AT3G08020 : -
Query Information
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AGICode AT3G08020
Description PHD finger family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G08020 PHD finger family protein 1 0.31 -0.31
2 AT2G32380 Transmembrane protein 97, predicted -0.82 0.32 -0.34
3 AT3G53890 Ribosomal protein S21e -0.77 0.3 -0.31
4 AT3G22380 time for coffee TIME FOR COFFEE 0.77 0.33 -0.32
5 AT5G35180 Protein of unknown function (DUF1336) 0.75 0.32 -0.32
6 AT1G63220 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.74 0.33 -0.31
7 AT1G64190 6-phosphogluconate dehydrogenase family protein -0.74 0.32 -0.32
8 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 -0.73 0.33 -0.29
9 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 -0.73 0.31 -0.33
10 AT4G22720 Actin-like ATPase superfamily protein -0.73 0.31 -0.3
11 AT3G01320 SIN3-like 1 SIN3-like 1 0.72 0.31 -0.32
12 AT5G23900 Ribosomal protein L13e family protein -0.72 0.31 -0.32
13 AT1G66620 Protein with RING/U-box and TRAF-like domains -0.72 0.31 -0.33
14 AT5G66920 SKU5 similar 17 SKU5 similar 17 -0.72 0.32 -0.33
15 AT1G45160 Protein kinase superfamily protein 0.72 0.31 -0.32
16 AT5G26570 catalytics;carbohydrate kinases;phosphoglucan, water
dikinases		 ATGWD3, OK1, PHOSPHOGLUCAN WATER
DIKINASE		 0.72 0.32 -0.33
17 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 -0.71 0.29 -0.33
18 AT1G14980 chaperonin 10 chaperonin 10 -0.71 0.29 -0.32
19 AT1G55110 indeterminate(ID)-domain 7 indeterminate(ID)-domain 7,
indeterminate(ID)-domain 7		 0.71 0.32 -0.31
20 AT1G68570 Major facilitator superfamily protein 0.71 0.33 -0.31
21 AT3G16940 calmodulin binding;transcription regulators 0.7 0.34 -0.32
22 AT3G55170 Ribosomal L29 family protein -0.7 0.33 -0.32
23 AT1G31480 shoot gravitropism 2 (SGR2) SHOOT GRAVITROPISM 2 0.7 0.33 -0.31
24 AT5G57290 60S acidic ribosomal protein family -0.7 0.32 -0.31
25 AT3G47370 Ribosomal protein S10p/S20e family protein -0.7 0.31 -0.34
26 AT4G29390 Ribosomal protein S30 family protein -0.7 0.32 -0.31
27 AT4G35850 Pentatricopeptide repeat (PPR) superfamily protein -0.7 0.32 -0.31
28 AT2G18400 ribosomal protein L6 family protein -0.7 0.32 -0.31
29 AT5G47700 60S acidic ribosomal protein family -0.7 0.32 -0.32
30 AT3G42800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 853 Blast hits
to 340 proteins in 98 species: Archae - 0; Bacteria - 94;
Metazoa - 145; Fungi - 62; Plants - 95; Viruses - 0; Other
Eukaryotes - 457 (source: NCBI BLink).		 -0.7 0.32 -0.32
31 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 -0.7 0.32 -0.31
32 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 -0.7 0.31 -0.3
33 AT1G04040 HAD superfamily, subfamily IIIB acid phosphatase -0.7 0.3 -0.31
34 AT2G35605 SWIB/MDM2 domain superfamily protein -0.7 0.31 -0.32
35 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein		 -0.7 0.33 -0.32
36 AT5G07110 prenylated RAB acceptor 1.B6 prenylated RAB acceptor 1.B6 -0.69 0.34 -0.31
37 AT3G55730 myb domain protein 109 myb domain protein 109, myb domain
protein 109		 -0.69 0.32 -0.3
38 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.69 0.31 -0.33
39 AT3G05150 Major facilitator superfamily protein -0.69 0.33 -0.33
40 AT5G03300 adenosine kinase 2 adenosine kinase 2 -0.69 0.31 -0.34
41 AT5G03345 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Magnesium transporter (InterPro:IPR018937); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.69 0.31 -0.31
42 AT4G32160 Phox (PX) domain-containing protein 0.69 0.32 -0.3
43 AT1G26740 Ribosomal L32p protein family -0.69 0.3 -0.31
44 AT2G03140 alpha/beta-Hydrolases superfamily protein 0.68 0.32 -0.3
45 AT3G04920 Ribosomal protein S24e family protein -0.68 0.32 -0.29
46 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.68 0.32 -0.33
