AT1G78630 : embryo defective 1473
Query Information
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AGICode AT1G78630
Description Ribosomal protein L13 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 1 0.32 -0.32
2 AT5G65220 Ribosomal L29 family protein 0.97 0.3 -0.34
3 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.97 0.31 -0.31
4 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.97 0.31 -0.31
5 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.96 0.29 -0.31
6 AT2G33450 Ribosomal L28 family 0.96 0.32 -0.32
7 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.96 0.34 -0.3
8 AT3G54210 Ribosomal protein L17 family protein 0.95 0.33 -0.32
9 AT3G12930 Lojap-related protein 0.95 0.31 -0.3
10 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.95 0.34 -0.32
11 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.95 0.32 -0.3
12 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.95 0.32 -0.32
13 AT5G55220 trigger factor type chaperone family protein 0.95 0.32 -0.32
14 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.95 0.33 -0.33
15 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.94 0.32 -0.33
16 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.94 0.32 -0.33
17 AT5G47190 Ribosomal protein L19 family protein 0.94 0.32 -0.31
18 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.94 0.3 -0.31
19 AT3G13120 Ribosomal protein S10p/S20e family protein 0.94 0.33 -0.31
20 AT1G14270 CAAX amino terminal protease family protein 0.94 0.31 -0.33
21 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.94 0.31 -0.31
22 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.94 0.32 -0.31
23 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.93 0.29 -0.33
24 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.93 0.33 -0.33
25 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.93 0.29 -0.31
26 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.93 0.3 -0.32
27 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.93 0.32 -0.3
28 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.93 0.31 -0.34
29 AT4G17560 Ribosomal protein L19 family protein 0.93 0.3 -0.31
30 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.93 0.32 -0.32
31 AT2G43030 Ribosomal protein L3 family protein 0.93 0.33 -0.33
32 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.93 0.32 -0.32
33 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.92 0.32 -0.32
34 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.92 0.31 -0.32
35 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.92 0.32 -0.29
36 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.92 0.29 -0.33
37 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.92 0.31 -0.31
38 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.92 0.35 -0.29
39 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.92 0.32 -0.33
40 AT1G29070 Ribosomal protein L34 0.92 0.3 -0.31
41 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.92 0.33 -0.33
42 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.92 0.31 -0.32
43 AT1G76450 Photosystem II reaction center PsbP family protein 0.91 0.3 -0.31
44 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.91 0.33 -0.3
45 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.91 0.32 -0.31
46 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.91 0.3 -0.31
47 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.91 0.31 -0.31
48 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.91 0.31 -0.31
49 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.91 0.32 -0.3
50 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.91 0.31 -0.32
51 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.29 -0.31
52 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.91 0.32 -0.32
53 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.91 0.35 -0.31
54 AT1G53520 Chalcone-flavanone isomerase family protein 0.91 0.3 -0.34
55 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.91 0.32 -0.29
56 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.32 -0.32
57 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.31 -0.32
58 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.91 0.31 -0.33
59 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.91 0.31 -0.34
60 AT5G52970 thylakoid lumen 15.0 kDa protein 0.91 0.31 -0.32
61 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.91 0.31 -0.3
62 AT1G55370 NDH-dependent cyclic electron flow 5 NDH-dependent cyclic electron flow
5		 0.9 0.32 -0.33
63 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.9 0.33 -0.3
64 AT4G01310 Ribosomal L5P family protein 0.9 0.33 -0.31
65 AT3G28460 methyltransferases 0.9 0.31 -0.3
66 AT5G06290 2-cysteine peroxiredoxin B 2-cysteine peroxiredoxin B, 2-CYS
PEROXIREDOXIN B		 0.9 0.31 -0.32
67 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.9 0.29 -0.31
68 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.9 0.32 -0.32
69 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.9 0.3 -0.33
70 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.9 0.32 -0.33
71 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.9 0.32 -0.33
72 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.9 0.32 -0.32
73 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.9 0.29 -0.3
74 AT4G26370 antitermination NusB domain-containing protein 0.9 0.32 -0.33
