AT4G28660 : photosystem II reaction center PSB28 protein
Query Information
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AGICode AT4G28660
Description photosystem II reaction center PSB28 protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 1 0.31 -0.33
2 AT2G23670 homolog of Synechocystis YCF37 homolog of Synechocystis YCF37 0.93 0.32 -0.3
3 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.92 0.32 -0.31
4 AT1G06190 Rho termination factor 0.91 0.31 -0.31
5 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.91 0.31 -0.34
6 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.91 0.33 -0.31
7 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.91 0.32 -0.3
8 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.91 0.32 -0.34
9 AT5G08050 Protein of unknown function (DUF1118) 0.91 0.3 -0.32
10 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.91 0.29 -0.31
11 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.9 0.3 -0.29
12 AT3G15850 fatty acid desaturase 5 ADS3, fatty acid desaturase 5,
FATTY ACID DESATURASE B, JB67		 0.9 0.31 -0.32
13 AT4G25050 acyl carrier protein 4 acyl carrier protein 4 0.9 0.3 -0.33
14 AT3G49470 nascent polypeptide-associated complex subunit alpha-like
protein 2		 nascent polypeptide-associated
complex subunit alpha-like protein
2		 0.9 0.31 -0.3
15 AT3G58610 ketol-acid reductoisomerase 0.9 0.3 -0.29
16 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.9 0.29 -0.3
17 AT5G41050 Pollen Ole e 1 allergen and extensin family protein 0.9 0.33 -0.3
18 AT1G80770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 pigment defective 318 0.9 0.31 -0.31
19 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.9 0.31 -0.32
20 AT1G32470 Single hybrid motif superfamily protein 0.9 0.32 -0.32
21 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.9 0.32 -0.35
22 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.9 0.31 -0.32
23 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein 0.9 0.31 -0.29
24 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.9 0.32 -0.3
25 AT1G56050 GTP-binding protein-related 0.89 0.31 -0.32
26 AT1G73110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.89 0.31 -0.31
27 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.89 0.29 -0.32
28 AT3G12930 Lojap-related protein 0.89 0.33 -0.33
29 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.89 0.32 -0.32
30 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.89 0.32 -0.3
31 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.89 0.31 -0.3
32 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.3 -0.31
33 AT3G13740 Ribonuclease III family protein 0.89 0.34 -0.3
34 AT2G26580 plant-specific transcription factor YABBY family protein YABBY5 0.88 0.33 -0.32
35 AT4G16980 arabinogalactan-protein family 0.88 0.29 -0.32
36 AT4G34730 ribosome-binding factor A family protein 0.88 0.3 -0.3
37 AT1G11430 plastid developmental protein DAG, putative 0.88 0.31 -0.29
38 AT1G16880 uridylyltransferase-related ACT domain repeats 11 0.88 0.33 -0.3
39 AT1G72610 germin-like protein 1 A. THALIANA GERMIN-LIKE PROTEIN 1,
germin-like protein 1, GERMIN-LIKE
PROTEIN 1		 0.88 0.3 -0.3
40 AT1G64770 NDH-dependent cyclic electron flow 1 NDH-dependent cyclic electron flow
1, NAD(P)H DEHYDROGENASE SUBUNIT
45, Photosynthetic NDH subcomplex
B 2		 0.88 0.32 -0.33
41 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.88 0.28 -0.31
42 AT5G48630 Cyclin family protein 0.88 0.3 -0.3
43 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.88 0.32 -0.31
44 AT4G15510 Photosystem II reaction center PsbP family protein 0.88 0.32 -0.3
45 AT5G47630 mitochondrial acyl carrier protein 3 mitochondrial acyl carrier protein
3		 0.88 0.32 -0.33
46 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.31 -0.32
47 AT3G51470 Protein phosphatase 2C family protein 0.88 0.3 -0.32
48 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.88 0.33 -0.32
49 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.87 0.32 -0.3
