AT3G04610 : flowering locus KH domain
Query Information
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AGICode AT3G04610
Description RNA-binding KH domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 1 0.32 -0.32
2 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 0.79 0.32 -0.32
3 AT1G18330 Homeodomain-like superfamily protein EARLY-PHYTOCHROME-RESPONSIVE1,
REVEILLE 7		 0.78 0.3 -0.3
4 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein 0.77 0.31 -0.32
5 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein 0.77 0.33 -0.32
6 AT2G43770 Transducin/WD40 repeat-like superfamily protein 0.76 0.32 -0.3
7 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 0.75 0.32 -0.32
8 AT3G61240 DEA(D/H)-box RNA helicase family protein 0.75 0.3 -0.31
9 AT3G54400 Eukaryotic aspartyl protease family protein 0.75 0.33 -0.3
10 AT1G60620 RNA polymerase I subunit 43 RNA polymerase I subunit 43, RNA
polymerase I subunit 43		 0.74 0.33 -0.31
11 AT3G26370 O-fucosyltransferase family protein 0.74 0.31 -0.32
12 AT4G26430 COP9 signalosome subunit 6B COP9 signalosome subunit 6B 0.74 0.35 -0.31
13 AT5G20570 RING-box 1 RING-BOX 1, HRT1, RING-box 1,
REGULATOR OF CULLINS-1		 0.74 0.33 -0.31
14 AT5G12200 pyrimidine 2 pyrimidine 2 -0.73 0.31 -0.32
15 AT3G48250 Pentatricopeptide repeat (PPR) superfamily protein Buthionine sulfoximine-insensitive
roots 6		 0.73 0.32 -0.3
16 AT1G28060 Pre-mRNA-splicing factor 3 0.73 0.3 -0.31
17 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.73 0.32 -0.32
18 AT5G11010 Pre-mRNA cleavage complex II protein family 0.73 0.33 -0.31
19 AT5G12220 las1-like family protein 0.72 0.33 -0.31
20 AT2G30260 U2 small nuclear ribonucleoprotein B U2 small nuclear ribonucleoprotein
B		 0.72 0.3 -0.32
21 AT4G23040 Ubiquitin-like superfamily protein 0.72 0.32 -0.33
22 AT3G08620 RNA-binding KH domain-containing protein 0.72 0.31 -0.3
23 AT1G22730 MA3 domain-containing protein 0.72 0.32 -0.3
24 AT2G25970 KH domain-containing protein 0.72 0.29 -0.31
25 AT3G19980 flower-specific, phytochrome-associated protein phosphatase
3		 flower-specific,
phytochrome-associated protein
phosphatase 3, EMBRYO DEFECTIVE
2736, flower-specific,
phytochrome-associated protein
phosphatase 3, SERINE/THREONINE
PROTEIN PHOSPHATASE		 0.72 0.32 -0.34
26 AT5G62030 diphthamide synthesis DPH2 family protein 0.71 0.32 -0.32
27 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 0.71 0.3 -0.33
28 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.71 0.29 -0.32
29 AT1G52730 Transducin/WD40 repeat-like superfamily protein 0.71 0.33 -0.29
30 AT5G46920 Intron maturase, type II family protein 0.71 0.31 -0.32
31 AT3G19630 Radical SAM superfamily protein 0.71 0.31 -0.31
32 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 0.71 0.31 -0.32
33 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 0.71 0.32 -0.34
34 AT1G13690 ATPase E1 ATPase E1 0.7 0.32 -0.3
35 AT3G44110 DNAJ homologue 3 ATJ, DNAJ homologue 3, J3 0.7 0.31 -0.33
36 AT1G07570 Protein kinase superfamily protein APK1, APK1A 0.7 0.32 -0.31
37 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.7 0.3 -0.32
38 AT2G37020 Translin family protein 0.7 0.31 -0.32
39 AT4G30150 CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA
processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast
hits to 49 proteins in 21 species: Archae - 0; Bacteria -
2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other
Eukaryotes - 7 (source: NCBI BLink).		 0.7 0.3 -0.3
40 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.7 0.31 -0.33
41 AT5G10840 Endomembrane protein 70 protein family 0.7 0.3 -0.3
42 AT2G20370 Exostosin family protein AtMUR3, KATAMARI 1, MURUS 3 0.7 0.32 -0.32
43 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.69 0.32 -0.32
44 AT1G53035 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.29 -0.3
45 AT1G18700 DNAJ heat shock N-terminal domain-containing protein 0.69 0.32 -0.31
46 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.69 0.31 -0.35
47 AT1G53500 NAD-dependent epimerase/dehydratase family protein ARABIDOPSIS THALIANA
MUCILAGE-MODIFIED 4, ARABIDOPSIS
THALIANA RHAMNOSE BIOSYNTHESIS 2,
MUCILAGE-MODIFIED 4, RHAMNOSE
BIOSYNTHESIS 2		 0.69 0.31 -0.31
48 AT5G49720 glycosyl hydrolase 9A1 glycosyl hydrolase 9A1, DEFECTIVE
CYTOKINESIS, glycosyl hydrolase
9A1, IRREGULAR XYLEM 2, KORRIGAN,
KORRIGAN 1, RADIALLY SWOLLEN 2,
TUMOROUS SHOOT DEVELOPMENT 1		 0.69 0.3 -0.31
49 AT5G25500 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.69 0.33 -0.3
50 AT3G16230 Predicted eukaryotic LigT -0.69 0.31 -0.32
51 AT3G57890 Tubulin binding cofactor C domain-containing protein 0.69 0.3 -0.31
