AT3G25940 : -
Query Information
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AGICode AT3G25940
Description TFIIB zinc-binding protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G25940 TFIIB zinc-binding protein 1 0.31 -0.31
2 AT2G32220 Ribosomal L27e protein family 0.9 0.31 -0.28
3 AT2G44860 Ribosomal protein L24e family protein 0.88 0.33 -0.31
4 AT2G19540 Transducin family protein / WD-40 repeat family protein 0.88 0.31 -0.31
5 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.87 0.31 -0.3
6 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.86 0.3 -0.31
7 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.86 0.33 -0.33
8 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.86 0.31 -0.31
9 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 0.85 0.32 -0.3
10 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.84 0.3 -0.33
11 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.84 0.31 -0.33
12 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.84 0.3 -0.33
13 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.84 0.31 -0.33
14 AT1G54770 Fcf2 pre-rRNA processing protein 0.83 0.31 -0.32
15 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.83 0.33 -0.31
16 AT4G01560 Ribosomal RNA processing Brix domain protein maternal effect embryo arrest 49 0.83 0.31 -0.31
17 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.83 0.31 -0.3
18 AT4G15770 RNA binding 0.83 0.3 -0.32
19 AT3G07230 wound-responsive protein-related 0.82 0.31 -0.31
20 AT2G45710 Zinc-binding ribosomal protein family protein 0.82 0.29 -0.31
21 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 0.82 0.34 -0.29
22 AT4G31985 Ribosomal protein L39 family protein 0.82 0.33 -0.29
23 AT3G49990 unknown protein; Has 1524 Blast hits to 1298 proteins in
225 species: Archae - 9; Bacteria - 84; Metazoa - 474;
Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes -
658 (source: NCBI BLink).		 0.82 0.31 -0.32
24 AT4G18040 eukaryotic translation initiation factor 4E ARABIDOPSIS THALIANA EUKARYOTIC
TRANSLATION INITATION FACTOR 4E1,
CUCUMOVIRUS MULTIPLICATION 1,
eukaryotic translation initiation
factor 4E, eukaryotic translation
Initiation Factor 4E1		 0.82 0.31 -0.29
25 AT2G44510 CDK inhibitor P21 binding protein 0.82 0.32 -0.34
26 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.81 0.29 -0.31
27 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).		 0.81 0.33 -0.33
28 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.81 0.32 -0.32
29 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.81 0.3 -0.33
30 AT1G51510 RNA-binding (RRM/RBD/RNP motifs) family protein Y14 0.81 0.32 -0.31
31 AT1G52930 Ribosomal RNA processing Brix domain protein 0.81 0.34 -0.3
32 AT4G28450 nucleotide binding;protein binding 0.81 0.3 -0.31
33 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.81 0.32 -0.3
34 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.81 0.31 -0.31
35 AT1G22270 Trm112p-like protein 0.81 0.29 -0.31
36 AT5G24840 tRNA (guanine-N-7) methyltransferase 0.8 0.31 -0.32
37 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.8 0.32 -0.3
38 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.8 0.32 -0.31
39 AT5G59180 DNA-directed RNA polymerase II NRPB7 0.8 0.32 -0.33
40 AT1G43860 sequence-specific DNA binding transcription factors 0.8 0.31 -0.32
41 AT2G40430 CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687),
Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has
709 Blast hits to 643 proteins in 201 species: Archae - 0;
Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45;
Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).		 0.8 0.33 -0.33
42 AT1G42440 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948),
Protein of unknown function DUF663 (InterPro:IPR007034);
BEST Arabidopsis thaliana protein match is: P-loop
containing nucleoside triphosphate hydrolases superfamily
protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088
proteins in 291 species: Archae - 2; Bacteria - 131;
Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49;
Other Eukaryotes - 905 (source: NCBI BLink).		 0.8 0.32 -0.32
43 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.79 0.33 -0.33
44 AT1G32440 plastidial pyruvate kinase 3 plastidial pyruvate kinase 3 0.79 0.3 -0.31
45 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.79 0.33 -0.31
46 AT4G24440 transcription initiation factor IIA gamma chain /
TFIIA-gamma (TFIIA-S)		 0.79 0.32 -0.3
47 AT1G48570 zinc finger (Ran-binding) family protein 0.79 0.35 -0.31
48 AT4G26430 COP9 signalosome subunit 6B COP9 signalosome subunit 6B 0.79 0.31 -0.31
