AT4G23840 : -
Query Information
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AGICode AT4G23840
Description Leucine-rich repeat (LRR) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G23840 Leucine-rich repeat (LRR) family protein 1 0.31 -0.33
2 AT1G67950 RNA-binding (RRM/RBD/RNP motifs) family protein -0.67 0.34 -0.33
3 AT4G12060 Double Clp-N motif protein -0.66 0.31 -0.32
4 AT1G62850 Class I peptide chain release factor -0.66 0.32 -0.31
5 AT1G52100 Mannose-binding lectin superfamily protein -0.65 0.32 -0.31
6 AT1G30910 Molybdenum cofactor sulfurase family protein -0.64 0.3 -0.33
7 AT5G05680 nuclear pore complex protein-related EMBRYO DEFECTIVE 2789, MODIFIER OF
SNC1,7		 0.64 0.33 -0.32
8 AT4G30970 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.34 -0.32
9 AT3G08610 unknown protein; Has 40 Blast hits to 40 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.33 -0.31
10 AT5G03060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11100.2); Has 14506 Blast
hits to 10808 proteins in 1083 species: Archae - 280;
Bacteria - 2737; Metazoa - 4707; Fungi - 940; Plants - 571;
Viruses - 106; Other Eukaryotes - 5165 (source: NCBI
BLink).		 0.63 0.32 -0.33
11 AT5G65260 RNA-binding (RRM/RBD/RNP motifs) family protein -0.63 0.32 -0.33
12 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.63 0.32 -0.32
13 AT1G64100 pentatricopeptide (PPR) repeat-containing protein 0.63 0.29 -0.32
14 AT5G28050 Cytidine/deoxycytidylate deaminase family protein -0.63 0.34 -0.33
15 AT1G72220 RING/U-box superfamily protein 0.63 0.3 -0.32
16 AT1G44790 ChaC-like family protein -0.63 0.31 -0.32
17 AT5G27660 Trypsin family protein with PDZ domain 0.62 0.31 -0.3
18 AT5G19070 SNARE associated Golgi protein family -0.62 0.32 -0.3
19 AT5G05130 DNA/RNA helicase protein 0.61 0.34 -0.31
20 AT4G30060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.61 0.31 -0.31
21 AT1G18600 RHOMBOID-like protein 12 ARABIDOPSIS RHOMBOID-LIKE PROTEIN
12, RHOMBOID-like protein 12		 -0.6 0.32 -0.32
22 AT1G11710 Pentatricopeptide repeat (PPR) superfamily protein 0.6 0.31 -0.32
23 AT3G10190 Calcium-binding EF-hand family protein 0.6 0.3 -0.31
24 AT4G36380 Cytochrome P450 superfamily protein ROTUNDIFOLIA 3 0.6 0.32 -0.31
25 AT2G22590 UDP-Glycosyltransferase superfamily protein 0.59 0.33 -0.32
26 AT1G45170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits
to 62 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.32 -0.3
27 AT2G05830 NagB/RpiA/CoA transferase-like superfamily protein -0.59 0.33 -0.3
28 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 -0.59 0.3 -0.32
29 AT5G03345 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Magnesium transporter (InterPro:IPR018937); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.29 -0.32
30 AT3G53370 S1FA-like DNA-binding protein -0.58 0.32 -0.3
31 AT5G16660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, membrane,
chloroplast envelope; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.58 0.32 -0.31
32 AT3G06580 Mevalonate/galactokinase family protein GALACTOSE KINASE 1, GALK -0.58 0.31 -0.32
33 AT1G48750 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.58 0.32 -0.31
34 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 -0.58 0.31 -0.3
35 AT2G20270 Thioredoxin superfamily protein -0.58 0.32 -0.31
36 AT2G39710 Eukaryotic aspartyl protease family protein 0.58 0.31 -0.31
37 AT4G00970 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 cysteine-rich RLK (RECEPTOR-like
protein kinase) 41		 0.57 0.31 -0.33
38 AT1G54050 HSP20-like chaperones superfamily protein -0.57 0.31 -0.33
