AT4G38020 : -
Query Information
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AGICode AT4G38020
Description tRNA/rRNA methyltransferase (SpoU) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G38020 tRNA/rRNA methyltransferase (SpoU) family protein 1 0.3 -0.34
2 AT1G05260 Peroxidase superfamily protein RARE COLD INDUCIBLE GENE 3, RCI3A -0.76 0.33 -0.32
3 AT2G28670 Disease resistance-responsive (dirigent-like protein)
family protein		 ENHANCED SUBERIN 1 -0.76 0.32 -0.3
4 AT1G15210 pleiotropic drug resistance 7 ATP-binding cassette G35,
PLEIOTROPIC DRUG RESISTANCE 7,
pleiotropic drug resistance 7		 -0.75 0.31 -0.3
5 AT2G18980 Peroxidase superfamily protein -0.74 0.32 -0.3
6 AT1G18880 Major facilitator superfamily protein nitrate transporter 1.9 -0.73 0.32 -0.34
7 AT5G41960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.72 0.31 -0.31
8 AT2G36100 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 1		 -0.72 0.33 -0.29
9 AT3G45960 expansin-like A3 expansin-like A3, ATEXPL3, ATHEXP
BETA 2.3, expansin-like A3, EXPL3		 -0.72 0.31 -0.34
10 AT5G18100 copper/zinc superoxide dismutase 3 copper/zinc superoxide dismutase 3 0.71 0.32 -0.33
11 AT2G15290 translocon at inner membrane of chloroplasts 21 TRANSLOCON AT INNER MEMBRANE OF
CHLOROPLASTS 21, CHLOROPLAST
IMPORT APPARATUS 5, PERMEASE IN
CHLOROPLASTS 1, translocon at
inner membrane of chloroplasts 21		 0.71 0.32 -0.33
12 AT5G18760 RING/U-box superfamily protein 0.71 0.32 -0.32
13 AT4G36810 geranylgeranyl pyrophosphate synthase 1 geranylgeranyl pyrophosphate
synthase 1		 0.7 0.3 -0.32
14 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 -0.7 0.31 -0.32
15 AT4G02670 indeterminate(ID)-domain 12 indeterminate(ID)-domain 12,
indeterminate(ID)-domain 12		 0.7 0.31 -0.31
16 AT4G13200 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast,
plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 97 Blast hits to 97 proteins
in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2;
Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink).		 0.7 0.31 -0.31
17 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B 0.69 0.31 -0.32
18 AT1G71870 MATE efflux family protein -0.69 0.3 -0.32
19 AT2G35380 Peroxidase superfamily protein -0.69 0.32 -0.32
20 AT3G14450 CTC-interacting domain 9 CTC-interacting domain 9 0.69 0.31 -0.31
21 AT1G30750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: hypocotyl, root, pollen
tube; Has 1177 Blast hits to 607 proteins in 189 species:
Archae - 0; Bacteria - 312; Metazoa - 195; Fungi - 185;
Plants - 27; Viruses - 16; Other Eukaryotes - 442 (source:
NCBI BLink).		 -0.69 0.32 -0.32
22 AT4G16490 ARM repeat superfamily protein 0.69 0.32 -0.33
23 AT1G73160 UDP-Glycosyltransferase superfamily protein -0.68 0.32 -0.33
24 AT3G52340 sucrose-6F-phosphate phosphohydrolase 2 SUCROSE-PHOSPHATASE 2,
sucrose-6F-phosphate
phosphohydrolase 2		 0.68 0.31 -0.3
25 AT2G01220 Nucleotidylyl transferase superfamily protein 0.68 0.3 -0.34
26 AT5G39790 5'-AMP-activated protein kinase-related 0.68 0.32 -0.3
27 AT4G21860 methionine sulfoxide reductase B 2 methionine sulfoxide reductase B 2 0.68 0.34 -0.35
28 AT5G66390 Peroxidase superfamily protein -0.68 0.34 -0.32
29 AT5G16810 Protein kinase superfamily protein 0.68 0.31 -0.3
30 AT1G44970 Peroxidase superfamily protein -0.67 0.32 -0.31
31 AT4G19030 NOD26-like major intrinsic protein 1 AT-NLM1, NOD26-LIKE MAJOR
INTRINSIC PROTEIN 1, NOD26-LIKE
INTRINSIC PROTEIN 1;1, NOD26-like
major intrinsic protein 1		 -0.67 0.32 -0.3
32 AT1G77690 like AUX1 3 like AUX1 3 -0.67 0.29 -0.32
33 AT2G19310 HSP20-like chaperones superfamily protein 0.67 0.3 -0.33
