AT1G15510 : ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2
Query Information
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AGICode AT1G15510
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1		 1 0.3 -0.31
2 AT1G48570 zinc finger (Ran-binding) family protein 0.86 0.31 -0.34
3 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.86 0.31 -0.3
4 AT1G09830 Glycinamide ribonucleotide (GAR) synthetase 0.85 0.33 -0.31
5 AT2G37400 Tetratricopeptide repeat (TPR)-like superfamily protein 0.84 0.32 -0.33
6 AT1G59990 DEA(D/H)-box RNA helicase family protein EMBRYO DEFECTIVE 3108, RNA
helicase 22		 0.83 0.31 -0.31
7 AT3G13230 RNA-binding KH domain-containing protein 0.83 0.33 -0.31
8 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1		 0.81 0.31 -0.32
9 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3		 0.81 0.34 -0.3
10 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 0.81 0.33 -0.31
11 AT1G48920 nucleolin like 1 nucleolin like 1, nucleolin like
1, PARALLEL 1		 0.81 0.3 -0.32
12 AT2G04030 Chaperone protein htpG family protein HEAT SHOCK PROTEIN 90.5, CR88,
EMBRYO DEFECTIVE 1956, HEAT SHOCK
PROTEIN 88.1, HEAT SHOCK PROTEIN
90.5		 0.81 0.33 -0.31
13 AT5G14050 Transducin/WD40 repeat-like superfamily protein 0.81 0.32 -0.31
14 AT4G30700 Pentatricopeptide repeat (PPR) superfamily protein 0.81 0.32 -0.31
15 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.81 0.32 -0.32
16 AT1G08610 Pentatricopeptide repeat (PPR) superfamily protein 0.81 0.3 -0.32
17 AT4G34740 GLN phosphoribosyl pyrophosphate amidotransferase 2 GLN phosphoribosyl pyrophosphate
amidotransferase 2, GLN
phosphoribosyl pyrophosphate
amidotransferase 2, ATPURF2,
CHLOROPLAST IMPORT APPARATUS 1		 0.8 0.32 -0.32
18 AT4G31210 DNA topoisomerase, type IA, core 0.8 0.32 -0.32
19 AT4G38710 glycine-rich protein 0.8 0.31 -0.32
20 AT3G23940 dehydratase family 0.79 0.3 -0.31
21 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 0.79 0.3 -0.31
22 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.79 0.3 -0.32
23 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.78 0.31 -0.34
24 AT4G02510 translocon at the outer envelope membrane of chloroplasts
159		 ATTOC159, PLASTID PROTEIN IMPORT
2, translocon at the outer
envelope membrane of chloroplasts
159, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
160, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
86		 0.78 0.34 -0.28
25 AT5G41670 6-phosphogluconate dehydrogenase family protein 0.78 0.31 -0.28
26 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.78 0.33 -0.32
27 AT5G61990 Pentatricopeptide repeat (PPR) superfamily protein 0.78 0.31 -0.3
28 AT2G23350 poly(A) binding protein 4 poly(A) binding protein 4, POLY(A)
BINDING PROTEIN 4		 0.78 0.33 -0.3
29 AT4G39530 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.34 -0.31
30 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 0.78 0.29 -0.32
31 AT1G69070 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nop14-like protein (InterPro:IPR007276); Has 69842 Blast
hits to 35213 proteins in 1572 species: Archae - 363;
Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants -
2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI
BLink).		 0.77 0.31 -0.3
32 AT2G34357 ARM repeat superfamily protein 0.77 0.32 -0.29
33 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.77 0.35 -0.32
34 AT1G69950 transposable element gene 0.77 0.33 -0.32
35 AT5G05230 RING/U-box superfamily protein -0.76 0.33 -0.3
36 AT1G48650 DEA(D/H)-box RNA helicase family protein 0.76 0.31 -0.32
37 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f -0.76 0.33 -0.32
38 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 0.76 0.33 -0.34
39 AT2G24050 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G2		 0.76 0.3 -0.3
40 AT3G61100 Putative endonuclease or glycosyl hydrolase 0.76 0.33 -0.3
41 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1		 0.76 0.32 -0.32
42 AT1G50920 Nucleolar GTP-binding protein 0.76 0.32 -0.3
43 AT2G21790 ribonucleotide reductase 1 RIBONUCLEOTIDE REDUCTASE LARGE
SUBUNIT 1, CRINKLY LEAVES 8,
RIBONUCLEOTIDE REDUCTASE 1,
ribonucleotide reductase 1		 0.76 0.3 -0.32
44 AT5G11490 adaptin family protein 0.75 0.31 -0.32
45 AT3G10690 DNA GYRASE A DNA GYRASE A 0.75 0.33 -0.33
