AT4G26430 : COP9 signalosome subunit 6B
Query Information
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AGICode AT4G26430
Description COP9 signalosome subunit 6B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G26430 COP9 signalosome subunit 6B COP9 signalosome subunit 6B 1 0.32 -0.32
2 AT3G19980 flower-specific, phytochrome-associated protein phosphatase
3		 flower-specific,
phytochrome-associated protein
phosphatase 3, EMBRYO DEFECTIVE
2736, flower-specific,
phytochrome-associated protein
phosphatase 3, SERINE/THREONINE
PROTEIN PHOSPHATASE		 0.87 0.31 -0.31
3 AT2G43770 Transducin/WD40 repeat-like superfamily protein 0.86 0.3 -0.3
4 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 -0.84 0.35 -0.31
5 AT1G51510 RNA-binding (RRM/RBD/RNP motifs) family protein Y14 0.82 0.31 -0.31
6 AT3G07300 NagB/RpiA/CoA transferase-like superfamily protein 0.8 0.3 -0.33
7 AT2G46230 PIN domain-like family protein 0.8 0.31 -0.31
8 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 0.8 0.33 -0.32
9 AT3G59990 methionine aminopeptidase 2B methionine aminopeptidase 2B 0.8 0.32 -0.31
10 AT3G25940 TFIIB zinc-binding protein 0.79 0.32 -0.32
11 AT3G04830 Protein prenylyltransferase superfamily protein 0.79 0.31 -0.33
12 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.79 0.31 -0.29
13 AT5G20570 RING-box 1 RING-BOX 1, HRT1, RING-box 1,
REGULATOR OF CULLINS-1		 0.79 0.31 -0.31
14 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.79 0.31 -0.31
15 AT1G22270 Trm112p-like protein 0.79 0.33 -0.32
16 AT3G19630 Radical SAM superfamily protein 0.78 0.3 -0.32
17 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 0.78 0.31 -0.31
18 AT4G28540 casein kinase I-like 6 casein kinase I-like 6, PAPK1 0.78 0.33 -0.32
19 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 0.77 0.31 -0.31
20 AT1G13870 calmodulin binding;purine nucleotide binding AtKTI12, DEFORMED ROOTS AND LEAVES
1		 0.77 0.32 -0.33
21 AT4G38890 FMN-linked oxidoreductases superfamily protein 0.77 0.31 -0.3
22 AT4G34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein,
putative / gamma-2 COP, putative		 0.76 0.3 -0.31
23 AT5G14240 Thioredoxin superfamily protein 0.76 0.32 -0.29
24 AT3G49990 unknown protein; Has 1524 Blast hits to 1298 proteins in
225 species: Archae - 9; Bacteria - 84; Metazoa - 474;
Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes -
658 (source: NCBI BLink).		 0.76 0.32 -0.32
25 AT2G44610 Ras-related small GTP-binding family protein ATRAB6A, ATRABH1B, RAB6, RAB6A 0.76 0.31 -0.3
26 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 0.76 0.32 -0.31
27 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.76 0.33 -0.31
28 AT2G02880 mucin-related 0.76 0.32 -0.31
29 AT1G07570 Protein kinase superfamily protein APK1, APK1A 0.75 0.31 -0.29
30 AT2G43260 F-box and associated interaction domains-containing protein 0.75 0.31 -0.32
31 AT5G56130 Transducin/WD40 repeat-like superfamily protein AtTEX1, TEX1, THO3 0.75 0.32 -0.31
32 AT2G31360 16:0delta9 desaturase 2 16:0delta9 desaturase 2,
16:0delta9 desaturase 2		 0.75 0.33 -0.33
33 AT2G37020 Translin family protein 0.75 0.33 -0.32
34 AT3G53340 nuclear factor Y, subunit B10 nuclear factor Y, subunit B10 0.75 0.3 -0.32
35 AT3G29360 UDP-glucose 6-dehydrogenase family protein UDP-glucose dehydrogenase 2 0.75 0.31 -0.3
36 AT3G47670 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.75 0.32 -0.32
37 AT3G19760 eukaryotic initiation factor 4A-III eukaryotic initiation factor
4A-III		 0.75 0.31 -0.32
38 AT3G57340 Heat shock protein DnaJ, N-terminal with domain of unknown
function (DUF1977)		 0.75 0.33 -0.32
39 AT5G11010 Pre-mRNA cleavage complex II protein family 0.75 0.34 -0.29
40 AT1G72340 NagB/RpiA/CoA transferase-like superfamily protein 0.75 0.33 -0.32
41 AT3G49910 Translation protein SH3-like family protein 0.74 0.32 -0.33
42 AT3G50110 PTEN 3 Arabidopsis thaliana phosphatase
and TENsin homolog deleted on
chromosome ten 3, PTEN 3,
phosphatase and TENsin homolog
deleted on chromosome ten 2B		 0.74 0.31 -0.33
