AT1G71720 : PIGMENT DEFECTIVE 338
Query Information
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AGICode AT1G71720
Description Nucleic acid-binding proteins superfamily
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 1 0.31 -0.31
2 AT4G17740 Peptidase S41 family protein 0.93 0.34 -0.3
3 AT2G04270 RNAse E/G-like RNAse E/G-like 0.93 0.31 -0.31
4 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.93 0.31 -0.32
5 AT5G03940 chloroplast signal recognition particle 54 kDa subunit 54 CHLOROPLAST PROTEIN,
chloroplast signal recognition
particle 54 kDa subunit,
FIFTY-FOUR CHLOROPLAST HOMOLOGUE,
SIGNAL RECOGNITION PARTICLE 54 KDA
SUBUNIT CHLOROPLAST PROTEIN		 0.93 0.33 -0.29
6 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.92 0.29 -0.32
7 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.92 0.31 -0.32
8 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.92 0.29 -0.33
9 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.91 0.3 -0.31
10 AT1G26230 TCP-1/cpn60 chaperonin family protein chaperonin-60beta4 0.91 0.33 -0.3
11 AT5G19210 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.91 0.31 -0.33
12 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.91 0.33 -0.29
13 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.91 0.3 -0.32
14 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.91 0.3 -0.31
15 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.9 0.32 -0.32
16 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.9 0.3 -0.32
17 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.9 0.31 -0.34
18 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.9 0.28 -0.3
19 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.9 0.3 -0.32
20 AT1G14030 Rubisco methyltransferase family protein 0.9 0.31 -0.32
21 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.89 0.33 -0.3
22 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.89 0.31 -0.32
23 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.31 -0.29
24 AT4G23885 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.89 0.32 -0.31
25 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.89 0.31 -0.32
26 AT2G47590 photolyase/blue-light receptor 2 photolyase/blue-light receptor 2 0.89 0.31 -0.3
27 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.88 0.32 -0.31
28 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.88 0.33 -0.34
29 AT4G15110 cytochrome P450, family 97, subfamily B, polypeptide 3 cytochrome P450, family 97,
subfamily B, polypeptide 3		 0.88 0.3 -0.3
30 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.88 0.3 -0.34
31 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.88 0.33 -0.3
32 AT4G04350 tRNA synthetase class I (I, L, M and V) family protein EMBRYO DEFECTIVE 2369 0.88 0.3 -0.31
33 AT2G24060 Translation initiation factor 3 protein 0.88 0.32 -0.35
34 AT5G04810 pentatricopeptide (PPR) repeat-containing protein 0.88 0.35 -0.3
35 AT4G34090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.88 0.31 -0.32
36 AT1G30610 pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2279, EMBRYO
DEFECTIVE 88		 0.88 0.33 -0.32
37 AT1G10910 Pentatricopeptide repeat (PPR) superfamily protein EMBRYO DEFECTIVE 3103 0.87 0.31 -0.32
38 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 0.87 0.31 -0.34
39 AT1G78180 Mitochondrial substrate carrier family protein 0.87 0.29 -0.32
40 AT1G12860 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 INDUCER OF CBF EXPRESSION 2,
SCREAM 2		 0.87 0.31 -0.33
41 AT5G42480 Chaperone DnaJ-domain superfamily protein ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6		 0.87 0.32 -0.34
42 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.87 0.31 -0.33
43 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.87 0.31 -0.3
44 AT1G49380 cytochrome c biogenesis protein family 0.87 0.31 -0.34
45 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.87 0.32 -0.29
46 AT2G13440 glucose-inhibited division family A protein 0.87 0.34 -0.34
47 AT1G50450 Saccharopine dehydrogenase 0.87 0.32 -0.32
48 AT5G64380 Inositol monophosphatase family protein 0.87 0.32 -0.3
49 AT5G52100 Dihydrodipicolinate reductase, bacterial/plant chlororespiration reduction 1 0.87 0.33 -0.32
50 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.87 0.3 -0.31