75 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.9 0.31 -0.33
76 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.9 0.31 -0.32
77 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.9 0.32 -0.33
78 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.9 0.33 -0.29
79 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.9 0.3 -0.3
80 AT3G20230 Ribosomal L18p/L5e family protein 0.9 0.33 -0.33
81 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.9 0.3 -0.33
82 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.9 0.31 -0.29
83 AT2G24090 Ribosomal protein L35 0.9 0.32 -0.32
84 AT4G15510 Photosystem II reaction center PsbP family protein 0.9 0.32 -0.3
85 AT2G18710 SECY homolog 1 SECY homolog 1 0.9 0.34 -0.32
86 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.31 -0.31
87 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.9 0.33 -0.3
88 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.9 0.31 -0.31
89 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.9 0.29 -0.31
90 AT1G06190 Rho termination factor 0.89 0.34 -0.35
91 AT4G34730 ribosome-binding factor A family protein 0.89 0.31 -0.33
92 AT4G34290 SWIB/MDM2 domain superfamily protein 0.89 0.33 -0.3
93 AT3G55040 glutathione transferase lambda 2 glutathione transferase lambda 2 0.89 0.31 -0.31
94 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.89 0.31 -0.33
95 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.89 0.28 -0.31
96 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.89 0.33 -0.31
97 AT5G52520 Class II aaRS and biotin synthetases superfamily protein OVULE ABORTION 6, PROLYL-TRNA
SYNTHETASE 1		 0.89 0.32 -0.32
98 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.89 0.31 -0.32
99 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.89 0.3 -0.31
100 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.89 0.31 -0.33
101 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.89 0.29 -0.33
102 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.89 0.31 -0.33
103 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.89 0.31 -0.33
104 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.89 0.34 -0.32
105 AT2G24060 Translation initiation factor 3 protein 0.89 0.31 -0.31
106 AT4G37510 Ribonuclease III family protein 0.89 0.31 -0.32
107 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.89 0.33 -0.34
108 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.89 0.31 -0.31
109 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.89 0.32 -0.31
110 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.89 0.32 -0.33
111 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.89 0.32 -0.32
112 AT5G54600 Translation protein SH3-like family protein 0.89 0.32 -0.32
113 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.29 -0.34
114 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.89 0.31 -0.3
115 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.89 0.32 -0.31
116 AT4G18360 Aldolase-type TIM barrel family protein -0.83 0.32 -0.3
117 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.81 0.29 -0.3
118 AT3G25290 Auxin-responsive family protein -0.81 0.3 -0.32
119 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.78 0.29 -0.29
120 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.77 0.32 -0.29
121 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 -0.77 0.33 -0.31
122 AT5G06750 Protein phosphatase 2C family protein -0.77 0.31 -0.32
123 AT5G18780 F-box/RNI-like superfamily protein -0.77 0.32 -0.33
124 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.75 0.31 -0.32
125 AT3G59700 lectin-receptor kinase lectin-receptor kinase,
lectin-receptor kinase,
LECTIN-RECEPTOR KINASE 1		 -0.74 0.33 -0.29
126 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.74 0.32 -0.32
127 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.74 0.31 -0.33
128 AT5G24090 chitinase A chitinase A, chitinase A -0.74 0.32 -0.32
129 AT3G57380 Glycosyltransferase family 61 protein -0.74 0.33 -0.32
130 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.73 0.31 -0.31
131 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.72 0.32 -0.31
132 AT3G26590 MATE efflux family protein -0.71 0.32 -0.33
133 AT5G49880 mitotic checkpoint family protein -0.71 0.32 -0.32
134 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.71 0.29 -0.33
135 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.71 0.3 -0.3
136 AT1G79690 nudix hydrolase homolog 3 nudix hydrolase homolog 3, nudix
hydrolase homolog 3		 -0.71 0.33 -0.29
137 AT3G16450 Mannose-binding lectin superfamily protein Jacalin-related lectin 33 -0.7 0.31 -0.33
138 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.7 0.3 -0.34
139 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.7 0.32 -0.32
140 AT4G29900 autoinhibited Ca(2+)-ATPase 10 autoinhibited Ca(2+)-ATPase 10,
ATACA10, COMPACT INFLORESCENCE 1		 -0.7 0.31 -0.31
141 AT2G22330 cytochrome P450, family 79, subfamily B, polypeptide 3 cytochrome P450, family 79,
subfamily B, polypeptide 3		 -0.7 0.31 -0.27
142 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein -0.69 0.3 -0.34
143 AT4G20110 VACUOLAR SORTING RECEPTOR 7 binding protein of 80 kDa 3;1,
VACUOLAR SORTING RECEPTOR 3;1,
VACUOLAR SORTING RECEPTOR 7		 -0.69 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
144 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.77 0.43 -0.43 C0051