AT3G06480 : -
Query Information
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AGICode AT3G06480
Description DEAD box RNA helicase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G06480 DEAD box RNA helicase family protein 1 0.31 -0.29
2 AT1G29260 peroxin 7 ARABIDOPSIS PEROXIN 7, peroxin 7 -0.8 0.33 -0.33
3 AT1G59580 mitogen-activated protein kinase homolog 2 mitogen-activated protein kinase
homolog 2, mitogen-activated
protein kinase homolog 2		 -0.77 0.31 -0.33
4 AT5G28020 cysteine synthase D2 CYSTEINE SYNTHASE D2, cysteine
synthase D2		 -0.76 0.29 -0.31
5 AT5G53440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.76 0.32 -0.3
6 AT1G53590 Calcium-dependent lipid-binding (CaLB domain) family
protein		 NTMC2T6.1, NTMC2TYPE6.1 0.74 0.34 -0.3
7 AT4G12750 Homeodomain-like transcriptional regulator 0.74 0.33 -0.32
8 AT1G06230 global transcription factor group E4 global transcription factor group
E4		 0.74 0.32 -0.3
9 AT3G12640 RNA binding (RRM/RBD/RNP motifs) family protein 0.72 0.33 -0.31
10 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein 0.72 0.31 -0.32
11 AT1G48410 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 1 0.72 0.34 -0.32
12 AT1G54850 HSP20-like chaperones superfamily protein -0.71 0.31 -0.34
13 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein -0.71 0.29 -0.33
14 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.71 0.32 -0.31
15 AT5G61960 MEI2-like protein 1 MEI2-like protein 1, MEI2-like
protein 1		 0.71 0.31 -0.31
16 AT5G16780 SART-1 family DEFECTIVELY ORGANIZED TRIBUTARIES
2, MERISTEM-DEFECTIVE		 0.7 0.28 -0.33
17 AT1G28060 Pre-mRNA-splicing factor 3 0.7 0.32 -0.31
18 AT1G53710 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.7 0.32 -0.3
19 AT1G75130 cytochrome P450, family 721, subfamily A, polypeptide 1 cytochrome P450, family 721,
subfamily A, polypeptide 1		 -0.7 0.33 -0.3
20 AT4G02710 Kinase interacting (KIP1-like) family protein 0.7 0.32 -0.31
21 AT1G20960 U5 small nuclear ribonucleoprotein helicase, putative embryo defective 1507 0.7 0.33 -0.34
22 AT3G16840 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.7 0.32 -0.32
23 AT2G19450 membrane bound O-acyl transferase (MBOAT) family protein ABX45, AS11, Arabidopsis thaliana
acyl-CoA:diacylglycerol
acyltransferase,
acyl-CoA:diacylglycerol
acyltransferase 1, RDS1,
TRIACYLGLYCEROL BIOSYNTHESIS
DEFECT 1		 0.69 0.32 -0.33
24 AT1G06780 galacturonosyltransferase 6 galacturonosyltransferase 6 0.69 0.31 -0.33
25 AT4G27820 beta glucosidase 9 beta glucosidase 9 0.69 0.31 -0.32
26 AT4G13950 ralf-like 31 ralf-like 31 -0.69 0.33 -0.31
27 AT3G55320 P-glycoprotein 20 ATP-binding cassette B20,
P-glycoprotein 20		 0.69 0.33 -0.29
28 AT1G10390 Nucleoporin autopeptidase 0.69 0.3 -0.32
29 AT3G58570 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.69 0.32 -0.33
30 AT3G12670 CTP synthase family protein embryo defective 2742 0.69 0.31 -0.33
31 AT5G09880 Splicing factor, CC1-like 0.69 0.32 -0.33
32 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.68 0.32 -0.32
33 AT1G33780 Protein of unknown function (DUF179) -0.68 0.31 -0.29
34 AT1G27900 RNA helicase family protein 0.68 0.32 -0.34
35 AT3G61540 alpha/beta-Hydrolases superfamily protein -0.67 0.31 -0.33
36 AT2G37520 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.67 0.33 -0.32