51 AT3G60750 Transketolase 0.86 0.33 -0.32
52 AT3G10160 DHFS-FPGS homolog C A. THALIANA DHFS-FPGS HOMOLOG C,
DHFS-FPGS homolog C,
folylpolyglutamate synthetase 2		 0.86 0.31 -0.33
53 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.86 0.32 -0.3
54 AT1G42550 plastid movement impaired1 PLASTID MOVEMENT IMPAIRED1 0.86 0.3 -0.32
55 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.86 0.3 -0.32
56 AT5G66470 RNA binding;GTP binding 0.86 0.32 -0.33
57 AT3G43540 Protein of unknown function (DUF1350) 0.86 0.31 -0.29
58 AT3G26744 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 A. THALIANA INDUCER OF CBP
EXPRESSION 1, INDUCER OF CBF
EXPRESSION 1, SCREAM		 0.86 0.3 -0.33
59 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.86 0.3 -0.31
60 AT3G16000 MAR binding filament-like protein 1 MAR binding filament-like protein
1		 0.86 0.32 -0.32
61 AT3G24430 ATP binding HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.86 0.31 -0.32
62 AT1G17220 Translation initiation factor 2, small GTP-binding protein fu-gaeri1 0.86 0.31 -0.31
63 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.86 0.32 -0.32
64 AT3G63140 chloroplast stem-loop binding protein of 41 kDa chloroplast stem-loop binding
protein of 41 kDa		 0.86 0.3 -0.33
65 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.86 0.34 -0.3
66 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.86 0.32 -0.29
67 AT5G08650 Small GTP-binding protein 0.86 0.33 -0.31
68 AT3G10840 alpha/beta-Hydrolases superfamily protein 0.85 0.31 -0.31
69 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.85 0.31 -0.3
70 AT1G20870 HSP20-like chaperones superfamily protein 0.85 0.31 -0.33
71 AT1G77110 Auxin efflux carrier family protein PIN-FORMED 6 0.85 0.31 -0.32
72 AT1G60990 Glycine cleavage T-protein family 0.85 0.31 -0.34
73 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.85 0.29 -0.32
74 AT1G73090 unknown protein; Has 28 Blast hits to 28 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.84 0.33 -0.32
75 AT5G10470 kinesin like protein for actin based chloroplast movement 1 kinesin like protein for actin
based chloroplast movement 1,
KINESIN CDKA;1 ASSOCIATED 1		 0.84 0.32 -0.32
76 AT3G12080 GTP-binding family protein embryo defective 2738 0.84 0.3 -0.33
77 AT4G18240 starch synthase 4 ARABIDOPSIS THALIANA STARCH
SYNTHASE 4, starch synthase 4,
STARCH SYNTHASE 4		 0.84 0.3 -0.32
78 AT3G25690 Hydroxyproline-rich glycoprotein family protein Arabidopsis thaliana CHLOROPLAST
UNUSUAL POSITIONING 1, CHLOROPLAST
UNUSUAL POSITIONING 1		 0.84 0.31 -0.32
79 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.84 0.31 -0.31
80 AT1G64680 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits
to 146 proteins in 26 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 0.84 0.3 -0.31
81 AT4G28080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.84 0.32 -0.31
82 AT4G19070 Putative membrane lipoprotein 0.84 0.34 -0.32
83 AT4G37080 Protein of unknown function, DUF547 0.84 0.31 -0.31
84 AT4G22530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.82 0.32 -0.32
85 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.82 0.29 -0.31
86 AT3G09270 glutathione S-transferase TAU 8 glutathione S-transferase TAU 8,
glutathione S-transferase TAU 8		 -0.81 0.3 -0.32
87 AT4G19880 Glutathione S-transferase family protein -0.81 0.3 -0.33
88 AT3G22850 Aluminium induced protein with YGL and LRDR motifs -0.81 0.29 -0.32
89 AT3G17820 glutamine synthetase 1.3 ARABIDOPSIS THALIANA GLUTAMINE
SYNTHASE CLONE KB6, glutamine
synthetase 1.3, GLUTAMINE
SYNTHETASE 1;3		 -0.81 0.29 -0.34
90 AT1G72680 cinnamyl-alcohol dehydrogenase CINNAMYL ALCOHOL DEHYDROGENASE 1,
cinnamyl-alcohol dehydrogenase		 -0.81 0.33 -0.31
91 AT4G07390 Mannose-P-dolichol utilization defect 1 protein -0.81 0.31 -0.34
92 AT5G06750 Protein phosphatase 2C family protein -0.8 0.31 -0.32
93 AT3G28850 Glutaredoxin family protein -0.8 0.31 -0.33
94 AT3G02360 6-phosphogluconate dehydrogenase family protein -0.79 0.3 -0.33
95 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.79 0.3 -0.29
96 AT1G63460 glutathione peroxidase 8 ATGPX8, glutathione peroxidase 8 -0.79 0.33 -0.32
97 AT1G60420 DC1 domain-containing protein -0.79 0.29 -0.31
98 AT5G07440 glutamate dehydrogenase 2 glutamate dehydrogenase 2 -0.79 0.32 -0.33
