AT4G05590 : -
Query Information
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AGICode AT4G05590
Description CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0041) (TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 1 0.3 -0.32
2 AT5G61640 peptidemethionine sulfoxide reductase 1 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE A1,
peptidemethionine sulfoxide
reductase 1		 0.85 0.31 -0.31
3 AT5G60150 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.82 0.31 -0.33
4 AT4G29060 elongation factor Ts family protein embryo defective 2726 -0.81 0.3 -0.31
5 AT3G04340 FtsH extracellular protease family embryo defective 2458 -0.81 0.33 -0.32
6 AT2G22480 phosphofructokinase 5 phosphofructokinase 5 0.81 0.31 -0.33
7 AT1G17080 Ribosomal protein L18ae family 0.81 0.32 -0.31
8 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.81 0.28 -0.33
9 AT1G79590 syntaxin of plants 52 ATSYP52, syntaxin of plants 52 0.81 0.28 -0.33
10 AT2G01650 plant UBX domain-containing protein 2 plant UBX domain-containing
protein 2		 0.8 0.3 -0.3
11 AT1G12800 Nucleic acid-binding, OB-fold-like protein -0.8 0.3 -0.32
12 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 -0.8 0.3 -0.31
13 AT2G36330 Uncharacterised protein family (UPF0497) 0.8 0.33 -0.3
14 AT1G14030 Rubisco methyltransferase family protein -0.8 0.34 -0.31
15 AT1G10850 Leucine-rich repeat protein kinase family protein -0.79 0.33 -0.31
16 AT2G47220 DOMAIN OF UNKNOWN FUNCTION 724 5 DOMAIN OF UNKNOWN FUNCTION 724 5,
DOMAIN OF UNKNOWN FUNCTION 724 5		 -0.79 0.32 -0.33
17 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 -0.79 0.3 -0.32
18 AT5G04810 pentatricopeptide (PPR) repeat-containing protein -0.79 0.32 -0.32
19 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 -0.78 0.3 -0.32
20 AT4G19710 aspartate kinase-homoserine dehydrogenase ii ASPARTATE KINASE-HOMOSERINE
DEHYDROGENASE, aspartate
kinase-homoserine dehydrogenase ii		 -0.78 0.33 -0.31
21 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 -0.78 0.31 -0.33
22 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 -0.78 0.33 -0.32
23 AT3G21300 RNA methyltransferase family protein -0.78 0.31 -0.3
24 AT2G27040 Argonaute family protein ARGONAUTE 4, OVEREXPRESSOR OF
CATIONIC PEROXIDASE 11		 -0.78 0.33 -0.32
25 AT5G11970 Protein of unknown function (DUF3511) 0.78 0.31 -0.32
26 AT1G29070 Ribosomal protein L34 -0.78 0.33 -0.31
27 AT1G12140 flavin-monooxygenase glucosinolate S-oxygenase 5 flavin-monooxygenase glucosinolate
S-oxygenase 5		 0.78 0.32 -0.32
28 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 -0.77 0.32 -0.32
29 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 -0.77 0.31 -0.34
30 AT3G17940 Galactose mutarotase-like superfamily protein 0.77 0.32 -0.31
31 AT5G57590 adenosylmethionine-8-amino-7-oxononanoate transaminases biotin auxotroph 1 -0.77 0.29 -0.32
32 AT2G29890 villin-like 1 ATVLN1, villin 1 -0.77 0.31 -0.34
33 AT2G40960 Single-stranded nucleic acid binding R3H protein -0.77 0.33 -0.32
34 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.77 0.3 -0.32
35 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 -0.77 0.32 -0.33
36 AT2G38040 acetyl Co-enzyme a carboxylase carboxyltransferase alpha
subunit		 acetyl Co-enzyme a carboxylase
carboxyltransferase alpha subunit		 -0.77 0.29 -0.31
37 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 -0.76 0.31 -0.31
38 AT4G30270 xyloglucan endotransglucosylase/hydrolase 24 MERISTEM 5, meristem-5, SENESCENCE
4, xyloglucan
endotransglucosylase/hydrolase 24		 0.76 0.31 -0.28
39 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 -0.76 0.31 -0.33
40 AT1G42550 plastid movement impaired1 PLASTID MOVEMENT IMPAIRED1 -0.76 0.32 -0.33
41 AT1G16670 Protein kinase superfamily protein 0.76 0.32 -0.32
42 AT1G11280 S-locus lectin protein kinase family protein -0.76 0.3 -0.32