37 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.67 0.31 -0.31
38 AT2G47410 WD40/YVTN repeat-like-containing domain;Bromodomain 0.67 0.32 -0.32
39 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.67 0.32 -0.33
40 AT3G13225 WW domain-containing protein 0.67 0.32 -0.31
41 AT5G17030 UDP-glucosyl transferase 78D3 UDP-glucosyl transferase 78D3 0.67 0.33 -0.33
42 AT1G60560 SWIM zinc finger family protein 0.67 0.3 -0.31
43 AT3G62240 RING/U-box superfamily protein 0.67 0.3 -0.32
44 AT4G25500 arginine/serine-rich splicing factor 35 arginine/serine-rich splicing
factor 40, AT-SRP40, ARABIDOPSIS
THALIANA ARGININE/SERINE-RICH
SPLICING FACTOR 35, ATRSP40,
arginine/serine-rich splicing
factor 40, arginine/serine-rich
splicing factor 35		 0.67 0.32 -0.32
45 AT5G47400 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.67 0.31 -0.32
46 AT2G36360 Galactose oxidase/kelch repeat superfamily protein -0.66 0.34 -0.29
47 AT3G19670 pre-mRNA-processing protein 40B pre-mRNA-processing protein 40B,
pre-mRNA-processing protein 40B		 0.66 0.32 -0.32
48 AT4G11110 SPA1-related 2 SPA1-related 2 0.66 0.31 -0.31
49 AT3G58050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast
hits to 8116 proteins in 546 species: Archae - 41; Bacteria
- 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses
- 46; Other Eukaryotes - 4915 (source: NCBI BLink).		 0.66 0.3 -0.3
50 AT1G55500 evolutionarily conserved C-terminal region 4 evolutionarily conserved
C-terminal region 4		 0.66 0.33 -0.31
51 AT3G12680 floral homeotic protein (HUA1) ENHANCER OF AG-4 1 0.66 0.31 -0.31
52 AT3G02990 heat shock transcription factor A1E heat shock transcription factor
A1E, heat shock transcription
factor A1E		 0.66 0.32 -0.31
53 AT1G75860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits
to 235 proteins in 58 species: Archae - 0; Bacteria - 4;
Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.66 0.3 -0.32
54 AT3G21430 DNA binding ALWAYS EARLY 3, ARABIDOPSIS
THALIANA ALWAYS EARLY 3		 0.66 0.32 -0.31
55 AT5G01290 mRNA capping enzyme family protein 0.66 0.31 -0.3
56 AT1G60890 Phosphatidylinositol-4-phosphate 5-kinase family protein 0.66 0.32 -0.32
57 AT1G19000 Homeodomain-like superfamily protein -0.65 0.34 -0.32
58 AT1G30290 Tetratricopeptide repeat (TPR)-like superfamily protein 0.65 0.31 -0.33
59 AT4G02480 AAA-type ATPase family protein 0.65 0.31 -0.31
60 AT5G10630 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.65 0.31 -0.33
61 AT1G51610 Cation efflux family protein 0.65 0.33 -0.3
62 AT5G57110 autoinhibited Ca2+ -ATPase, isoform 8 autoinhibited Ca2+ -ATPase,
isoform 8, AUTOINHIBITED CA2+
-ATPASE, ISOFORM 8		 0.65 0.32 -0.33
63 AT5G01350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.65 0.31 -0.31
64 AT1G27630 cyclin T 1;3 cyclin T 1;3 0.65 0.32 -0.31
65 AT1G77600 ARM repeat superfamily protein 0.65 0.3 -0.32
66 AT3G10650 BEST Arabidopsis thaliana protein match is:
nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast
hits to 31782 proteins in 2093 species: Archae - 202;
Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants -
1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI
BLink).		 AtNUP1, NUP1 0.65 0.32 -0.33
67 AT1G20100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75860.1); Has 471 Blast hits
to 438 proteins in 92 species: Archae - 0; Bacteria - 14;