50 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.87 0.33 -0.3
51 AT1G10960 ferredoxin 1 ferredoxin 1, ferredoxin 1 0.87 0.31 -0.31
52 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.87 0.32 -0.32
53 AT4G38860 SAUR-like auxin-responsive protein family 0.87 0.33 -0.29
54 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.87 0.29 -0.32
55 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.87 0.31 -0.29
56 AT5G11160 adenine phosphoribosyltransferase 5 adenine phosphoribosyltransferase
5		 0.87 0.32 -0.3
57 AT2G39670 Radical SAM superfamily protein 0.87 0.32 -0.32
58 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 0.87 0.3 -0.33
59 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.86 0.33 -0.33
60 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.86 0.31 -0.3
61 AT3G10520 haemoglobin 2 haemoglobin 2, ARATH GLB2,
ARABIDOPSIS HEMOGLOBIN 2,
HEMOGLOBIN 2, haemoglobin 2,
NON-SYMBIOTIC HAEMOGLOBIN 2		 0.86 0.32 -0.31
62 AT5G48220 Aldolase-type TIM barrel family protein 0.86 0.33 -0.31
63 AT4G35450 ankyrin repeat-containing protein 2 AFT, ankyrin repeat-containing
protein 2, AKR2A		 0.86 0.31 -0.32
64 AT3G53430 Ribosomal protein L11 family protein 0.86 0.28 -0.33
65 AT1G24360 NAD(P)-binding Rossmann-fold superfamily protein 0.86 0.32 -0.32
66 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.86 0.32 -0.32
67 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.86 0.3 -0.35
68 AT1G04640 lipoyltransferase 2 lipoyltransferase 2 0.86 0.31 -0.32
69 AT2G02740 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 3, PLASTID
TRANSCRIPTIONALLY ACTIVE11, WHIRLY
3		 0.86 0.29 -0.3
70 AT1G60950 2Fe-2S ferredoxin-like superfamily protein FERREDOXIN 2, FED A 0.86 0.33 -0.32
71 AT2G26500 cytochrome b6f complex subunit (petM), putative 0.86 0.31 -0.31
72 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.3 -0.3
73 AT1G26570 UDP-glucose dehydrogenase 1 UDP-GLUCOSE DEHYDROGENASE 1,
UDP-glucose dehydrogenase 1		 0.86 0.32 -0.31
74 AT3G06680 Ribosomal L29e protein family 0.86 0.29 -0.31
75 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.86 0.32 -0.32
76 AT1G33810 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.86 0.32 -0.29
77 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.86 0.3 -0.31
78 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.86 0.32 -0.31
79 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.86 0.32 -0.34
80 AT1G52080 actin binding protein family AR791 -0.86 0.31 -0.32
81 AT4G39620 Tetratricopeptide repeat (TPR)-like superfamily protein A. THALIANA PENTATRICOPEPTIDE
REPEAT 5, EMBRYO DEFECTIVE 2453		 0.86 0.31 -0.32
82 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.86 0.32 -0.31
83 AT3G45050 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.86 0.31 -0.3
84 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.85 0.32 -0.31
85 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.82 0.29 -0.31
86 AT2G38800 Plant calmodulin-binding protein-related -0.82 0.29 -0.32
87 AT1G20490 AMP-dependent synthetase and ligase family protein -0.8 0.31 -0.3
88 AT5G02170 Transmembrane amino acid transporter family protein -0.8 0.33 -0.29
89 AT5G63970 Copine (Calcium-dependent phospholipid-binding protein)
family		 -0.8 0.33 -0.33
90 AT1G03080 kinase interacting (KIP1-like) family protein -0.8 0.31 -0.32
91 AT2G41220 glutamate synthase 2 glutamate synthase 2 -0.8 0.32 -0.33
92 AT1G12360 Sec1/munc18-like (SM) proteins superfamily keule -0.79 0.31 -0.32
93 AT2G23450 Protein kinase superfamily protein -0.78 0.33 -0.3
94 AT3G20250 pumilio 5 pumilio 5, pumilio 5 -0.78 0.32 -0.3
95 AT4G10050 esterase/lipase/thioesterase family protein -0.78 0.29 -0.3
96 AT1G64060 respiratory burst oxidase protein F respiratory burst oxidase protein
F, ARABIDOPSIS THALIANA
RESPIRATORY BURST OXIDASE HOMOLOG
F, respiratory burst oxidase
protein F, RBOHAP108, RESPIRATORY
BURST OXIDASE PROTEIN F		 -0.78 0.32 -0.33
97 AT3G45040 phosphatidate cytidylyltransferase family protein -0.77 0.31 -0.31
