AT1G54260 : -
Query Information
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AGICode AT1G54260
Description winged-helix DNA-binding transcription factor family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G54260 winged-helix DNA-binding transcription factor family
protein		 1 0.32 -0.34
2 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 0.71 0.32 -0.31
3 AT5G16210 HEAT repeat-containing protein 0.71 0.32 -0.3
4 AT4G00040 Chalcone and stilbene synthase family protein 0.7 0.31 -0.31
5 AT1G31600 RNA-binding (RRM/RBD/RNP motifs) family protein Arabidopsis thaliana tRNA
methyltransferase 9, tRNA
methyltransferase 9		 0.7 0.3 -0.32
6 AT5G35180 Protein of unknown function (DUF1336) 0.7 0.31 -0.3
7 AT1G79830 golgin candidate 5 golgin candidate 5 0.69 0.33 -0.3
8 AT4G34140 D111/G-patch domain-containing protein 0.69 0.32 -0.31
9 AT1G07410 RAB GTPase homolog A2B ARABIDOPSIS RAB GTPASE HOMOLOG
A2B, RAB GTPase homolog A2B, RAB
GTPASE HOMOLOG A2B, RAB GTPase
homolog A2B		 -0.68 0.33 -0.3
10 AT3G61010 Ferritin/ribonucleotide reductase-like family protein 0.68 0.34 -0.3
11 AT5G22760 PHD finger family protein 0.68 0.32 -0.29
12 AT2G03140 alpha/beta-Hydrolases superfamily protein 0.67 0.32 -0.32
13 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 0.67 0.3 -0.31
14 AT4G37460 Tetratricopeptide repeat (TPR)-like superfamily protein SUPPRESSOR OF RPS4-RLD 1 0.67 0.32 -0.31
15 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein 0.66 0.32 -0.31
16 AT5G06100 myb domain protein 33 ATMYB33, myb domain protein 33 0.66 0.31 -0.33
17 ATMG00400 hypothetical protein ORF157 0.66 0.31 -0.31
18 AT4G18130 phytochrome E phytochrome E 0.66 0.31 -0.29
19 AT1G09420 glucose-6-phosphate dehydrogenase 4 glucose-6-phosphate dehydrogenase
4		 0.66 0.3 -0.3
20 AT2G46560 transducin family protein / WD-40 repeat family protein 0.66 0.31 -0.31
21 AT2G46930 Pectinacetylesterase family protein -0.65 0.31 -0.3
22 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 0.65 0.3 -0.32
23 AT2G17975 zinc finger (Ran-binding) family protein 0.65 0.31 -0.32
24 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.65 0.32 -0.32
25 AT3G01320 SIN3-like 1 SIN3-like 1 0.65 0.31 -0.32
26 AT5G55310 DNA topoisomerase 1 beta TOPOISOMERASE 1, DNA topoisomerase
1 beta		 0.65 0.33 -0.31
27 AT4G28180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; Has 1508
Blast hits to 1315 proteins in 223 species: Archae - 4;
Bacteria - 127; Metazoa - 687; Fungi - 310; Plants - 142;
Viruses - 28; Other Eukaryotes - 210 (source: NCBI BLink).		 -0.65 0.33 -0.3
28 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 0.64 0.31 -0.3
29 AT2G22530 Alkaline-phosphatase-like family protein 0.64 0.32 -0.33
30 AT3G13065 STRUBBELIG-receptor family 4 STRUBBELIG-receptor family 4 0.63 0.28 -0.31
31 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 0.63 0.32 -0.31
32 AT5G59380 methyl-CPG-binding domain 6 ATMBD6, methyl-CPG-binding domain
6		 -0.63 0.32 -0.32
33 AT1G62130 AAA-type ATPase family protein 0.63 0.3 -0.3
34 AT3G20620 F-box family protein-related 0.63 0.31 -0.32