43 AT4G38060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.31 -0.32
44 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.74 0.31 -0.32
45 AT2G34590 Transketolase family protein 0.74 0.31 -0.29
46 AT5G44110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette A21,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN, ATPOP1, POP1		 0.74 0.34 -0.31
47 AT1G12650 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF947 (InterPro:IPR009292); Has 700 Blast
hits to 631 proteins in 192 species: Archae - 0; Bacteria -
32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0;
Other Eukaryotes - 302 (source: NCBI BLink).		 0.74 0.32 -0.3
48 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 0.74 0.31 -0.3
49 AT3G53500 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32		 0.74 0.31 -0.33
50 AT3G12860 NOP56-like pre RNA processing ribonucleoprotein 0.74 0.32 -0.33
51 AT3G06790 plastid developmental protein DAG, putative 0.73 0.34 -0.33
52 AT5G19050 alpha/beta-Hydrolases superfamily protein 0.73 0.31 -0.29
53 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein 0.73 0.3 -0.32
54 AT1G55150 DEA(D/H)-box RNA helicase family protein 0.73 0.3 -0.32
55 AT5G49720 glycosyl hydrolase 9A1 glycosyl hydrolase 9A1, DEFECTIVE
CYTOKINESIS, glycosyl hydrolase
9A1, IRREGULAR XYLEM 2, KORRIGAN,
KORRIGAN 1, RADIALLY SWOLLEN 2,
TUMOROUS SHOOT DEVELOPMENT 1		 0.73 0.3 -0.31
56 AT1G10430 protein phosphatase 2A-2 protein phosphatase 2A-2 0.73 0.32 -0.32
57 AT1G48430 Dihydroxyacetone kinase -0.72 0.31 -0.33
58 AT1G75180 Erythronate-4-phosphate dehydrogenase family protein 0.72 0.34 -0.33
59 AT3G28200 Peroxidase superfamily protein 0.72 0.3 -0.31
60 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.72 0.31 -0.31
61 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 0.72 0.31 -0.28
62 AT2G23070 Protein kinase superfamily protein 0.71 0.3 -0.31
63 AT1G71900 Protein of unknown function (DUF803) 0.71 0.31 -0.29
64 AT1G67620 Lojap-related protein 0.71 0.33 -0.29
65 AT2G29700 pleckstrin homologue 1 pleckstrin homologue 1, pleckstrin
homologue 1		 0.71 0.34 -0.3
66 AT3G49720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, Golgi apparatus, plasma
membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.31 -0.31
67 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 0.71 0.3 -0.32
68 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.71 0.3 -0.32
69 AT1G18330 Homeodomain-like superfamily protein EARLY-PHYTOCHROME-RESPONSIVE1,
REVEILLE 7		 0.71 0.31 -0.34
70 AT4G09570 calcium-dependent protein kinase 4 ATCPK4, calcium-dependent protein
kinase 4		 0.71 0.32 -0.34
71 AT1G30480 D111/G-patch domain-containing protein DNA-DAMAGE-REPAIR/TOLERATION
PROTEIN 111		 0.71 0.32 -0.32
72 AT2G01860 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 975 0.71 0.34 -0.3
73 AT3G05420 acyl-CoA binding protein 4 acyl-CoA binding protein 4 0.71 0.32 -0.31
74 AT5G57460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to
166 proteins in 41 species: Archae - 0; Bacteria - 0;
Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 0.7 0.33 -0.32
75 AT4G08420 transposable element gene 0.7 0.28 -0.3
76 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.7 0.33 -0.33
77 AT1G60620 RNA polymerase I subunit 43 RNA polymerase I subunit 43, RNA
polymerase I subunit 43		 0.7 0.32 -0.32
78 AT5G59460 scarecrow-like transcription factor 11 (SCL11) 0.7 0.33 -0.32
79 AT4G27090 Ribosomal protein L14 0.7 0.34 -0.31
80 AT4G01990 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.34 -0.29
81 AT1G07360 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5A 0.7 0.33 -0.35
82 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.7 0.32 -0.31
83 AT1G78130 Major facilitator superfamily protein unfertilized embryo sac 2 -0.7 0.34 -0.31
84 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.7 0.3 -0.33
85 AT4G17640 casein kinase II beta chain 2 casein kinase II beta chain 2 0.7 0.31 -0.3
86 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.69 0.31 -0.3
