AT4G25890 : -
Query Information
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AGICode AT4G25890
Description 60S acidic ribosomal protein family
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G25890 60S acidic ribosomal protein family 1 0.31 -0.33
2 AT4G25740 RNA binding Plectin/S10 domain-containing protein 0.92 0.32 -0.32
3 AT3G53020 Ribosomal protein L24e family protein RIBOSOMAL PROTEIN L24, RPL24B,
SHORT VALVE1		 0.91 0.31 -0.31
4 AT5G61170 Ribosomal protein S19e family protein 0.91 0.31 -0.33
5 AT2G36620 ribosomal protein L24 ribosomal protein L24 0.91 0.32 -0.31
6 AT2G32060 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.9 0.32 -0.33
7 AT5G67510 Translation protein SH3-like family protein 0.9 0.32 -0.3
8 AT1G17560 Ribosomal protein L14p/L23e family protein HUELLENLOS 0.9 0.32 -0.31
9 AT3G07110 Ribosomal protein L13 family protein 0.9 0.34 -0.31
10 AT2G20450 Ribosomal protein L14 0.9 0.34 -0.31
11 AT5G47700 60S acidic ribosomal protein family 0.89 0.33 -0.33
12 AT1G54690 gamma histone variant H2AX GAMMA H2AX, gamma histone variant
H2AX, H2AXB, histone H2A 3		 0.89 0.31 -0.3
13 AT1G67430 Ribosomal protein L22p/L17e family protein 0.89 0.32 -0.32
14 AT2G01250 Ribosomal protein L30/L7 family protein 0.89 0.32 -0.32
15 AT3G23390 Zinc-binding ribosomal protein family protein 0.89 0.29 -0.33
16 AT3G05590 ribosomal protein L18 ribosomal protein L18 0.89 0.32 -0.32
17 AT2G39390 Ribosomal L29 family protein 0.89 0.33 -0.31
18 AT2G19730 Ribosomal L28e protein family 0.89 0.3 -0.32
19 AT3G06680 Ribosomal L29e protein family 0.89 0.33 -0.33
20 AT3G16780 Ribosomal protein L19e family protein 0.89 0.3 -0.31
21 AT5G44130 FASCICLIN-like arabinogalactan protein 13 precursor FASCICLIN-like arabinogalactan
protein 13 precursor		 0.88 0.34 -0.32
22 AT3G04840 Ribosomal protein S3Ae 0.88 0.32 -0.3
23 AT1G04480 Ribosomal protein L14p/L23e family protein 0.88 0.33 -0.31
24 AT1G34030 Ribosomal protein S13/S18 family 0.88 0.32 -0.3
25 AT1G29250 Alba DNA/RNA-binding protein 0.88 0.31 -0.32
26 AT3G56340 Ribosomal protein S26e family protein 0.88 0.31 -0.33
27 AT3G55280 ribosomal protein L23AB RIBOSOMAL PROTEIN L23A2, ribosomal
protein L23AB		 0.88 0.32 -0.32
28 AT4G16720 Ribosomal protein L23/L15e family protein 0.87 0.32 -0.33
29 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 0.87 0.33 -0.32
30 AT5G39740 ribosomal protein L5 B OLIGOCELLULA 7, ribosomal protein
L5 B		 0.87 0.31 -0.32
31 AT2G36170 Ubiquitin supergroup;Ribosomal protein L40e 0.87 0.28 -0.34
32 AT2G27720 60S acidic ribosomal protein family 0.87 0.31 -0.32
33 AT1G72370 40s ribosomal protein SA AP40, 40s ribosomal protein SA,
RP40, RPSAA		 0.87 0.32 -0.3
34 AT4G31700 ribosomal protein S6 ribosomal protein S6, RPS6A 0.87 0.32 -0.31
35 AT3G60770 Ribosomal protein S13/S15 0.87 0.32 -0.32
36 AT2G45730 eukaryotic initiation factor 3 gamma subunit family protein 0.87 0.31 -0.31
37 AT1G07370 proliferating cellular nuclear antigen 1 PROLIFERATING CELLULAR NUCLEAR
ANTIGEN 1, proliferating cellular
nuclear antigen 1		 0.87 0.33 -0.31
38 AT3G09200 Ribosomal protein L10 family protein 0.87 0.33 -0.33
39 AT4G10480 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein		 0.87 0.33 -0.31
40 AT2G39460 ribosomal protein L23AA ARABIDOPSIS THALIANA RIBOSOMAL
PROTEIN L23A, RIBOSOMAL PROTEIN
L23A, RIBOSOMAL PROTEIN L23A1,
ribosomal protein L23AA		 0.87 0.31 -0.3
41 AT2G33370 Ribosomal protein L14p/L23e family protein 0.86 0.32 -0.31
42 AT1G18540 Ribosomal protein L6 family protein 0.86 0.33 -0.31
43 AT3G04770 40s ribosomal protein SA B 40s ribosomal protein SA B 0.86 0.31 -0.31
44 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 0.86 0.32 -0.35
45 AT3G47370 Ribosomal protein S10p/S20e family protein 0.86 0.31 -0.35