98 AT2G47950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root, flower; EXPRESSED
DURING: petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G62990.1); Has 22 Blast hits to 22 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.77 0.3 -0.33
99 AT4G16110 response regulator 2 response regulator 2, response
regulator 2		 -0.77 0.32 -0.31
100 AT5G50780 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 -0.76 0.31 -0.32
101 AT1G72700 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.76 0.32 -0.3
102 AT1G18260 HCP-like superfamily protein EMS-mutagenized bri1 suppressor 5,
HRD3A		 -0.76 0.34 -0.34
103 AT2G31260 autophagy 9 (APG9) autophagy 9, ATAPG9 -0.76 0.3 -0.32
104 AT5G57150 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.76 0.32 -0.33
105 AT1G65660 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 1 -0.76 0.34 -0.35
106 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.75 0.3 -0.31
107 AT5G28510 beta glucosidase 24 beta glucosidase 24 -0.75 0.33 -0.32
108 AT5G23580 calmodulin-like domain protein kinase 9 ARABIDOPSIS THALIANA
CALMODULIN-LIKE DOMAIN PROTEIN
KINASE 9, ATCPK12, calmodulin-like
domain protein kinase 9,
CALCIUM-DEPENDENT PROTEIN KINASE
12		 -0.74 0.29 -0.32
109 AT3G57520 seed imbibition 2 seed imbibition 2, raffinose
synthase 2, seed imbibition 2		 -0.74 0.32 -0.3
110 AT5G46340 O-acetyltransferase family protein REDUCED WALL ACETYLATION 1 -0.74 0.31 -0.34
111 AT3G01100 hypothetical protein 1 ARABIDOPSIS THALIANA HYPOTHETICAL
PROTEIN 1, hypothetical protein 1		 -0.74 0.34 -0.32
112 AT4G24520 P450 reductase 1 ARABIDOPSIS CYTOCHROME REDUCTASE,
P450 reductase 1		 -0.74 0.3 -0.32
113 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein -0.74 0.31 -0.32
114 AT1G26730 EXS (ERD1/XPR1/SYG1) family protein -0.73 0.29 -0.32
115 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.73 0.29 -0.32
116 AT4G02360 Protein of unknown function, DUF538 -0.73 0.32 -0.31
117 AT1G09960 sucrose transporter 4 SUCROSE TRANSPORTER 4, SUCROSE
TRANSPORTER 4, SUCROSE TRANSPORTER
4, sucrose transporter 4		 -0.73 0.33 -0.33
118 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 -0.72 0.31 -0.32
119 AT3G49810 ARM repeat superfamily protein -0.72 0.3 -0.33
120 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein -0.72 0.32 -0.31
121 AT3G62590 alpha/beta-Hydrolases superfamily protein -0.72 0.34 -0.3
122 AT5G13010 RNA helicase family protein embryo defective 3011 -0.71 0.34 -0.32
123 AT1G29760 Putative adipose-regulatory protein (Seipin) -0.71 0.3 -0.32
124 AT3G11480 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ATBSMT1, BSMT1 -0.71 0.3 -0.3
125 AT2G22300 signal responsive 1 CALMODULIN-BINDING TRANSCRIPTION
ACTIVATOR 3, signal responsive 1		 -0.71 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
126 C0220 Pyruvic acid - Pyruvate sucrose degradation to ethanol and lactate (anaerobic),
alanine degradation II (to D-lactate),
alanine degradation III,
glutamine biosynthesis III,
pyruvate fermentation to ethanol II,
serine racemization,
methylerythritol phosphate pathway,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
valine biosynthesis,
seleno-amino acid biosynthesis,
phenylalanine degradation III,
an electron-transfer-related quinone + D-lactate -> an electron-transfer-related quinol + pyruvate,
tetrahydrofolate biosynthesis II,
methylglyoxal degradation I,
glycolysis I,
tryptophan biosynthesis,
salicylate biosynthesis I,
pyruvate fermentation to lactate,
methionine biosynthesis II,
glutathione-mediated detoxification II,
IAA biosynthesis I,
TCA cycle variation V (plant),
Rubisco shunt,
gluconeogenesis I,
acetaldehyde biosynthesis I,
homocysteine and cysteine interconversion,
glycolysis IV (plant cytosol),
4-aminobutyrate degradation IV,
beta-alanine biosynthesis II,
isoleucine biosynthesis I (from threonine),
glutamate degradation IV,
lysine biosynthesis VI,
acetyl-CoA biosynthesis (from pyruvate),
alanine biosynthesis II 		-0.76 0.43 -0.44 C0220
127 C0188 Nicotine (-)-Nicotine Nicotine - -0.71 0.44 -0.46 C0188