39 AT1G80940 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.57 0.3 -0.33
40 AT3G62440 F-box/RNI-like superfamily protein secondary wall
thickening-associated F-box 1		 0.57 0.31 -0.33
41 AT4G22310 Uncharacterised protein family (UPF0041) -0.57 0.31 -0.32
42 AT5G14550 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.56 0.31 -0.3
43 AT4G13380 Heavy metal transport/detoxification superfamily protein maternal effect embryo arrest 56 -0.56 0.31 -0.32
44 AT2G46735 unknown protein; Has 14 Blast hits to 14 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.31 -0.32
45 AT1G79160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits
to 102 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.31 -0.31
46 AT1G74320 Protein kinase superfamily protein -0.56 0.34 -0.31
47 AT1G67623 F-box family protein 0.56 0.34 -0.31
48 AT1G04290 Thioesterase superfamily protein -0.56 0.33 -0.3
49 AT2G35585 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G31940.1); Has 67 Blast hits
to 67 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.32 -0.3
50 AT3G56840 FAD-dependent oxidoreductase family protein -0.55 0.32 -0.33
51 AT2G29100 glutamate receptor 2.9 glutamate receptor 2.9, GLUTAMATE
RECEPTOR 2.9, glutamate receptor
2.9		 -0.55 0.33 -0.31
52 AT1G70270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits
to 20 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.32 -0.32
53 AT5G40190 RNA ligase/cyclic nucleotide phosphodiesterase family
protein		 -0.55 0.33 -0.31
54 AT3G60020 SKP1-like 5 SKP1-like 5, SKP1-like 5 -0.55 0.3 -0.33
55 AT1G08490 chloroplastic NIFS-like cysteine desulfurase ATCPNIFS, ATNFS2, ATSUFS,
chloroplastic NIFS-like cysteine
desulfurase, SUFS		 -0.55 0.31 -0.32
56 AT3G61160 Protein kinase superfamily protein 0.55 0.3 -0.32
57 AT2G22370 unknown protein; Has 127 Blast hits to 127 proteins in 48
species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.55 0.31 -0.3
58 AT5G08530 51 kDa subunit of complex I 51 kDa subunit of complex I -0.55 0.32 -0.31
59 AT5G36290 Uncharacterized protein family (UPF0016) -0.55 0.31 -0.29
60 AT5G18220 O-Glycosyl hydrolases family 17 protein -0.55 0.32 -0.31
61 AT3G01850 Aldolase-type TIM barrel family protein -0.55 0.31 -0.3
62 AT5G23860 tubulin beta 8 tubulin beta 8 -0.55 0.27 -0.3
63 AT5G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.54 0.35 -0.34
64 AT5G05750 DNAJ heat shock N-terminal domain-containing protein -0.54 0.33 -0.3
65 AT4G26410 Uncharacterised conserved protein UCP022280 -0.54 0.29 -0.32
66 AT5G13610 Protein of unknown function (DUF155) -0.54 0.32 -0.29
67 AT5G23570 XS domain-containing protein / XS zinc finger
domain-containing protein-related		 SUPPRESSOR OF GENE SILENCING 3,
SUPPRESSOR OF GENE SILENCING 3		 0.54 0.29 -0.3
68 AT4G32470 Cytochrome bd ubiquinol oxidase, 14kDa subunit -0.54 0.33 -0.31
69 AT1G15410 aspartate-glutamate racemase family -0.54 0.34 -0.33
70 AT1G69080 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.54 0.32 -0.32
71 AT4G08620 sulphate transporter 1;1 sulphate transporter 1;1 -0.54 0.32 -0.34
72 AT1G59900 pyruvate dehydrogenase complex E1 alpha subunit pyruvate dehydrogenase complex E1
alpha subunit, pyruvate
dehydrogenase complex E1 alpha
subunit		 -0.53 0.32 -0.3
73 AT5G10620 methyltransferases -0.53 0.3 -0.32
74 AT1G47250 20S proteasome alpha subunit F2 20S proteasome alpha subunit F2 -0.53 0.3 -0.32
75 AT5G08535 D111/G-patch domain-containing protein -0.53 0.34 -0.31
76 AT4G07430 transposable element gene -0.53 0.33 -0.3
77 AT5G05560 E3 ubiquitin ligase, putative EMBRYO DEFECTIVE 2771 0.53 0.31 -0.29
78 AT4G08280 Thioredoxin superfamily protein -0.53 0.3 -0.31
