0.71 0.31 -0.32
108 AT4G32040 KNOTTED1-like homeobox gene 5 KNOTTED1-like homeobox gene 5 -0.71 0.34 -0.31
109 AT4G25900 Galactose mutarotase-like superfamily protein -0.7 0.31 -0.3
110 AT5G59140 BTB/POZ domain-containing protein -0.7 0.31 -0.3
111 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727		 -0.7 0.32 -0.32
112 AT5G67310 cytochrome P450, family 81, subfamily G, polypeptide 1 cytochrome P450, family 81,
subfamily G, polypeptide 1		 -0.7 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
113 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.95 0.47 -0.43 C0133