99 AT5G51040 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF339 (InterPro:IPR005631); Has 532 Blast
hits to 532 proteins in 207 species: Archae - 0; Bacteria -
285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0;
Other Eukaryotes - 150 (source: NCBI BLink).		 -0.78 0.32 -0.32
100 AT5G18270 Arabidopsis NAC domain containing protein 87 Arabidopsis NAC domain containing
protein 87		 -0.78 0.31 -0.31
101 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.78 0.31 -0.34
102 AT2G47520 Integrase-type DNA-binding superfamily protein Arabidopsis thaliana ethylene
response factor 71, ethylene
response factor 71, HYPOXIA
RESPONSIVE ERF (ETHYLENE RESPONSE
FACTOR) 2		 -0.78 0.3 -0.31
103 AT5G17380 Thiamine pyrophosphate dependent pyruvate decarboxylase
family protein		 -0.78 0.3 -0.34
104 AT1G30040 gibberellin 2-oxidase gibberellin 2-oxidase, gibberellin
2-oxidase, GIBBERELLIN 2-OXIDASE 2		 -0.77 0.33 -0.3
105 AT5G59510 ROTUNDIFOLIA like 5 DEVIL 18, ROTUNDIFOLIA like 5 -0.77 0.32 -0.32
106 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.77 0.33 -0.32
107 AT2G47470 thioredoxin family protein ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 11, PDI-LIKE
2-1, MATERNAL EFFECT EMBRYO ARREST
30, PROTEIN DISULFIDE ISOMERASE
11, UNFERTILIZED EMBRYO SAC 5		 -0.77 0.3 -0.33
108 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.77 0.29 -0.32
109 AT5G65020 annexin 2 annexin 2 -0.77 0.32 -0.33
110 AT4G25900 Galactose mutarotase-like superfamily protein -0.76 0.3 -0.31
111 AT1G65820 microsomal glutathione s-transferase, putative -0.76 0.31 -0.31
112 AT4G25810 xyloglucan endotransglycosylase 6 xyloglucan
endotransglucosylase/hydrolase 23,
xyloglucan endotransglycosylase 6		 -0.76 0.32 -0.33
113 AT3G27380 succinate dehydrogenase 2-1 succinate dehydrogenase 2-1 -0.76 0.32 -0.31
114 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.76 0.32 -0.32
115 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.76 0.33 -0.32
116 AT1G60730 NAD(P)-linked oxidoreductase superfamily protein -0.76 0.33 -0.32
117 AT3G44320 nitrilase 3 NITRILASE 3, nitrilase 3 -0.76 0.3 -0.32
118 AT5G59140 BTB/POZ domain-containing protein -0.75 0.29 -0.31
119 AT1G52140 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits
to 114 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.75 0.3 -0.31
120 AT1G78660 gamma-glutamyl hydrolase 1 gamma-glutamyl hydrolase 1,
gamma-glutamyl hydrolase 1		 -0.75 0.32 -0.31
121 AT1G15670 Galactose oxidase/kelch repeat superfamily protein -0.75 0.33 -0.33
122 AT2G01650 plant UBX domain-containing protein 2 plant UBX domain-containing
protein 2		 -0.74 0.31 -0.34
123 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.74 0.3 -0.33
124 AT2G22480 phosphofructokinase 5 phosphofructokinase 5 -0.74 0.33 -0.31
125 AT2G31390 pfkB-like carbohydrate kinase family protein -0.74 0.31 -0.34
126 AT1G74020 strictosidine synthase 2 strictosidine synthase 2 -0.74 0.32 -0.32
127 AT1G71170 6-phosphogluconate dehydrogenase family protein -0.74 0.32 -0.32
128 AT5G63680 Pyruvate kinase family protein -0.74 0.3 -0.33
129 AT5G11970 Protein of unknown function (DUF3511) -0.74 0.31 -0.31
130 AT2G01470 SEC12P-like 2 protein ATSEC12, SEC12P-like 2 protein -0.74 0.32 -0.31
131 AT4G27320 Adenine nucleotide alpha hydrolases-like superfamily
protein		 ATPHOS34, PHOS34 -0.74 0.32 -0.33
132 AT5G45410 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits
to 124 proteins in 34 species: Archae - 2; Bacteria - 31;
Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.33 -0.31
133 AT4G39955 alpha/beta-Hydrolases superfamily protein -0.73 0.31 -0.32
134 AT5G07220 BCL-2-associated athanogene 3 BCL-2-associated athanogene 3,
BCL-2-associated athanogene 3		 -0.73 0.3 -0.31
135 AT1G35910 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
D		 -0.73 0.3 -0.33
136 AT3G54960 PDI-like 1-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 1, PDI-like
1-3, PROTEIN DISULFIDE ISOMERASE
1, PDI-like 1-3		 -0.72 0.31 -0.31
137 AT2G25110 stromal cell-derived factor 2-like protein precursor Arabidopsis thaliana STROMAL
CELL-DERIVED FACTOR 2-like protein
precursor, ATSDF2-LIKE, stromal
cell-derived factor 2-like protein
precursor		 -0.72 0.32 -0.33
138 AT5G22890 C2H2 and C2HC zinc fingers superfamily protein -0.72 0.31 -0.32