46 AT1G26880 Ribosomal protein L34e superfamily protein 0.86 0.31 -0.32
47 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 0.86 0.31 -0.3
48 AT1G07070 Ribosomal protein L35Ae family protein 0.86 0.31 -0.31
49 AT3G12390 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein		 0.86 0.32 -0.32
50 AT4G26230 Ribosomal protein L31e family protein 0.86 0.31 -0.31
51 AT4G05400 copper ion binding 0.85 0.31 -0.3
52 AT4G17520 Hyaluronan / mRNA binding family 0.85 0.3 -0.32
53 AT5G56710 Ribosomal protein L31e family protein 0.85 0.33 -0.32
54 AT5G57290 60S acidic ribosomal protein family 0.85 0.33 -0.3
55 AT2G45180 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.85 0.32 -0.31
56 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 0.85 0.31 -0.31
57 AT1G52300 Zinc-binding ribosomal protein family protein 0.85 0.31 -0.31
58 AT3G62120 Class II aaRS and biotin synthetases superfamily protein 0.85 0.33 -0.33
59 AT3G44590 60S acidic ribosomal protein family 0.85 0.32 -0.31
60 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 0.85 0.32 -0.34
61 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 0.84 0.34 -0.32
62 AT2G27710 60S acidic ribosomal protein family 0.84 0.32 -0.31
63 AT5G35620 Eukaryotic initiation factor 4E protein EUKARYOTIC INITIATION FACTOR
(ISO)4E, EUKARYOTIC TRANSLATION
INITATION FACTOR 4E2, eukaryotic
translation Initiation Factor
isoform 4E, LSP, LOSS OF
SUSCEPTIBILITY TO POTYVIRUS 1		 0.84 0.34 -0.31
64 AT3G06610 DNA-binding enhancer protein-related 0.84 0.32 -0.32
65 AT4G34555 Ribosomal protein S25 family protein 0.84 0.32 -0.31
66 AT3G53430 Ribosomal protein L11 family protein 0.84 0.32 -0.3
67 AT2G27840 histone deacetylase-related / HD-related HISTONE DEACETYLASE 13, HDT04,
HDT4		 0.84 0.31 -0.33
68 AT3G11510 Ribosomal protein S11 family protein 0.84 0.33 -0.34
69 AT3G11400 eukaryotic translation initiation factor 3G1 ATEIF3G1, eukaryotic translation
initiation factor 3G1		 0.84 0.3 -0.31
70 AT5G27770 Ribosomal L22e protein family 0.84 0.3 -0.31
71 AT1G14980 chaperonin 10 chaperonin 10 0.84 0.31 -0.34
72 AT3G49590 Autophagy-related protein 13 autophagy-related 13 -0.84 0.31 -0.3
73 AT1G17550 homology to ABI2 homology to ABI2 -0.84 0.31 -0.31
74 AT3G18130 receptor for activated C kinase 1C receptor for activated C kinase
1C, receptor for activated C
kinase 1C		 0.84 0.31 -0.32
75 AT3G09630 Ribosomal protein L4/L1 family 0.84 0.32 -0.34
76 AT1G48830 Ribosomal protein S7e family protein 0.83 0.32 -0.34
77 AT2G44120 Ribosomal protein L30/L7 family protein 0.83 0.32 -0.34
78 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.83 0.31 -0.31
79 AT1G61580 R-protein L3 B ARABIDOPSIS RIBOSOMAL PROTEIN 2,
R-protein L3 B		 0.83 0.31 -0.3
80 AT1G09815 polymerase delta 4 polymerase delta 4 0.83 0.33 -0.32
81 AT1G23290 Ribosomal protein L18e/L15 superfamily protein RIBOSOMAL PROTEIN L27A, RPL27AB 0.83 0.33 -0.34
82 AT3G60245 Zinc-binding ribosomal protein family protein 0.83 0.3 -0.29
83 AT5G52650 RNA binding Plectin/S10 domain-containing protein 0.83 0.3 -0.29
84 AT1G77750 Ribosomal protein S13/S18 family 0.83 0.32 -0.32
85 AT3G04400 Ribosomal protein L14p/L23e family protein embryo defective 2171 0.82 0.31 -0.3
86 AT2G45710 Zinc-binding ribosomal protein family protein 0.82 0.33 -0.31
87 AT1G04190 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 3 0.82 0.3 -0.32
88 AT1G51060 histone H2A 10 histone H2A 10 0.82 0.33 -0.31
89 AT5G05990 Mitochondrial glycoprotein family protein 0.82 0.33 -0.31
90 AT1G79650 Rad23 UV excision repair protein family Arabidopsis thaliana aldehyde
oxidase 1, RADIATION SENSITIVE23B		 0.82 0.33 -0.32
91 AT3G09770 RING/U-box superfamily protein LOSS OF GDU 2 -0.82 0.31 -0.3
92 AT3G16080 Zinc-binding ribosomal protein family protein 0.82 0.32 -0.32