34 AT3G22620 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.67 0.3 -0.32
35 AT4G20390 Uncharacterised protein family (UPF0497) -0.67 0.33 -0.3
36 AT1G65480 PEBP (phosphatidylethanolamine-binding protein) family
protein		 FLOWERING LOCUS T -0.67 0.3 -0.33
37 AT1G65070 DNA mismatch repair protein MutS, type 2 0.67 0.32 -0.32
38 AT5G66690 UDP-Glycosyltransferase superfamily protein UGT72E2 -0.67 0.32 -0.31
39 AT1G28130 Auxin-responsive GH3 family protein GH3.17 -0.67 0.31 -0.32
40 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family
protein		 0.67 0.32 -0.31
41 AT1G68850 Peroxidase superfamily protein -0.67 0.31 -0.33
42 AT5G59610 Chaperone DnaJ-domain superfamily protein 0.67 0.33 -0.32
43 AT3G24240 Leucine-rich repeat receptor-like protein kinase family
protein		 -0.66 0.3 -0.3
44 AT1G74460 GDSL-like Lipase/Acylhydrolase superfamily protein -0.66 0.33 -0.31
45 AT2G43390 unknown protein; Has 7 Blast hits to 7 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.66 0.31 -0.3
46 AT2G41660 Protein of unknown function, DUF617 mizu-kussei 1 -0.66 0.32 -0.32
47 AT3G28920 homeobox protein 34 homeobox protein 34, homeobox
protein 34, ZINC FINGER
HOMEODOMAIN 9		 0.66 0.32 -0.32
48 AT5G58860 cytochrome P450, family 86, subfamily A, polypeptide 1 CYP86, cytochrome P450, family 86,
subfamily A, polypeptide 1		 -0.66 0.31 -0.31
49 AT1G64590 NAD(P)-binding Rossmann-fold superfamily protein -0.66 0.3 -0.3
50 AT2G32300 uclacyanin 1 uclacyanin 1 -0.66 0.3 -0.31
51 AT4G02090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root; Has 132
Blast hits to 132 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.32 -0.3
52 AT3G11550 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 2		 -0.66 0.31 -0.3
53 AT2G39430 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.66 0.31 -0.3
54 AT4G18975 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.31 -0.31
55 AT3G54770 RNA-binding (RRM/RBD/RNP motifs) family protein -0.65 0.31 -0.31
56 AT1G65410 non-intrinsic ABC protein 11 ATP-binding cassette I13,
non-intrinsic ABC protein 11,
non-intrinsic ABC protein 11,
TRIGALACTOSYLDIACYLGLYCEROL 3		 0.65 0.33 -0.3
57 AT3G49845 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 WINDHOSE 3 -0.65 0.31 -0.31
58 AT2G43480 Peroxidase superfamily protein -0.65 0.3 -0.32
59 AT3G24070 Zinc knuckle (CCHC-type) family protein 0.65 0.3 -0.32
60 AT4G37400 cytochrome P450, family 81, subfamily F, polypeptide 3 cytochrome P450, family 81,
subfamily F, polypeptide 3		 -0.65 0.32 -0.31
61 AT4G29270 HAD superfamily, subfamily IIIB acid phosphatase -0.65 0.31 -0.31
62 AT5G27670 histone H2A 7 histone H2A 7 0.65 0.31 -0.31
63 AT3G59850 Pectin lyase-like superfamily protein -0.65 0.29 -0.31
64 AT5G04260 WCRKC thioredoxin 2 WCRKC thioredoxin 2 0.65 0.31 -0.32
65 AT4G36910 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 1,
CYSTATHIONE [BETA]-SYNTHASE
DOMAIN-CONTAINING PROTEIN 2, LOSS
OF THE TIMING OF ET AND JA
BIOSYNTHESIS 2		 0.65 0.32 -0.33
66 AT5G28300 Duplicated homeodomain-like superfamily protein 0.65 0.31 -0.35
67 AT5G09480 hydroxyproline-rich glycoprotein family protein -0.65 0.33 -0.33
68 AT5G63860 Regulator of chromosome condensation (RCC1) family protein UVB-RESISTANCE 8 0.65 0.32 -0.33
69 AT5G57980 RNA polymerase II fifth largest subunit, C RNA polymerase II fifth largest
subunit, C		 -0.65 0.29 -0.32
70 AT2G33735 Chaperone DnaJ-domain superfamily protein 0.65 0.32 -0.27
71 AT5G14020 Endosomal targeting BRO1-like domain-containing protein -0.65 0.29 -0.31
72 AT3G04310 unknown protein; Has 44 Blast hits to 44 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.33 -0.31