79 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 -0.53 0.32 -0.31
80 AT5G62900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.53 0.31 -0.31
81 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 -0.53 0.33 -0.33
82 AT1G77670 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.53 0.32 -0.31
83 AT5G06340 nudix hydrolase homolog 27 nudix hydrolase homolog 27, nudix
hydrolase homolog 27		 -0.53 0.32 -0.3
84 AT4G19130 Replication factor-A protein 1-related 0.53 0.35 -0.32
85 AT2G34800 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.53 0.3 -0.31
86 AT1G11250 syntaxin of plants 125 ATSYP125, syntaxin of plants 125 -0.53 0.31 -0.31
87 AT2G36270 Basic-leucine zipper (bZIP) transcription factor family
protein		 ABA INSENSITIVE 5,
GROWTH-INSENSITIVITY TO ABA 1		 0.52 0.32 -0.31
88 AT3G30180 brassinosteroid-6-oxidase 2 brassinosteroid-6-oxidase 2,
CYP85A2		 0.52 0.32 -0.32
89 AT1G48310 chromatin remodeling factor18 CHA18, chromatin remodeling
factor18		 0.52 0.31 -0.32
90 AT5G03370 acylphosphatase family -0.52 0.33 -0.33
91 AT2G02090 SNF2 domain-containing protein / helicase domain-containing
protein		 CHA19, CHROMATIN REMODELING 19,
ETL1		 0.52 0.28 -0.29
92 AT1G67350 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.52 0.31 -0.31
93 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 -0.52 0.32 -0.3
94 AT2G28060 5'-AMP-activated protein kinase beta-2 subunit protein -0.52 0.3 -0.31
95 AT1G49000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G18560.1); Has
105 Blast hits to 105 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.52 0.3 -0.32
96 AT3G52510 F-box associated ubiquitination effector family protein 0.51 0.31 -0.28
97 AT4G09840 unknown protein; Has 25 Blast hits to 25 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4;
Plants - 9; Viruses - 3; Other Eukaryotes - 5 (source: NCBI
BLink).		 0.51 0.32 -0.31
98 AT2G07693 transposable element gene 0.5 0.32 -0.36
99 AT4G03740 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.5 0.33 -0.31
100 AT3G13840 GRAS family transcription factor 0.5 0.29 -0.31
101 AT1G52500 MUTM homolog-1 A. THALIANA
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
ATMMH-2, FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
MMH-2		 0.5 0.33 -0.33
102 AT5G52330 TRAF-like superfamily protein 0.5 0.3 -0.32
103 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.48 0.3 -0.32
104 AT1G31490 HXXXD-type acyl-transferase family protein 0.48 0.33 -0.3
105 AT4G20910 double-stranded RNA binding protein-related / DsRBD
protein-related		 CORYMBOSA 2, HUA ENHANCER 1 0.48 0.29 -0.33
106 AT3G48950 Pectin lyase-like superfamily protein 0.47 0.32 -0.31
107 AT1G34650 homeodomain GLABROUS 10 homeodomain GLABROUS 10 0.47 0.3 -0.32
108 AT4G29770 Target of trans acting-siR480/255. 0.47 0.33 -0.31
109 AT4G34690 unknown protein; Has 9 Blast hits to 9 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink).		 0.47 0.33 -0.3
110 AT2G01740 Tetratricopeptide repeat (TPR)-like superfamily protein 0.46 0.31 -0.32
111 AT5G18610 Protein kinase superfamily protein 0.46 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
112 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.72 0.45 -0.43 C0131
113 C0183 MST_3033.1 - - - -0.72 0.47 -0.47
114 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine -0.67 0.47 -0.47 C0038
115 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.66 0.47 -0.48 C0033
116 C0130 Kaempferol-3-O-α-rhamnopyranosyl(1,2)-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-α-L-rhamnopyranosyl(1,2)-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside - -0.62 0.48 -0.41