43 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 -0.76 0.32 -0.34
44 AT3G43610 Spc97 / Spc98 family of spindle pole body (SBP) component -0.76 0.31 -0.32
45 AT1G28280 VQ motif-containing protein 0.76 0.3 -0.33
46 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 -0.76 0.32 -0.32
47 AT5G43280 delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
delta(3,5),delta(2,4)-dienoyl-CoA
isomerase 1,
DELTA(3,5),DELTA(2,4)-DIENOYL-COA
ISOMERASE 1		 0.76 0.32 -0.28
48 AT1G26690 emp24/gp25L/p24 family/GOLD family protein 0.76 0.32 -0.34
49 AT1G69200 fructokinase-like 2 fructokinase-like 2 -0.76 0.29 -0.31
50 AT5G64380 Inositol monophosphatase family protein -0.76 0.3 -0.32
51 AT2G39560 Putative membrane lipoprotein -0.75 0.3 -0.34
52 AT2G27450 nitrilase-like protein 1 ATNLP1, CPA, nitrilase-like
protein 1		 0.75 0.31 -0.32
53 AT2G04270 RNAse E/G-like RNAse E/G-like -0.75 0.31 -0.31
54 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 -0.75 0.31 -0.3
55 AT5G42480 Chaperone DnaJ-domain superfamily protein ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6		 -0.75 0.31 -0.32
56 AT1G20870 HSP20-like chaperones superfamily protein -0.75 0.31 -0.33
57 AT5G07220 BCL-2-associated athanogene 3 BCL-2-associated athanogene 3,
BCL-2-associated athanogene 3		 0.75 0.31 -0.32
58 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 -0.75 0.31 -0.32
59 AT3G06980 DEA(D/H)-box RNA helicase family protein -0.75 0.33 -0.28
60 AT3G24560 Adenine nucleotide alpha hydrolases-like superfamily
protein		 RASPBERRY 3 -0.74 0.31 -0.31
61 AT3G61610 Galactose mutarotase-like superfamily protein -0.74 0.32 -0.31
62 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 -0.74 0.31 -0.32
63 AT4G17740 Peptidase S41 family protein -0.74 0.34 -0.29
64 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 -0.74 0.31 -0.32
65 AT4G02680 ETO1-like 1 ETO1-like 1 -0.74 0.31 -0.31
66 AT1G11600 cytochrome P450, family 77, subfamily B, polypeptide 1 cytochrome P450, family 77,
subfamily B, polypeptide 1		 -0.74 0.29 -0.34
67 AT4G02060 Minichromosome maintenance (MCM2/3/5) family protein MCM7, PROLIFERA -0.74 0.3 -0.32
68 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 -0.74 0.29 -0.32
69 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.74 0.3 -0.29
70 AT5G27440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: shoot apex, shoot, flower, seed;
EXPRESSED DURING: petal differentiation and expansion
stage, E expanded cotyledon stage; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.74 0.3 -0.34
71 AT2G32830 phosphate transporter 1;5 phosphate transporter 1;5,
PHOSPHATE TRANSPORTER 5		 0.74 0.33 -0.33
72 AT5G42070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 -0.74 0.3 -0.31
73 AT5G63920 topoisomerase 3alpha AtTOP3alpha, topoisomerase 3alpha -0.74 0.31 -0.33
74 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.74 0.33 -0.31
75 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 -0.74 0.31 -0.3
76 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 -0.74 0.32 -0.32
77 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 -0.73 0.31 -0.31
78 AT5G48360 Actin-binding FH2 (formin homology 2) family protein -0.73 0.31 -0.32
79 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 -0.73 0.3 -0.32
80 AT5G47610 RING/U-box superfamily protein -0.73 0.31 -0.31
81 AT4G15110 cytochrome P450, family 97, subfamily B, polypeptide 3 cytochrome P450, family 97,
subfamily B, polypeptide 3		 -0.73 0.31 -0.33
82 AT5G40740 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.31 -0.32
83 AT3G58070 C2H2 and C2HC zinc fingers superfamily protein GLABROUS INFLORESCENCE STEMS -0.73 0.32 -0.31
84 AT3G01500 carbonic anhydrase 1 BETA CARBONIC ANHYDRASE 1,
ARABIDOPSIS THALIANA SALICYLIC
ACID-BINDING PROTEIN 3, carbonic
anhydrase 1, SALICYLIC
ACID-BINDING PROTEIN 3		 -0.73 0.3 -0.33