73 AT1G28150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 96 Blast hits to 96 proteins
in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0;
Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.64 0.31 -0.31
74 AT2G48130 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.64 0.32 -0.32
75 AT2G23540 GDSL-like Lipase/Acylhydrolase superfamily protein -0.64 0.31 -0.32
76 AT3G53510 ABC-2 type transporter family protein ATP-binding cassette G20 -0.64 0.31 -0.33
77 AT1G03840 C2H2 and C2HC zinc fingers superfamily protein Magpie -0.64 0.32 -0.34
78 AT1G79160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits
to 102 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.3 -0.31
79 AT2G46090 Diacylglycerol kinase family protein 0.64 0.33 -0.32
80 AT3G16440 myrosinase-binding protein-like protein-300B myrosinase-binding protein-like
protein-300B, maternal effect
embryo arrest 36,
myrosinase-binding protein-like
protein-300B		 -0.64 0.34 -0.32
81 AT2G04480 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits
to 38 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.32 -0.32
82 AT3G29190 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.64 0.31 -0.28
83 AT5G56540 arabinogalactan protein 14 arabinogalactan protein 14,
ATAGP14		 -0.64 0.32 -0.31
84 AT2G25980 Mannose-binding lectin superfamily protein -0.64 0.31 -0.29
85 AT1G31950 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.64 0.34 -0.29
86 AT5G42180 Peroxidase superfamily protein peroxidase 64 -0.64 0.31 -0.31
87 AT3G03980 NAD(P)-binding Rossmann-fold superfamily protein 0.63 0.3 -0.31
88 AT4G17215 Pollen Ole e 1 allergen and extensin family protein -0.63 0.31 -0.33
89 AT1G33265 Transmembrane proteins 14C 0.63 0.3 -0.32
90 AT2G30210 laccase 3 laccase 3 -0.63 0.31 -0.33
91 AT5G62340 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.63 0.3 -0.33
92 AT4G36610 alpha/beta-Hydrolases superfamily protein -0.63 0.31 -0.33
93 AT4G30170 Peroxidase family protein -0.63 0.32 -0.33
94 AT1G56320 BEST Arabidopsis thaliana protein match is: Glycine-rich
protein family (TAIR:AT5G49350.2); Has 60 Blast hits to 60
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.31 -0.31
95 AT1G27700 Syntaxin/t-SNARE family protein 0.63 0.31 -0.31
96 AT1G30080 Glycosyl hydrolase superfamily protein -0.63 0.31 -0.32
97 AT5G57090 Auxin efflux carrier family protein AGRAVITROPIC ROOT, AGRAVITROPIC
ROOT 1, ARABIDOPSIS THALIANA
PIN-FORMED 2, ETHYLENE INSENSITIVE
ROOT 1, MM31, PIN-FORMED 2, WAVY
ROOTS 6		 -0.63 0.31 -0.33
98 AT4G18510 CLAVATA3/ESR-related 2 CLAVATA3/ESR-related 2 -0.62 0.33 -0.33
99 AT2G43670 Carbohydrate-binding X8 domain superfamily protein -0.62 0.3 -0.32
100 AT2G42570 TRICHOME BIREFRINGENCE-LIKE 39 TRICHOME BIREFRINGENCE-LIKE 39 -0.62 0.29 -0.35
101 AT4G00080 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 unfertilized embryo sac 11 -0.62 0.3 -0.31
102 AT3G22600 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.32 -0.34
103 AT4G34680 GATA transcription factor 3 GATA transcription factor 3 0.62 0.32 -0.34
104 AT3G06460 GNS1/SUR4 membrane protein family -0.62 0.32 -0.32
105 AT4G38080 hydroxyproline-rich glycoprotein family protein -0.62 0.32 -0.31
106 AT3G14940 phosphoenolpyruvate carboxylase 3 phosphoenolpyruvate carboxylase 3,
phosphoenolpyruvate carboxylase 3		 -0.62 0.31 -0.34
107 AT2G20515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71
proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.62 0.3 -0.35
108 AT2G27370 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 3		 -0.62 0.31 -0.33
109 AT3G09310 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast
hits to 5781 proteins in 1903 species: Archae - 0; Bacteria
