AT3G30350 : root meristem growth factor 4
Query Information
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AGICode AT3G30350
Description Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G30350 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 4 1 0.32 -0.32
2 AT5G42630 Homeodomain-like superfamily protein ABERRANT TESTA SHAPE, KANADI 4 0.67 0.32 -0.32
3 AT4G26950 Protein of unknown function, DUF584 -0.67 0.32 -0.32
4 AT2G47140 NAD(P)-binding Rossmann-fold superfamily protein AtSDR5, short-chain dehydrogenase
reductase 5		 0.67 0.35 -0.35
5 AT1G74500 activation-tagged BRI1(brassinosteroid-insensitive
1)-suppressor 1		 activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, TARGET OF
MONOPTEROS 7		 0.66 0.34 -0.32
6 AT1G75520 SHI-related sequence 5 SHI-related sequence 5 0.65 0.34 -0.3
7 AT1G76880 Duplicated homeodomain-like superfamily protein -0.65 0.32 -0.31
8 AT1G79580 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 33, SOMBRERO		 0.64 0.31 -0.31
9 AT1G19190 alpha/beta-Hydrolases superfamily protein 0.64 0.32 -0.3
10 AT2G45830 downstream target of AGL15 2 downstream target of AGL15 2 0.64 0.31 -0.31
11 AT2G23030 SNF1-related protein kinase 2.9 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-9, SNF1-related
protein kinase 2.9		 0.64 0.33 -0.3
12 AT4G08590 ORTHRUS-like ORTH-LIKE 1, ORTHRUS-LIKE 1,
ORTHRUS-like, VARIANT IN
METHYLATION 6		 0.64 0.32 -0.31
13 AT2G15380 transposable element gene -0.63 0.31 -0.31
14 AT4G17350 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 0.63 0.33 -0.31
15 AT5G62260 AT hook motif DNA-binding family protein 0.63 0.34 -0.32
16 AT5G47440 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 0.63 0.34 -0.33
17 AT1G19620 unknown protein; Has 44 Blast hits to 24 proteins in 12
species: Archae - 0; Bacteria - 8; Metazoa - 22; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 8 (source: NCBI
BLink).		 -0.63 0.29 -0.32
18 AT5G20860 Plant invertase/pectin methylesterase inhibitor superfamily 0.63 0.32 -0.3
19 AT5G10720 histidine kinase 5 histidine kinase 5, CYTOKININ
INDEPENDENT 2, histidine kinase 5		 0.62 0.31 -0.33
20 AT1G26870 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 9, FEZ		 0.62 0.31 -0.33
21 AT2G01430 homeobox-leucine zipper protein 17 ARABIDOPSIS THALIANA
HOMEOBOX-LEUCINE ZIPPER PROTEIN
17, homeobox-leucine zipper
protein 17, homeobox-leucine
zipper protein 17		 0.62 0.31 -0.3
22 AT4G17220 microtubule-associated proteins 70-5 microtubule-associated proteins
70-5, microtubule-associated
proteins 70-5		 0.61 0.3 -0.3
23 AT3G20840 Integrase-type DNA-binding superfamily protein PLETHORA 1 0.61 0.33 -0.3
24 AT1G74660 mini zinc finger 1 mini zinc finger 1 0.6 0.29 -0.32
25 AT2G46090 Diacylglycerol kinase family protein -0.6 0.33 -0.32
26 AT1G35250 Thioesterase superfamily protein 0.6 0.32 -0.29
27 AT1G26820 ribonuclease 3 ribonuclease 3 0.6 0.3 -0.33
28 AT2G16780 Transducin family protein / WD-40 repeat family protein MSI02, MULTICOPY SUPPRESSOR OF
IRA1 2, NFC02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 2		 0.6 0.29 -0.32
29 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A -0.6 0.33 -0.29
30 AT4G24660 homeobox protein 22 HOMEOBOX PROTEIN 22, homeobox
protein 22, MATERNAL EFFECT EMBRYO
ARREST 68, ZINC FINGER HOMEODOMAIN
2		 -0.58 0.31 -0.31
31 AT5G41410 POX (plant homeobox) family protein BELL 1 -0.58 0.32 -0.3
32 AT1G08490 chloroplastic NIFS-like cysteine desulfurase ATCPNIFS, ATNFS2, ATSUFS,
chloroplastic NIFS-like cysteine
desulfurase, SUFS		 -0.58 0.3 -0.32
33 AT4G00110 UDP-D-glucuronate 4-epimerase 3 UDP-D-glucuronate 4-epimerase 3 0.58 0.31 -0.3
34 AT1G78100 F-box family protein auxin up-regulated f-box protein 1 0.58 0.32 -0.3
35 AT4G36710 GRAS family transcription factor Arabidopsis thaliana HAIRY
MERISTEM 4, HAM4		 -0.58 0.33 -0.32
36 AT4G11880 AGAMOUS-like 14 AGAMOUS-like 14 0.58 0.33 -0.32
37 AT4G26220 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.58 0.31 -0.31
38 AT2G14960 Auxin-responsive GH3 family protein GH3.1 0.57 0.33 -0.3
39 AT2G43040 tetratricopeptide repeat (TPR)-containing protein no pollen germination 1 0.57 0.31 -0.29
40 AT5G51850 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G62170.1); Has 384 Blast hits
to 375 proteins in 79 species: Archae - 0; Bacteria - 14;
Metazoa - 135; Fungi - 31; Plants - 92; Viruses - 0; Other
Eukaryotes - 112 (source: NCBI BLink).		 -0.57 0.31 -0.3
41 AT2G26290 root-specific kinase 1 root-specific kinase 1 0.57 0.3 -0.31