85 AT1G79080 Pentatricopeptide repeat (PPR) superfamily protein -0.73 0.32 -0.3
86 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A -0.73 0.29 -0.3
87 AT3G15550 unknown protein; Has 25732 Blast hits to 16979 proteins in
961 species: Archae - 144; Bacteria - 1801; Metazoa -
12681; Fungi - 1868; Plants - 912; Viruses - 94; Other
Eukaryotes - 8232 (source: NCBI BLink).		 -0.73 0.3 -0.29
88 AT1G50450 Saccharopine dehydrogenase -0.73 0.31 -0.33
89 AT1G67690 Zincin-like metalloproteases family protein -0.73 0.31 -0.32
90 AT2G48120 pale cress protein (PAC) PALE CRESS -0.73 0.33 -0.31
91 AT3G62580 Late embryogenesis abundant protein (LEA) family protein 0.72 0.31 -0.33
92 AT1G50240 Protein kinase family protein with ARM repeat domain FUSED -0.72 0.32 -0.33
93 AT2G35800 mitochondrial substrate carrier family protein S-adenosyl methionine
transporter-like		 -0.72 0.3 -0.32
94 ATCG00640 ribosomal protein L33 ribosomal protein L33 -0.72 0.3 -0.3
95 AT4G01800 Albino or Glassy Yellow 1 Albino or Glassy Yellow 1,
Arabidopsis thaliana chloroplast
SecA, SECA1		 -0.72 0.34 -0.33
96 AT2G33560 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) BUB1-related (BUB1: budding
uninhibited by benzymidazol 1)		 -0.72 0.32 -0.31
97 AT5G14740 carbonic anhydrase 2 BETA CARBONIC ANHYDRASE 2,
CARBONIC ANHYDRASE 18, carbonic
anhydrase 2		 -0.72 0.33 -0.31
98 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12		 -0.72 0.32 -0.31
99 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 -0.72 0.33 -0.33
100 AT4G04350 tRNA synthetase class I (I, L, M and V) family protein EMBRYO DEFECTIVE 2369 -0.72 0.31 -0.32
101 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 -0.72 0.32 -0.3
102 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein -0.72 0.34 -0.32
103 AT1G03950 vacuolar protein sorting-associated protein 2.3 vacuolar protein
sorting-associated protein 2.3		 0.72 0.31 -0.33
104 AT5G08650 Small GTP-binding protein -0.72 0.32 -0.32
105 AT2G18710 SECY homolog 1 SECY homolog 1 -0.72 0.32 -0.31
106 AT1G24290 AAA-type ATPase family protein -0.72 0.31 -0.33
107 AT5G46580 pentatricopeptide (PPR) repeat-containing protein -0.72 0.32 -0.3
108 AT4G36390 Methylthiotransferase -0.71 0.3 -0.29
109 AT5G13000 glucan synthase-like 12 glucan synthase-like 12, callose
synthase 3, gsl12, glucan
synthase-like 12		 -0.71 0.33 -0.3
110 AT4G14970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 6 growth stages; Has 257 Blast hits to 164 proteins
in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189;
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).		 -0.71 0.31 -0.3
111 AT3G29375 XH domain-containing protein -0.71 0.32 -0.34
112 AT2G24200 Cytosol aminopeptidase family protein 0.71 0.31 -0.32
113 AT1G12860 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 INDUCER OF CBF EXPRESSION 2,
SCREAM 2		 -0.71 0.32 -0.29
114 AT3G56650 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 -0.71 0.32 -0.31
115 AT1G80030 Molecular chaperone Hsp40/DnaJ family protein -0.71 0.32 -0.32
116 AT2G13440 glucose-inhibited division family A protein -0.71 0.35 -0.31
117 AT2G35310 Transcriptional factor B3 family protein -0.71 0.3 -0.33
118 AT3G44890 ribosomal protein L9 ribosomal protein L9 -0.71 0.32 -0.3
119 AT3G13430 RING/U-box superfamily protein 0.7 0.34 -0.31
120 AT3G28850 Glutaredoxin family protein 0.7 0.32 -0.3
121 AT2G43060 ILI1 binding bHLH 1 ILI1 binding bHLH 1 0.69 0.31 -0.31
122 AT5G24210 alpha/beta-Hydrolases superfamily protein 0.69 0.34 -0.32
123 AT3G04060 NAC domain containing protein 46 NAC domain containing protein 46,
NAC domain containing protein 46		 0.69 0.34 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
124 C0253 Threonic acid-1,4-lactone D,L-Threonic acid-1,4-lactone - - -0.73 0.45 -0.44
125 C0135 Kaempferol-hexosyl-dirhamnoside - - - 0.7 0.42 -0.45