- 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3;
Other Eukaryotes - 1778 (source: NCBI BLink).		 0.62 0.3 -0.31
110 AT2G16570 GLN phosphoribosyl pyrophosphate amidotransferase 1 GLN phosphoribosyl pyrophosphate
amidotransferase 1, ATASE, GLN
phosphoribosyl pyrophosphate
amidotransferase 1		 -0.62 0.31 -0.32
111 AT3G20840 Integrase-type DNA-binding superfamily protein PLETHORA 1 -0.62 0.32 -0.32
112 AT1G53830 pectin methylesterase 2 pectin methylesterase 2, pectin
methylesterase 2		 -0.61 0.31 -0.34
113 AT5G04970 Plant invertase/pectin methylesterase inhibitor superfamily -0.61 0.31 -0.3
114 AT3G05890 Low temperature and salt responsive protein family RARE-COLD-INDUCIBLE 2B -0.61 0.34 -0.31
115 AT3G15240 Serine/threonine-protein kinase WNK (With No
Lysine)-related		 -0.61 0.31 -0.32
116 AT5G36140 cytochrome P450, family 716, subfamily A, polypeptide 2 cytochrome P450, family 716,
subfamily A, polypeptide 2		 -0.61 0.32 -0.31
117 AT3G28970 Domain of unknown function (DUF298) antiauxin-resistant 3 0.61 0.31 -0.31
118 AT1G70170 matrix metalloproteinase matrix metalloproteinase -0.61 0.33 -0.33
119 AT4G30760 Putative endonuclease or glycosyl hydrolase 0.61 0.33 -0.33
120 AT4G26320 arabinogalactan protein 13 arabinogalactan protein 13 -0.61 0.33 -0.29
121 AT1G74500 activation-tagged BRI1(brassinosteroid-insensitive
1)-suppressor 1		 activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, TARGET OF
MONOPTEROS 7		 -0.61 0.32 -0.32
122 AT5G09520 hydroxyproline-rich glycoprotein family protein Pro-Glu-Leu|Ile|Val-Pro-Lys 2 -0.6 0.31 -0.32
123 AT1G14960 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.6 0.3 -0.33
124 AT5G37690 SGNH hydrolase-type esterase superfamily protein -0.6 0.32 -0.29
125 AT3G48410 alpha/beta-Hydrolases superfamily protein -0.6 0.29 -0.3
126 AT5G12420 O-acyltransferase (WSD1-like) family protein -0.6 0.31 -0.3
127 AT2G48140 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 embryo sac development arrest 4 -0.6 0.33 -0.32
128 AT1G33340 ENTH/ANTH/VHS superfamily protein -0.6 0.31 -0.31
129 AT3G19390 Granulin repeat cysteine protease family protein -0.6 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
130 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.88 0.5 -0.43 C0133
131 C0071 Cyanidin 3-O-[2''-O-(6'''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-(6''''-O-malonyl) glucoside - - - 0.86 0.49 -0.45
132 C0182 MST_2996.4 - - - 0.84 0.45 -0.46
133 C0070 Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl)xylosyl) 6''-O-(p-O-coumaroyl) glucoside] 5-O-[6''''-O-(malonyl) glucoside] - - - 0.83 0.49 -0.42
134 C0129 Kaempferol-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Kaempferol-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - kaempferol glucoside biosynthesis (Arabidopsis) 0.82 0.44 -0.45
135 C0072 Cyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-glucoside - - - 0.79 0.45 -0.44
136 C0227 Ribose D-Ribose D-Ribose ribose degradation,
guanosine nucleotides degradation I,
pyrimidine salvage pathway,
pyridine nucleotide cycling (plants),
adenine and adenosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage II,
cis-zeatin biosynthesis,
adenosine nucleotides degradation I,
pyrimidine ribonucleosides degradation II 		-0.72 0.45 -0.48 C0227
137 C0158 MST_1480.5 - - - 0.68 0.42 -0.44
138 C0081 Digalactosyldiacylglycerol-36:2 - Digalactosyldiacylglycerol-36:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.63 0.48 -0.49 C0081
139 C0008 γ-Aminobutyric acid - 4-Aminobutyrate glutamate degradation IV,
4-aminobutyrate degradation IV,
putrescine degradation IV 		-0.6 0.31 -0.34 C0008