47 AT4G36420 Ribosomal protein L12 family protein -0.68 0.33 -0.3
48 AT5G27770 Ribosomal L22e protein family -0.68 0.29 -0.31
49 AT2G33845 Nucleic acid-binding, OB-fold-like protein -0.68 0.32 -0.31
50 AT4G32840 phosphofructokinase 6 phosphofructokinase 6 -0.68 0.33 -0.31
51 AT1G69530 expansin A1 AT-EXP1, ATEXP1, expansin A1,
ATHEXP ALPHA 1.2, EXPANSIN 1,
expansin A1		 -0.68 0.32 -0.29
52 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family
protein		 -0.68 0.31 -0.31
53 AT5G05890 UDP-Glycosyltransferase superfamily protein -0.68 0.34 -0.33
54 AT1G43170 ribosomal protein 1 ribosomal protein 1, embryo
defective 2207, ribosomal protein
1, RPL3A		 -0.68 0.29 -0.3
55 AT1G80560 isopropylmalate dehydrogenase 2 ARABIDOPSIS ISOPROPYLMALATE
DEHYDROGENASE 2, isopropylmalate
dehydrogenase 2		 -0.67 0.31 -0.32
56 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 0.67 0.31 -0.3
57 AT2G44120 Ribosomal protein L30/L7 family protein -0.67 0.32 -0.34
58 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 0.67 0.29 -0.31
59 AT3G62960 Thioredoxin superfamily protein -0.67 0.33 -0.31
60 AT1G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits
to 40 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.33 -0.32
61 AT4G26550 Got1/Sft2-like vescicle transport protein family -0.67 0.3 -0.31
62 AT3G01310 Phosphoglycerate mutase-like family protein 0.67 0.32 -0.31
63 AT4G27270 Quinone reductase family protein -0.67 0.32 -0.32
64 AT1G74030 enolase 1 enolase 1 -0.67 0.35 -0.32
65 AT4G03200 catalytics 0.67 0.3 -0.34
66 AT3G51010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.67 0.32 -0.31
67 AT5G23300 pyrimidine d pyrimidine d -0.67 0.3 -0.3
68 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.66 0.32 -0.33
69 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 -0.66 0.31 -0.3
70 AT4G29830 Transducin/WD40 repeat-like superfamily protein vernalization independence 3 -0.66 0.3 -0.3
71 AT3G43810 calmodulin 7 calmodulin 7 -0.66 0.32 -0.31
72 AT1G72650 TRF-like 6 TRF-like 6 0.66 0.3 -0.31
73 AT5G23860 tubulin beta 8 tubulin beta 8 -0.66 0.3 -0.31
74 AT2G21195 unknown protein; Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.31 -0.32
75 AT5G25170 PPPDE putative thiol peptidase family protein -0.66 0.32 -0.34
76 AT1G11670 MATE efflux family protein -0.66 0.31 -0.32
77 AT2G39460 ribosomal protein L23AA ARABIDOPSIS THALIANA RIBOSOMAL
PROTEIN L23A, RIBOSOMAL PROTEIN
L23A, RIBOSOMAL PROTEIN L23A1,
ribosomal protein L23AA		 -0.66 0.31 -0.33
78 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.65 0.31 -0.33
79 AT1G77800 PHD finger family protein 0.65 0.32 -0.35
80 AT3G09850 D111/G-patch domain-containing protein 0.65 0.34 -0.33
81 AT2G46180 golgin candidate 4 golgin candidate 4 0.65 0.3 -0.32
82 AT5G07960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0139
(InterPro:IPR005351); Has 193 Blast hits to 193 proteins in
75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi
- 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 -0.65 0.3 -0.32
83 AT2G25850 poly(A) polymerase 2 poly(A) polymerase 2 0.65 0.31 -0.29
84 AT4G16265 RNA polymerases M/15 Kd subunit NRPB9B, NRPD9B, NRPE9B -0.65 0.31 -0.32
85 AT1G24706 THO2 AtTHO2, EMBRYO DEFECTIVE 2793,
THO2		 0.65 0.31 -0.32
86 AT1G61740 Sulfite exporter TauE/SafE family protein -0.65 0.31 -0.33
87 AT1G02360 Chitinase family protein -0.65 0.31 -0.32
88 AT5G49010 DNA replication protein-related EMBRYO DEFECTIVE 2812, SYNTHETIC
LETHALITY WITH DPB11-1 5		 -0.65 0.3 -0.31
89 AT5G20380 phosphate transporter 4;5 phosphate transporter 4;5 0.65 0.3 -0.31
90 AT5G57360 Galactose oxidase/kelch repeat superfamily protein ADAGIO 1, FKF1-LIKE PROTEIN 2, LOV
KELCH PROTEIN 1, ZEITLUPE		 0.65 0.32 -0.3
91 AT5G24840 tRNA (guanine-N-7) methyltransferase -0.64 0.31 -0.32