93 AT3G46940 DUTP-PYROPHOSPHATASE-LIKE 1 DUTP-PYROPHOSPHATASE-LIKE 1 0.82 0.31 -0.32
94 AT3G55010 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast
/ phosphoribosyl-aminoimidazole synthetase / AIR synthase
(PUR5)		 ATPURM, EMBRYO DEFECTIVE 2818,
PUR5		 0.82 0.33 -0.32
95 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein		 0.82 0.32 -0.3
96 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 0.82 0.32 -0.32
97 AT5G64816 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.81 0.34 -0.3
98 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 0.81 0.31 -0.3
99 AT1G22920 COP9 signalosome 5A ARABIDOPSIS JAB1 HOMOLOG 1, COP9
signalosome 5A, JAB1		 0.81 0.3 -0.32
100 AT1G14320 Ribosomal protein L16p/L10e family protein ribosomal protein L10, ribosomal
protein L10 A, SUPPRESSOR OF
ACAULIS 52		 0.81 0.32 -0.32
101 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.81 0.34 -0.33
102 AT3G19360 Zinc finger (CCCH-type) family protein 0.81 0.33 -0.33
103 AT1G04040 HAD superfamily, subfamily IIIB acid phosphatase 0.81 0.34 -0.33
104 AT4G03030 Galactose oxidase/kelch repeat superfamily protein -0.81 0.32 -0.32
105 AT3G43810 calmodulin 7 calmodulin 7 0.81 0.31 -0.3
106 AT4G28490 Leucine-rich receptor-like protein kinase family protein HAESA, RECEPTOR-LIKE PROTEIN
KINASE 5		 -0.81 0.31 -0.32
107 AT2G40290 Eukaryotic translation initiation factor 2 subunit 1 0.81 0.32 -0.31
108 AT2G32380 Transmembrane protein 97, predicted 0.81 0.31 -0.31
109 AT3G16940 calmodulin binding;transcription regulators -0.8 0.32 -0.3
110 AT5G18130 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.8 0.32 -0.31
111 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.8 0.3 -0.3
112 AT1G20880 RNA-binding (RRM/RBD/RNP motifs) family protein -0.8 0.33 -0.31
113 AT5G49660 Leucine-rich repeat transmembrane protein kinase family
protein		 XYLEM INTERMIXED WITH PHLOEM 1 -0.8 0.33 -0.33
114 AT5G59220 highly ABA-induced PP2C gene 1 highly ABA-induced PP2C gene 1,
senescence associated gene 113		 -0.79 0.32 -0.3
115 AT5G18640 alpha/beta-Hydrolases superfamily protein -0.79 0.33 -0.33
116 AT3G53960 Major facilitator superfamily protein -0.78 0.31 -0.31
117 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 -0.78 0.31 -0.3
118 AT1G28960 nudix hydrolase homolog 15 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 15, nudix
hydrolase homolog 15, nudix
hydrolase homolog 15		 -0.78 0.31 -0.29
119 AT3G28007 Nodulin MtN3 family protein AtSWEET4, SWEET4 -0.78 0.3 -0.32
120 AT3G24740 Protein of unknown function (DUF1644) -0.78 0.3 -0.32
121 AT3G61960 Protein kinase superfamily protein -0.78 0.31 -0.31
122 AT3G11420 Protein of unknown function (DUF604) -0.78 0.3 -0.34
123 AT2G38790 unknown protein; Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.77 0.32 -0.28
124 AT1G24070 cellulose synthase-like A10 cellulose synthase-like A10,
CELLULOSE SYNTHASE LIKE A10,
cellulose synthase-like A10		 -0.77 0.33 -0.32
125 AT1G03080 kinase interacting (KIP1-like) family protein -0.77 0.32 -0.33
126 AT3G25620 ABC-2 type transporter family protein ATP-binding cassette G21 -0.77 0.31 -0.28
127 AT4G27410 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 72, RESPONSIVE TO
DESICCATION 26		 -0.77 0.3 -0.33
128 AT3G23920 beta-amylase 1 beta-amylase 1, BETA-AMYLASE 7,
TR-BAMY		 -0.76 0.32 -0.32
129 AT5G28520 Mannose-binding lectin superfamily protein -0.76 0.33 -0.32
130 AT1G58360 amino acid permease 1 amino acid permease 1, NEUTRAL
AMINO ACID TRANSPORTER 2		 -0.76 0.3 -0.32
131 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 -0.76 0.35 -0.32
132 AT1G28260 Telomerase activating protein Est1 -0.76 0.33 -0.31
133 AT1G07040 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in
187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi
- 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140
(source: NCBI BLink).		 -0.76 0.32 -0.3
134 AT4G35790 phospholipase D delta ARABIDOPSIS THALIANA PHOSPHOLIPASE
D DELTA, phospholipase D delta		 -0.75 0.32 -0.33
135 AT1G12360 Sec1/munc18-like (SM) proteins superfamily keule -0.75 0.31 -0.31
136 AT1G67300 Major facilitator superfamily protein -0.75 0.32 -0.31
137 AT1G42470 Patched family protein -0.75 0.31 -0.31
138 AT2G22430 homeobox protein 6 homeobox protein 6, homeobox
protein 6		 -0.75 0.31 -0.34
139 AT3G20300 Protein of unknown function (DUF3537) -0.75 0.32 -0.31
140 AT3G10550 Myotubularin-like phosphatases II superfamily Arabidopsis thaliana myotubularin
1, myotubularin 1		 -0.75 0.33 -0.31
141 AT2G44130 Galactose oxidase/kelch repeat superfamily protein -0.75 0.31 -0.32
142 AT1G55110 indeterminate(ID)-domain 7 indeterminate(ID)-domain 7,
indeterminate(ID)-domain 7		 -0.74 0.31 -0.31
143 AT3G06500 Plant neutral invertase family protein alkaline/neutral invertase C -0.74 0.31 -0.33
144 AT1G62310 transcription factor jumonji (jmjC) domain-containing
protein		 -0.74 0.3 -0.32
145 AT5G57550 xyloglucan endotransglucosylase/hydrolase 25 xyloglucan
endotransglucosylase/hydrolase 25,
xyloglucan endotransglycosylase 3		 -0.74 0.31 -0.31
146 AT4G36040 Chaperone DnaJ-domain superfamily protein DnaJ11 -0.74 0.31 -0.32
147 AT4G18160 Ca2+ activated outward rectifying K+ channel 6 CA2+ ACTIVATED OUTWARD RECTIFYING
K+ CHANNEL 6, ATTPK3, Ca2+
activated outward rectifying K+
channel 6, TPK3		 -0.74 0.32 -0.31
148 AT3G62590 alpha/beta-Hydrolases superfamily protein -0.74 0.32 -0.31
149 AT1G29400 MEI2-like protein 5 MEI2-like protein 5, MEI2-like
protein 5		 -0.73 0.3 -0.3
150 AT5G22850 Eukaryotic aspartyl protease family protein -0.73 0.31 -0.32
151 AT2G17700 ACT-like protein tyrosine kinase family protein serine/threonine/tyrosine kinase 8 -0.73 0.29 -0.31
152 AT4G38350 Patched family protein -0.73 0.32 -0.32
153 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.73 0.31 -0.31
154 AT1G65580 Endonuclease/exonuclease/phosphatase family protein FRAGILE FIBER3 -0.73 0.33 -0.3
155 AT2G18170 MAP kinase 7 MAP kinase 7, MAP kinase 7 -0.73 0.31 -0.3
156 AT3G60140 Glycosyl hydrolase superfamily protein BETA GLUCOSIDASE 30, DARK
INDUCIBLE 2, SENESCENCE-RELATED
GENE 2		 -0.72 0.31 -0.32
157 AT5G19420 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 -0.72 0.31 -0.31
158 AT2G28400 Protein of unknown function, DUF584 -0.72 0.31 -0.31
159 AT5G57050 Protein phosphatase 2C family protein ABA INSENSITIVE 2, AtABI2 -0.72 0.31 -0.34
160 AT1G63720 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in
96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi
- 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79
(source: NCBI BLink).		 -0.72 0.34 -0.32
161 AT3G01560 Protein of unknown function (DUF1421) -0.72 0.31 -0.31
162 AT1G31480 shoot gravitropism 2 (SGR2) SHOOT GRAVITROPISM 2 -0.71 0.3 -0.32
163 AT2G40460 Major facilitator superfamily protein -0.71 0.31 -0.31
164 AT2G01460 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.71 0.32 -0.3
165 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.71 0.32 -0.32
166 AT5G35560 DENN (AEX-3) domain-containing protein -0.71 0.32 -0.29
167 AT3G05640 Protein phosphatase 2C family protein -0.71 0.32 -0.31
168 AT1G27200 Domain of unknown function (DUF23) -0.71 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
169 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - -0.79 0.44 -0.47
170 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.78 0.44 -0.46
171 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		-0.72 0.33 -0.32 C0257
172 C0189 Nicotinic acid - Nicotinate pyridine nucleotide cycling (plants),
aldoxime degradation 		-0.71 0.32 -0.3 C0189