49 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.79 0.31 -0.3
50 AT5G06360 Ribosomal protein S8e family protein 0.79 0.31 -0.32
51 AT5G41190 CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)
Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA
nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.79 0.33 -0.3
52 AT1G75670 DNA-directed RNA polymerases 0.79 0.32 -0.33
53 AT3G18165 modifier of snc1,4 Modifier of snc1,4 0.79 0.33 -0.31
54 AT2G04520 Nucleic acid-binding, OB-fold-like protein 0.79 0.31 -0.31
55 AT3G54400 Eukaryotic aspartyl protease family protein 0.79 0.33 -0.31
56 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 0.78 0.31 -0.31
57 AT1G10840 translation initiation factor 3 subunit H1 translation initiation factor 3
subunit H1		 0.78 0.29 -0.31
58 AT5G02470 Transcription factor DP DPA 0.78 0.34 -0.31
59 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B		 -0.78 0.3 -0.33
60 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.78 0.31 -0.31
61 AT4G39280 phenylalanyl-tRNA synthetase, putative /
phenylalanine--tRNA ligase, putative		 0.78 0.33 -0.32
62 AT3G05420 acyl-CoA binding protein 4 acyl-CoA binding protein 4 0.78 0.32 -0.31
63 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.78 0.29 -0.35
64 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.78 0.31 -0.31
65 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.78 0.32 -0.29
66 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 embryo defective 1860, TIM50 0.78 0.33 -0.35
67 AT5G02450 Ribosomal protein L36e family protein 0.78 0.32 -0.3
68 AT2G02880 mucin-related 0.78 0.3 -0.29
69 AT2G01860 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 975 0.78 0.32 -0.31
70 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.78 0.31 -0.29
71 AT3G06790 plastid developmental protein DAG, putative 0.77 0.32 -0.32
72 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 0.77 0.32 -0.31
73 AT4G13940 S-adenosyl-L-homocysteine hydrolase S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE
1, EMBRYO DEFECTIVE 1395,
HOMOLOGY-DEPENDENT GENE SILENCING
1, MATERNAL EFFECT EMBRYO ARREST
58, S-ADENOSYL-L-HOMOCYSTEIN
HYDROLASE 1		 0.77 0.3 -0.33
74 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.77 0.29 -0.32
75 AT2G24050 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G2		 0.77 0.32 -0.33
76 AT2G25970 KH domain-containing protein 0.77 0.32 -0.31
77 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.77 0.32 -0.32
78 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 0.77 0.32 -0.32
79 AT3G62940 Cysteine proteinases superfamily protein 0.77 0.34 -0.31
80 AT5G22840 Protein kinase superfamily protein 0.77 0.33 -0.31
81 AT1G15740 Leucine-rich repeat family protein -0.76 0.33 -0.31
82 AT3G52060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.72 0.32 -0.31
83 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.72 0.31 -0.31
84 AT1G73920 alpha/beta-Hydrolases superfamily protein -0.72 0.3 -0.3
85 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.71 0.32 -0.33
86 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.69 0.34 -0.31
87 AT1G80920 Chaperone DnaJ-domain superfamily protein AtJ8, translocon at the outer
envelope membrane of chloroplasts
12, J8, translocon at the outer
envelope membrane of chloroplasts
12		 -0.69 0.33 -0.31
88 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 -0.68 0.31 -0.32
89 AT1G80440 Galactose oxidase/kelch repeat superfamily protein -0.68 0.3 -0.3
90 AT1G48430 Dihydroxyacetone kinase -0.66 0.29 -0.32
91 AT3G23640 heteroglycan glucosidase 1 heteroglycan glucosidase 1 -0.64 0.32 -0.32
92 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 -0.63 0.31 -0.3
93 AT5G51290 Diacylglycerol kinase family protein -0.63 0.3 -0.33
94 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 -0.62 0.31 -0.31
95 AT5G26190 Cysteine/Histidine-rich C1 domain family protein -0.62 0.33 -0.3
96 AT5G13700 polyamine oxidase 1 APAO, polyamine oxidase 1,
polyamine oxidase 1		 -0.6 0.32 -0.35
97 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding -0.6 0.29 -0.29
98 AT1G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 62
Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
99 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) -0.69 0.31 -0.29 C0142
100 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		-0.64 0.28 -0.31 C0022
101 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.64 0.3 -0.31 C0097
102 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway -0.6 0.31 -0.32 C0218