35 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 0.63 0.31 -0.34
36 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 0.63 0.33 -0.31
37 AT2G13370 chromatin remodeling 5 chromatin remodeling 5 0.63 0.28 -0.29
38 AT1G54360 TBP-ASSOCIATED FACTOR 6B TBP-ASSOCIATED FACTOR 6B,
TBP-ASSOCIATED FACTOR 6B1,
TBP-ASSOCIATED FACTOR 6B2,
TBP-associated factor 6B4		 0.63 0.32 -0.32
39 AT5G24670 Cytidine/deoxycytidylate deaminase family protein EMBRYO DEFECTIVE 2820, tRNA
adenosine deaminase 3		 0.62 0.31 -0.32
40 AT1G80580 Integrase-type DNA-binding superfamily protein 0.62 0.32 -0.31
41 AT4G32660 Protein kinase superfamily protein AME3 0.62 0.34 -0.32
42 AT3G43220 Phosphoinositide phosphatase family protein 0.62 0.31 -0.32
43 AT1G55250 histone mono-ubiquitination 2 histone mono-ubiquitination 2 0.62 0.35 -0.31
44 AT4G03205 Coproporphyrinogen III oxidase hemf2 0.62 0.3 -0.32
45 AT1G80680 SUPPRESSOR OF AUXIN RESISTANCE 3 MODIFIER OF SNC1,3, NUP96,
PRECOCIOUS, SUPPRESSOR OF AUXIN
RESISTANCE 3		 -0.62 0.31 -0.3
46 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 0.62 0.3 -0.31
47 AT1G53670 methionine sulfoxide reductase B 1 ATMSRB1, methionine sulfoxide
reductase B 1		 0.62 0.3 -0.31
48 AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34b,
Serine/Arginine-Rich Protein
Splicing Factor 34b		 0.62 0.32 -0.29
49 AT2G32950 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS THALIANA CONSTITUTIVE
PHOTOMORPHOGENIC 1, CONSTITUTIVE
PHOTOMORPHOGENIC 1, DEETIOLATED
MUTANT 340, EMBRYO DEFECTIVE 168,
FUSCA 1		 0.61 0.33 -0.33
50 AT5G13020 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML3, EMSY-like 3 0.61 0.32 -0.32
51 AT5G55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein		 0.61 0.31 -0.33
52 AT3G52610 unknown protein; Has 68 Blast hits to 67 proteins in 21
species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.61 0.31 -0.31
53 AT1G59520 CW7 CW7 0.61 0.33 -0.32
54 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 0.61 0.32 -0.3
55 AT5G15540 PHD finger family protein ARABIDOPSIS THALIANA
SISTER-CHROMATID COHESION 2,
EMBRYO DEFECTIVE 2773,
SISTER-CHROMATID COHESION 2		 0.6 0.32 -0.3
56 AT2G25850 poly(A) polymerase 2 poly(A) polymerase 2 0.6 0.33 -0.33
57 AT4G28440 Nucleic acid-binding, OB-fold-like protein -0.6 0.31 -0.31
58 AT4G19440 Tetratricopeptide repeat (TPR)-like superfamily protein 0.6 0.3 -0.3
59 AT1G79280 nuclear pore anchor TRANSLOCATED PROMOTER REGION,
nuclear pore anchor		 0.6 0.32 -0.29
60 AT3G62190 Chaperone DnaJ-domain superfamily protein 0.6 0.31 -0.33
61 AT5G65930 kinesin-like calmodulin-binding protein (ZWICHEL) KINESIN-LIKE CALMODULIN-BINDING
PROTEIN, POTATO KINESIN-LIKE
CALMODULIN-BINDING PROTEIN,
ZWICHEL		 0.6 0.32 -0.33
62 AT1G74840 Homeodomain-like superfamily protein -0.6 0.31 -0.29
63 AT3G01180 starch synthase 2 starch synthase 2, starch synthase
2		 0.6 0.31 -0.33
64 AT1G23590 Domain of unknown function DUF220 -0.59 0.3 -0.31
65 AT2G20300 Protein kinase superfamily protein Abnormal Leaf Shape 2 -0.59 0.35 -0.32