Metazoa - 217; Fungi - 43; Plants - 91; Viruses - 1; Other
Eukaryotes - 105 (source: NCBI BLink).		 0.65 0.32 -0.31
68 AT1G65000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits
to 49 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.31 -0.32
69 AT2G18915 LOV KELCH protein 2 ADAGIO 2, LOV KELCH protein 2 0.64 0.32 -0.32
70 AT1G03190 RAD3-like DNA-binding helicase protein ARABIDOPSIS THALIANA XERODERMA
PIGMENTOSUM GROUP D, ULTRAVIOLET
HYPERSENSITIVE 6		 0.64 0.31 -0.32
71 AT2G24762 glutamine dumper 4 glutamine dumper 4, glutamine
dumper 4		 -0.64 0.33 -0.32
72 AT1G79350 RING/FYVE/PHD zinc finger superfamily protein embryo defective 1135 0.64 0.3 -0.3
73 AT3G18100 myb domain protein 4r1 myb domain protein 4R1, myb domain
protein 4r1		 0.64 0.32 -0.32
74 AT4G20400 JUMONJI 14 JUMONJI 14, PKDM7B 0.64 0.31 -0.31
75 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.64 0.33 -0.3
76 AT1G47240 NRAMP metal ion transporter 2 ATNRAMP2, NRAMP metal ion
transporter 2		 0.64 0.31 -0.31
77 AT2G32250 FAR1-related sequence 2 FAR1-related sequence 2 0.64 0.32 -0.31
78 AT5G42220 Ubiquitin-like superfamily protein 0.64 0.31 -0.31
79 AT1G48360 zinc ion binding;nucleic acid binding;hydrolases, acting on
acid anhydrides, in phosphorus-containing anhydrides		 0.63 0.32 -0.31
80 AT5G59150 RAB GTPase homolog A2D ARABIDOPSIS RAB GTPASE HOMOLOG
A2D, RAB GTPase homolog A2D, RAB
GTPase homolog A2D		 -0.63 0.32 -0.32
81 AT2G39940 RNI-like superfamily protein CORONATINE INSENSITIVE 1 0.63 0.32 -0.32
82 AT1G50140 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.63 0.32 -0.32
83 AT5G61590 Integrase-type DNA-binding superfamily protein -0.63 0.32 -0.3
84 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.63 0.32 -0.3
85 AT1G01160 GRF1-interacting factor 2 GRF1-interacting factor 2 -0.63 0.34 -0.3
86 AT1G17110 ubiquitin-specific protease 15 ubiquitin-specific protease 15 0.63 0.32 -0.31
87 AT5G61380 CCT motif -containing response regulator protein APRR1, TIMING OF CAB EXPRESSION 1,
PSEUDO-RESPONSE REGULATOR 1,
TIMING OF CAB EXPRESSION 1		 0.63 0.3 -0.31
88 AT2G22090 RNA-binding (RRM/RBD/RNP motifs) family protein UBA1A -0.63 0.32 -0.33
89 AT5G42920 THO complex, subunit 5 AtTHO5, THO5 0.62 0.3 -0.36
90 AT2G27760 tRNAisopentenyltransferase 2 tRNAisopentenyltransferase 2,
IPPT, tRNAisopentenyltransferase 2		 0.62 0.3 -0.29
91 AT2G42390 protein kinase C substrate, heavy chain-related -0.62 0.3 -0.32
92 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.31 -0.32
93 AT2G40930 ubiquitin-specific protease 5 ATUBP5, PIGMENT DEFECTIVE EMBRYO
323, ubiquitin-specific protease 5		 0.62 0.33 -0.32
94 AT1G01040 dicer-like 1 ABNORMAL SUSPENSOR 1, DICER-LIKE
1, CARPEL FACTORY, dicer-like 1,
EMBRYO DEFECTIVE 60, EMBRYO
DEFECTIVE 76, SHORT INTEGUMENTS 1,
SUSPENSOR 1		 0.62 0.32 -0.31
95 AT4G28270 RING membrane-anchor 2 ATRMA2, RING membrane-anchor 2 -0.62 0.31 -0.3
96 AT1G15200 protein-protein interaction regulator family protein 0.62 0.31 -0.31
97 AT4G02010 Protein kinase superfamily protein 0.62 0.32 -0.3
98 AT1G31930 extra-large GTP-binding protein 3 extra-large GTP-binding protein 3 0.62 0.33 -0.32
99 AT1G53400 Ubiquitin domain-containing protein 0.62 0.32 -0.31
100 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.33 -0.29