42 AT4G34970 actin depolymerizing factor 9 actin depolymerizing factor 9 0.57 0.32 -0.31
43 AT5G62180 carboxyesterase 20 carboxyesterase 20,
carboxyesterase 20		 0.57 0.3 -0.3
44 AT5G50860 Protein kinase superfamily protein -0.56 0.32 -0.32
45 AT3G62380 CONTAINS InterPro DOMAIN/s: F-box associated interaction
domain (InterPro:IPR017451); BEST Arabidopsis thaliana
protein match is: F-box family protein (TAIR:AT1G71320.1);
Has 422 Blast hits to 419 proteins in 26 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.56 0.31 -0.32
46 ATCG00120 ATP synthase subunit alpha ATP synthase subunit alpha -0.56 0.29 -0.32
47 AT3G27840 ribosomal protein L12-B ribosomal protein L12-B -0.56 0.33 -0.32
48 AT1G09720 Kinase interacting (KIP1-like) family protein -0.56 0.31 -0.31
49 AT2G37120 S1FA-like DNA-binding protein 0.55 0.33 -0.3
50 AT3G03090 vacuolar glucose transporter 1 vacuolar glucose transporter 1,
vacuolar glucose transporter 1		 -0.55 0.31 -0.29
51 ATCG01080 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 NDHG -0.55 0.33 -0.31
52 AT5G20950 Glycosyl hydrolase family protein 0.55 0.32 -0.32
53 AT2G05640 transposable element gene -0.55 0.31 -0.31
54 AT4G36870 BEL1-like homeodomain 2 BEL1-like homeodomain 2, SAWTOOTH
1		 -0.55 0.32 -0.32
55 ATCG00730 photosynthetic electron transfer D photosynthetic electron transfer D -0.54 0.34 -0.31
56 AT3G06870 proline-rich family protein -0.54 0.3 -0.32
57 AT3G47400 Plant invertase/pectin methylesterase inhibitor superfamily 0.54 0.32 -0.32
58 AT5G57940 cyclic nucleotide gated channel 5 cyclic nucleotide gated channel 5,
cyclic nucleotide gated channel 5		 -0.54 0.3 -0.3
59 AT5G18560 Integrase-type DNA-binding superfamily protein PUCHI 0.54 0.3 -0.33
60 AT2G44680 casein kinase II beta subunit 4 casein kinase II beta subunit 4 -0.53 0.31 -0.32
61 AT5G35510 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.53 0.32 -0.32
62 AT1G77270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G07730.1); Has 428 Blast hits
to 388 proteins in 92 species: Archae - 0; Bacteria - 31;
Metazoa - 189; Fungi - 10; Plants - 97; Viruses - 0; Other
Eukaryotes - 101 (source: NCBI BLink).		 -0.53 0.32 -0.32
63 AT3G08670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast
hits to 29827 proteins in 1356 species: Archae - 46;
Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants -
2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI
BLink).		 -0.53 0.33 -0.31
64 AT5G67350 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.53 0.32 -0.28
65 AT3G20710 F-box family protein 0.53 0.31 -0.34
66 AT4G26590 oligopeptide transporter 5 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 5, oligopeptide
transporter 5		 -0.52 0.28 -0.33
67 AT1G50840 polymerase gamma 2 polymerase gamma 2, polymerase I A -0.52 0.33 -0.28
68 AT5G62070 IQ-domain 23 IQ-domain 23 -0.52 0.31 -0.32
69 ATCG01020 ribosomal protein L32 ribosomal protein L32 -0.51 0.3 -0.32
70 AT1G52990 thioredoxin family protein -0.51 0.3 -0.31
71 AT4G07425 transposable element gene -0.51 0.31 -0.32
72 AT1G42190 GAG/POL/ENV polyprotein -0.5 0.31 -0.34
73 AT5G28940 transposable element gene -0.5 0.3 -0.32
74 AT4G24280 chloroplast heat shock protein 70-1 chloroplast heat shock protein
70-1		 -0.5 0.31 -0.31
75 AT1G79350 RING/FYVE/PHD zinc finger superfamily protein embryo defective 1135 -0.5 0.31 -0.32
76 AT5G12990 CLAVATA3/ESR-RELATED 40 CLAVATA3/ESR-RELATED 40 -0.5 0.32 -0.33
77 AT5G45530 Protein of unknown function (DUF594) -0.49 0.34 -0.3
78 AT1G32880 ARM repeat superfamily protein -0.49 0.32 -0.3
79 AT3G06670 binding -0.49 0.32 -0.34
80 AT5G07260 START (StAR-related lipid-transfer) lipid-binding domain -0.49 0.3 -0.3
81 AT5G06250 AP2/B3-like transcriptional factor family protein -0.49 0.3 -0.31
82 AT5G36840 transposable element gene -0.48 0.32 -0.32
83 AT1G69820 gamma-glutamyl transpeptidase 3 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.48 0.32 -0.31
84 AT2G37010 non-intrinsic ABC protein 12 non-intrinsic ABC protein 12,
non-intrinsic ABC protein 12		 -0.48 0.31 -0.33
85 AT4G19095 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.48 0.32 -0.33
86 AT5G66950 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.48 0.31 -0.32
87 AT3G25960 Pyruvate kinase family protein -0.48 0.32 -0.34
88 AT5G20560 Glycosyl hydrolase superfamily protein -0.48 0.33 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
89 C0006 β-Homothreonine L-β-Homothreonine - - 0.69 0.47 -0.46