66 AT3G46380 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.59 0.31 -0.31
67 AT5G62810 peroxin 14 ATPEX14, PEROXISOME DEFECTIVE 2,
peroxin 14		 0.59 0.34 -0.32
68 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 0.59 0.31 -0.3
69 AT5G46470 disease resistance protein (TIR-NBS-LRR class) family RESISTANT TO P. SYRINGAE 6 0.58 0.3 -0.31
70 AT1G60490 vacuolar protein sorting 34 ATVPS34, PHOSPATIDYLINOSITOL
3-KINASE, vacuolar protein sorting
34		 0.58 0.32 -0.31
71 AT5G20950 Glycosyl hydrolase family protein -0.58 0.31 -0.32
72 AT5G44450 methyltransferases -0.58 0.33 -0.31
73 AT1G27360 squamosa promoter-like 11 squamosa promoter-like 11 0.58 0.33 -0.32
74 AT1G29140 Pollen Ole e 1 allergen and extensin family protein 0.57 0.3 -0.32
75 AT5G19660 SITE-1 protease SITE-1 PROTEASE, ATSBT6.1, SITE-1
protease		 0.57 0.3 -0.32
76 AT4G22840 Sodium Bile acid symporter family 0.57 0.31 -0.31
77 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 0.57 0.32 -0.31
78 AT1G26410 FAD-binding Berberine family protein 0.57 0.31 -0.31
79 AT3G50870 GATA type zinc finger transcription factor family protein GATA TRANSCRIPTION FACTOR 18,
HANABA TANARU, MONOPOLE		 -0.56 0.34 -0.3
80 AT4G31020 alpha/beta-Hydrolases superfamily protein -0.56 0.34 -0.33
81 AT3G58080 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.34 -0.33
82 AT2G42270 U5 small nuclear ribonucleoprotein helicase 0.56 0.34 -0.32
83 AT2G41810 Protein of unknown function, DUF642 -0.56 0.31 -0.3
84 AT1G27370 squamosa promoter binding protein-like 10 squamosa promoter binding
protein-like 10		 0.56 0.3 -0.32
85 AT3G12100 Cation efflux family protein 0.56 0.3 -0.32
86 AT5G52020 Integrase-type DNA-binding superfamily protein -0.55 0.31 -0.31
87 AT1G78390 nine-cis-epoxycarotenoid dioxygenase 9 NINE-CIS-EPOXYCAROTENOID
DIOXYGENASE 9,
nine-cis-epoxycarotenoid
dioxygenase 9		 -0.55 0.31 -0.3
88 AT2G12610 transposable element gene -0.54 0.31 -0.32
89 AT2G21460 transposable element gene -0.53 0.31 -0.31
90 AT3G25420 serine carboxypeptidase-like 21 serine carboxypeptidase-like 21 -0.53 0.33 -0.33
91 AT5G17350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.52 0.32 -0.3
92 AT3G16950 lipoamide dehydrogenase 1 lipoamide dehydrogenase 1, ptlpd1 -0.52 0.34 -0.33
93 AT2G29995 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G07175.1); Has 14 Blast hits to 14 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.51 0.31 -0.31
94 AT1G31070 N-acetylglucosamine-1-phosphate uridylyltransferase 1 N-acetylglucosamine-1-phosphate
uridylyltransferase 1		 -0.51 0.33 -0.33
95 AT3G32000 transposable element gene -0.51 0.3 -0.32
96 AT1G29870 tRNA synthetase class II (G, H, P and S) family protein -0.51 0.32 -0.32
97 AT5G52670 Copper transport protein family -0.51 0.3 -0.3
98 AT3G18030 HAL3-like protein A ATHAL3, ARABIDOPSIS THALIANA
HAL3-LIKE PROTEIN A, HALOTOLERANCE
DETERMINANT 3, HAL3-like protein A		 -0.5 0.3 -0.31
99 AT1G79070 SNARE-associated protein-related -0.5 0.29 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
100 C0187 Neoeriocitrin - - - -0.63 0.44 -0.43