52 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 0.69 0.33 -0.32
53 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 0.68 0.3 -0.32
54 AT3G05850 transposable element gene 0.68 0.31 -0.31
55 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.68 0.29 -0.33
56 AT1G32860 Glycosyl hydrolase superfamily protein 0.68 0.31 -0.3
57 AT1G48430 Dihydroxyacetone kinase -0.68 0.31 -0.31
58 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.68 0.31 -0.31
59 AT3G12570 FYD FYD 0.68 0.31 -0.31
60 AT5G13970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.68 0.31 -0.31
61 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 0.67 0.32 -0.31
62 AT4G12640 RNA recognition motif (RRM)-containing protein 0.67 0.32 -0.32
63 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.67 0.33 -0.32
64 AT5G49410 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G73940.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.67 0.32 -0.32
65 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.67 0.31 -0.27
66 AT5G07370 inositol polyphosphate kinase 2 alpha INOSITOL POLYPHOSPHATE KINASE 2
ALPHA, inositol polyphosphate
kinase 2 alpha		 0.67 0.33 -0.33
67 AT1G26850 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.67 0.34 -0.31
68 AT5G58130 RNA-binding (RRM/RBD/RNP motifs) family protein REPRESSOR OF SILENCING 3 0.67 0.33 -0.33
69 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 0.67 0.33 -0.31
70 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.67 0.31 -0.32
71 AT2G28380 dsRNA-binding protein 2 dsRNA-binding protein 2 0.67 0.31 -0.3
72 AT1G11390 Protein kinase superfamily protein 0.67 0.31 -0.32
73 AT3G61580 Fatty acid/sphingolipid desaturase AtSLD1, sphingoid LCB desaturase 1 0.67 0.31 -0.32
74 AT1G73710 Pentatricopeptide repeat (PPR) superfamily protein 0.67 0.32 -0.3
75 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.66 0.32 -0.29
76 AT5G47720 Thiolase family protein -0.66 0.32 -0.32
77 AT5G49380 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana
protein match is: binding (TAIR:AT3G06670.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.66 0.3 -0.33
78 AT2G15080 receptor like protein 19 receptor like protein 19, receptor
like protein 19		 -0.66 0.32 -0.3
79 AT1G63740 Disease resistance protein (TIR-NBS-LRR class) family -0.65 0.31 -0.3
80 AT2G15440 Protein of unknown function (DUF579) -0.65 0.31 -0.32
81 AT1G22540 Major facilitator superfamily protein -0.65 0.3 -0.3
82 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.3 -0.3
83 AT3G09410 Pectinacetylesterase family protein -0.63 0.31 -0.3
84 AT5G66420 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP033271 (InterPro:IPR008322), TIM-barrel signal
transduction protein, predicted (InterPro:IPR009215); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.61 0.3 -0.31
85 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.61 0.31 -0.33
86 AT4G19670 RING/U-box superfamily protein -0.59 0.31 -0.32
87 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein -0.59 0.31 -0.29
88 AT4G20490 transposable element gene -0.59 0.32 -0.32
89 AT3G46910 Cullin family protein -0.58 0.32 -0.3
90 AT1G15010 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits
to 71 proteins in 13 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.32 -0.33
91 AT3G30710 transposable element gene -0.58 0.31 -0.32
92 AT2G18470 roline-rich extensin-like receptor kinase 4 proline-rich extensin-like
receptor kinase 4, proline-rich
extensin-like receptor kinase 4		 -0.58 0.28 -0.32
93 AT5G52320 cytochrome P450, family 96, subfamily A, polypeptide 4 cytochrome P450, family 96,
subfamily A, polypeptide 4		 -0.58 0.3 -0.32
94 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.29 -0.33
95 AT1G41900 transposable element gene -0.57 0.32 -0.3
96 AT1G19170 Pectin lyase-like superfamily protein -0.56 0.3 -0.31
97 AT2G15640 F-box family protein -0.56 0.32 -0.31
98 AT2G05270 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.33 -0.31
99 AT2G41120 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 10 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF309
(InterPro:IPR005500); Has 349 Blast hits to 349 proteins in
112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi
- 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127
(source: NCBI BLink).		 -0.55 0.3 -0.34
100 AT1G03990 Long-chain fatty alcohol dehydrogenase family protein -0.55 0.33 -0.31
101 AT3G16280 Integrase-type DNA-binding superfamily protein -0.55 0.33 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
102 C0173 MST_2301.7 - - - 0.76 0.45 -0.44