101 AT5G22920 CHY-type/CTCHY-type/RING-type Zinc finger protein -0.61 0.3 -0.31
102 AT1G68530 3-ketoacyl-CoA synthase 6 ECERIFERUM 6, CUTICULAR 1, G2,
3-ketoacyl-CoA synthase 6,
POLLEN-PISTIL INCOMPATIBILITY 1		 -0.61 0.3 -0.32
103 AT5G61440 atypical CYS HIS rich thioredoxin 5 atypical CYS HIS rich thioredoxin
5		 -0.61 0.31 -0.31
104 AT1G79280 nuclear pore anchor TRANSLOCATED PROMOTER REGION,
nuclear pore anchor		 0.61 0.31 -0.31
105 AT5G23430 Transducin/WD40 repeat-like superfamily protein 0.61 0.3 -0.32
106 AT5G07580 Integrase-type DNA-binding superfamily protein -0.61 0.3 -0.3
107 AT5G51300 splicing factor-related 0.61 0.31 -0.31
108 AT1G43580 Sphingomyelin synthetase family protein -0.61 0.31 -0.31
109 AT4G12690 Plant protein of unknown function (DUF868) -0.61 0.3 -0.33
110 AT2G46330 arabinogalactan protein 16 arabinogalactan protein 16,
ATAGP16		 -0.6 0.33 -0.31
111 AT4G22753 sterol 4-alpha methyl oxidase 1-3 ATSMO1-3, sterol 4-alpha methyl
oxidase 1-3		 -0.6 0.31 -0.3
112 AT1G12550 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 hydroxypyruvate reductase 3 -0.6 0.31 -0.3
113 AT1G17350 NADH:ubiquinone oxidoreductase intermediate-associated
protein 30		 -0.6 0.32 -0.31
114 AT3G28940 AIG2-like (avirulence induced gene) family protein -0.59 0.31 -0.31
115 AT2G25570 binding -0.59 0.33 -0.31
116 AT3G21350 RNA polymerase transcriptional regulation mediator-related MED6 -0.58 0.32 -0.32
117 AT3G16990 Haem oxygenase-like, multi-helical -0.58 0.31 -0.29
118 AT1G20050 C-8,7 sterol isomerase HYDRA1 -0.58 0.31 -0.32
119 AT3G03320 RNA-binding ASCH domain protein -0.58 0.31 -0.31
120 AT3G50880 DNA glycosylase superfamily protein -0.58 0.31 -0.31
121 AT5G39400 Calcium/lipid-binding (CaLB) phosphatase ATPTEN1, Phosphatase and TENsin
homolog deleted on chromosome ten
1		 -0.58 0.3 -0.34
122 AT5G58220 transthyretin-like protein allantoin synthase,
transthyretin-like protein		 -0.58 0.33 -0.36
123 AT4G00780 TRAF-like family protein -0.57 0.3 -0.34
124 AT3G61430 plasma membrane intrinsic protein 1A ARABIDOPSIS THALIANA PLASMA
MEMBRANE INTRINSIC PROTEIN 1,
PLASMA MEMBRANE INTRINSIC PROTEIN
1, PLASMA MEMBRANE INTRINSIC
PROTEIN 1;1, plasma membrane
intrinsic protein 1A		 -0.57 0.3 -0.35
125 AT2G42040 CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has
219 Blast hits to 219 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 -0.56 0.32 -0.3
126 AT2G44760 Domain of unknown function (DUF3598) -0.56 0.31 -0.34
127 AT2G46225 ABI-1-like 1 ABI-1-like 1 -0.56 0.31 -0.33
128 AT1G52720 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits
to 61 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.33 -0.31
129 AT1G51360 dimeric A/B barrel domainS-protein 1 DIMERIC A/B BARREL DOMAINS-PROTEIN
1, dimeric A/B barrel
domainS-protein 1		 -0.56 0.3 -0.32
130 AT5G42440 Protein kinase superfamily protein -0.55 0.31 -0.31
131 AT2G46000 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Mesoderm development candidate 2 (InterPro:IPR019330); Has
31 Blast hits to 31 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.3 -0.3
132 AT1G71090 Auxin efflux carrier family protein -0.55 0.34 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
133 C0065 Cellobiose D-(+)-Cellobiose Cellobiose xyloglucan biosynthesis,
starch degradation I 		0.63 0.31 -0.33 C0065