87 AT2G25690 Protein of unknown function (DUF581) -0.69 0.31 -0.31
88 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 -0.69 0.32 -0.29
89 AT5G51290 Diacylglycerol kinase family protein -0.68 0.31 -0.32
90 AT3G12720 myb domain protein 67 myb domain protein 67, ATY53,
MYB67, myb domain protein 67		 -0.67 0.32 -0.31
91 AT4G27850 Glycine-rich protein family -0.67 0.31 -0.32
92 AT2G15440 Protein of unknown function (DUF579) -0.67 0.32 -0.32
93 AT1G16730 unknown protein 6 unknown protein 6 -0.67 0.32 -0.3
94 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.66 0.29 -0.32
95 AT3G52080 cation/hydrogen exchanger 28 cation/hydrogen exchanger 28 -0.65 0.33 -0.31
96 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 -0.65 0.3 -0.3
97 AT5G12460 Protein of unknown function (DUF604) -0.64 0.3 -0.32
98 AT4G30960 SOS3-interacting protein 3 CBL-INTERACTING PROTEIN KINASE 6,
CBL-INTERACTING PROTEIN KINASE 6,
SOS3-interacting protein 3,
SNF1-RELATED PROTEIN KINASE 3.14		 -0.64 0.31 -0.33
99 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.63 0.34 -0.32
100 AT5G35670 IQ-domain 33 IQ-domain 33 -0.63 0.31 -0.31
101 AT5G26190 Cysteine/Histidine-rich C1 domain family protein -0.63 0.31 -0.3
102 AT5G52460 FBD, F-box and Leucine Rich Repeat domains containing
protein		 embryo sac development arrest 41 -0.63 0.31 -0.31
103 AT2G19130 S-locus lectin protein kinase family protein -0.62 0.32 -0.3
104 AT4G22840 Sodium Bile acid symporter family -0.62 0.34 -0.29
105 AT4G21550 VP1/ABI3-like 3 VP1/ABI3-like 3 -0.61 0.32 -0.33
106 AT3G52830 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is: Ankyrin
repeat family protein (TAIR:AT5G54700.1); Has 6 Blast hits
to 6 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.61 0.33 -0.31
107 AT5G24150 FAD/NAD(P)-binding oxidoreductase family protein SQUALENE MONOOXYGENASE 5, SQP1 -0.61 0.32 -0.32
108 AT3G55850 Amidohydrolase family LONG AFTER FAR-RED 3, LONG AFTER
FAR-RED 3 ISOFORM 1, LAF3 ISOFORM
2		 -0.61 0.29 -0.33
109 AT4G14180 putative recombination initiation defect 1 putative recombination initiation
defect 1, putative recombination
initiation defect 1		 -0.6 0.32 -0.33
110 AT1G63560 Receptor-like protein kinase-related family protein -0.6 0.31 -0.32
111 AT1G34140 poly(A) binding protein 1 poly(A) binding protein 1 -0.6 0.32 -0.32
112 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 -0.59 0.32 -0.33
113 AT3G19040 histone acetyltransferase of the TAFII250 family 2 histone acetyltransferase of the
TAFII250 family 2, TBP-ASSOCIATED
FACTOR 1, TBP-ASSOCIATED FACTOR 1B		 -0.59 0.3 -0.33
114 AT4G04500 cysteine-rich RLK (RECEPTOR-like protein kinase) 37 cysteine-rich RLK (RECEPTOR-like
protein kinase) 37		 -0.59 0.33 -0.3
115 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 -0.59 0.31 -0.33
116 AT4G21326 subtilase 3.12 subtilase 3.12, subtilase 3.12 -0.58 0.29 -0.29
117 AT5G58390 Peroxidase superfamily protein -0.58 0.35 -0.3
118 AT1G30160 Protein of unknown function (DUF295) -0.58 0.34 -0.29
119 AT3G28120 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.58 0.3 -0.33
120 AT4G31280 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.58 0.31 -0.32
121 AT5G64530 xylem NAC domain 1 Arabidopsis NAC domain containing
protein 104, xylem NAC domain 1		 -0.57 0.31 -0.33
122 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 -0.57 0.3 -0.3
123 AT5G66420 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP033271 (InterPro:IPR008322), TIM-barrel signal
transduction protein, predicted (InterPro:IPR009215); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.57 0.3 -0.3
124 AT3G05830 Encodes alpha-helical IF (intermediate filament)-like
protein.		 -0.57 0.31 -0.31
125 AT1G59820 aminophospholipid ATPase 3 aminophospholipid ATPase 3 -0.57 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
126 C0031 3-Methylthio-n-propylglucosinolate - 3-Methylthiopropylglucosinolate glucosinolate biosynthesis from homomethionine 0.74 0.42 -0.45 C0031