46 AT1G14710 hydroxyproline-rich glycoprotein family protein 0.75 0.33 -0.31
47 AT2G17820 histidine kinase 1 AHK1, histidine kinase 1,
histidine kinase 1		 0.75 0.33 -0.32
48 AT5G39980 Tetratricopeptide repeat (TPR)-like superfamily protein 0.75 0.35 -0.32
49 AT3G14900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: embryo development; LOCATED IN: chloroplast;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13
growth stages; Has 17135 Blast hits to 10204 proteins in
644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536;
Fungi - 2506; Plants - 1043; Viruses - 361; Other
Eukaryotes - 5958 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3120 0.75 0.31 -0.33
50 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.75 0.33 -0.34
51 AT3G56090 ferritin 3 ferritin 3, ferritin 3 0.75 0.29 -0.31
52 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 CLUMPED CHLOROPLASTS 1, Phox2 0.75 0.32 -0.34
53 AT5G49710 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.74 0.32 -0.32
54 AT3G01160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: NUC153
(InterPro:IPR012580); Has 36638 Blast hits to 21323
proteins in 1057 species: Archae - 109; Bacteria - 2369;
Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses -
489; Other Eukaryotes - 13360 (source: NCBI BLink).		 0.74 0.32 -0.32
55 AT1G06380 Ribosomal protein L1p/L10e family 0.74 0.32 -0.35
56 AT5G57900 SKP1 interacting partner 1 SKP1 interacting partner 1 -0.74 0.31 -0.32
57 AT2G16400 BEL1-like homeodomain 7 BEL1-like homeodomain 7 0.74 0.31 -0.31
58 AT1G72550 tRNA synthetase beta subunit family protein 0.74 0.3 -0.32
59 AT4G17840 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Abortive infection protein (InterPro:IPR003675); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.73 0.31 -0.31
60 AT5G59600 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.31 -0.35
61 AT4G38010 Pentatricopeptide repeat (PPR-like) superfamily protein 0.73 0.32 -0.3
62 AT5G40480 embryo defective 3012 embryo defective 3012 0.73 0.3 -0.33
63 AT1G72440 CCAAT-binding factor embryo sac development arrest 25,
SLOW WALKER2		 0.73 0.31 -0.31
64 AT4G27010 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis
N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72270.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 EMBRYO DEFECTIVE 2788 0.73 0.3 -0.28
65 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c -0.73 0.33 -0.34
66 AT1G74260 purine biosynthesis 4 purine biosynthesis 4 0.73 0.33 -0.31
67 AT1G29880 glycyl-tRNA synthetase / glycine--tRNA ligase 0.73 0.3 -0.31
68 AT2G47710 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.72 0.33 -0.34
69 AT4G14500 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.72 0.32 -0.32
70 AT5G38895 RING/U-box superfamily protein -0.72 0.32 -0.32
71 AT3G04670 WRKY DNA-binding protein 39 WRKY DNA-BINDING PROTEIN 39, WRKY
DNA-binding protein 39		 -0.71 0.32 -0.32
72 AT5G58740 HSP20-like chaperones superfamily protein -0.71 0.3 -0.3
73 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1		 -0.7 0.34 -0.31
74 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.31 -0.33
75 AT4G24400 CBL-interacting protein kinase 8 ATCIPK8, CBL-interacting protein
kinase 8, PROTEIN KINASE 11,
SNF1-RELATED PROTEIN KINASE 3.13		 -0.69 0.31 -0.32
76 AT3G02340 RING/U-box superfamily protein -0.67 0.32 -0.3
77 AT5G16120 alpha/beta-Hydrolases superfamily protein -0.67 0.33 -0.3
78 AT4G26160 atypical CYS HIS rich thioredoxin 1 atypical CYS HIS rich thioredoxin
1		 -0.67 0.31 -0.32
79 AT3G17365 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.66 0.32 -0.31
80 AT1G75280 NmrA-like negative transcriptional regulator family protein -0.65 0.31 -0.35
81 AT3G19380 plant U-box 25 plant U-box 25 -0.64 0.3 -0.29
82 AT3G48710 DEK domain-containing chromatin associated protein -0.64 0.33 -0.35
83 AT4G20380 LSD1 zinc finger family protein LESION SIMULATING DISEASE -0.64 0.32 -0.3
84 AT2G38740 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.64 0.31 -0.34
85 AT1G22985 Integrase-type DNA-binding superfamily protein cytokinin response factor 7 -0.63 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
86 C0217 Putative glucosinole - - - 0.89 0.46 -0.42
87 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.67 0.41 -0.45