92 AT1G10570 Cysteine proteinases superfamily protein OVERLY TOLERANT TO SALT 2, UB-LIKE
PROTEASE 1C		 0.64 0.33 -0.34
93 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.3 -0.32
94 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 0.64 0.3 -0.32
95 AT1G73940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits
to 54 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.33
96 AT5G38630 cytochrome B561-1 cytochrome B561-1, cytochrome
B561-1		 -0.64 0.3 -0.31
97 AT1G48840 Plant protein of unknown function (DUF639) 0.64 0.33 -0.29
98 AT5G27990 Pre-rRNA-processing protein TSR2, conserved region -0.64 0.3 -0.31
99 AT4G38850 SAUR-like auxin-responsive protein family ARABIDOPSIS THALIANA SMALL AUXIN
UPREGULATED 15, ARABIDOPSIS
COLUMBIA SAUR GENE 1, SMALL AUXIN
UPREGULATED 15, SMALL AUXIN UP RNA
1 FROM ARABIDOPSIS THALIANA
ECOTYPE COLUMBIA		 -0.64 0.31 -0.31
100 AT3G17920 Outer arm dynein light chain 1 protein 0.64 0.3 -0.31
101 AT3G63070 Tudor/PWWP/MBT domain-containing protein 0.63 0.33 -0.31
102 AT1G61280 Phosphatidylinositol N-acetylglucosaminyltransferase,
GPI19/PIG-P subunit		 -0.63 0.3 -0.31
103 AT2G37700 Fatty acid hydroxylase superfamily -0.63 0.33 -0.33
104 AT1G27310 nuclear transport factor 2A nuclear transport factor 2A -0.63 0.32 -0.31
105 AT1G20050 C-8,7 sterol isomerase HYDRA1 -0.63 0.32 -0.32
106 AT4G00550 digalactosyl diacylglycerol deficient 2 digalactosyl diacylglycerol
deficient 2		 0.63 0.33 -0.3
107 AT1G21160 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 0.63 0.3 -0.33
108 AT2G20980 minichromosome maintenance 10 minichromosome maintenance 10 -0.63 0.31 -0.32
109 AT5G02050 Mitochondrial glycoprotein family protein -0.63 0.3 -0.31
110 AT1G62150 Mitochondrial transcription termination factor family
protein		 -0.63 0.34 -0.32
111 AT3G54230 suppressor of abi3-5 suppressor of abi3-5 0.63 0.33 -0.35
112 AT3G07870 F-box and associated interaction domains-containing protein 0.63 0.3 -0.31
113 AT2G47640 Small nuclear ribonucleoprotein family protein -0.63 0.32 -0.3
114 AT2G14900 Gibberellin-regulated family protein -0.63 0.31 -0.33
115 AT5G22450 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.62 0.34 -0.32
116 AT4G33210 F-box family protein SLOW MOTION 0.62 0.31 -0.3
117 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 0.61 0.32 -0.3
118 AT2G15810 transposable element gene 0.61 0.31 -0.28
119 AT1G80400 RING/U-box superfamily protein 0.61 0.34 -0.32
120 AT1G22870 Protein kinase family protein with ARM repeat domain 0.6 0.3 -0.33
121 AT3G26730 RING/U-box superfamily protein 0.6 0.34 -0.32
122 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 0.6 0.32 -0.32
123 AT3G62490 transposable element gene 0.6 0.3 -0.31
124 AT4G28040 nodulin MtN21 /EamA-like transporter family protein 0.6 0.32 -0.32
125 AT4G15475 F-box/RNI-like superfamily protein 0.6 0.31 -0.31
126 AT5G12370 exocyst complex component sec10 exocyst complex component sec10 0.59 0.31 -0.29
127 AT2G17730 NEP-interacting protein 2 NEP-interacting protein 2 0.59 0.33 -0.32
128 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.59 0.31 -0.33
129 AT5G02310 proteolysis 6 proteolysis 6 0.59 0.29 -0.33
130 AT2G37650 GRAS family transcription factor 0.59 0.3 -0.3
131 AT4G28260 unknown protein; Has 50 Blast hits to 42 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.3 -0.33
132 AT3G06670 binding 0.59 0.3 -0.32
133 AT1G51340 MATE efflux family protein 0.59 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
134 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		0.77 0.43 -0.46 C0123
135 C0178 MST_2446.7 - - - 0.75 0.42 -0.46
136 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		0.75 0.45 -0.43 C0225
137 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		0.6 0.33 -0.31 C0260
138 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.59 0.33 -0.33 C0137