AT2G28605 : -
Query Information
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AGICode AT2G28605
Description Photosystem II reaction center PsbP family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G28605 Photosystem II reaction center PsbP family protein 1 0.34 -0.32
2 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.94 0.33 -0.32
3 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.33 -0.31
4 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.92 0.31 -0.3
5 AT1G14345 NAD(P)-linked oxidoreductase superfamily protein 0.92 0.34 -0.33
6 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.92 0.32 -0.31
7 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14		 0.91 0.3 -0.33
8 AT3G01480 cyclophilin 38 ARABIDOPSIS CYCLOPHILIN 38,
cyclophilin 38		 0.91 0.3 -0.33
9 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.91 0.32 -0.32
10 AT1G49380 cytochrome c biogenesis protein family 0.91 0.32 -0.29
11 AT3G20230 Ribosomal L18p/L5e family protein 0.91 0.33 -0.29
12 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.9 0.33 -0.31
13 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.9 0.33 -0.32
14 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.9 0.31 -0.33
15 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.9 0.3 -0.33
16 AT3G29185 Domain of unknown function (DUF3598) 0.9 0.33 -0.33
17 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.9 0.3 -0.33
18 AT4G26370 antitermination NusB domain-containing protein 0.9 0.31 -0.31
19 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.9 0.31 -0.3
20 AT2G06520 photosystem II subunit X photosystem II subunit X 0.9 0.32 -0.31
21 AT5G52970 thylakoid lumen 15.0 kDa protein 0.9 0.32 -0.33
22 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.9 0.31 -0.33
23 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.89 0.3 -0.3
24 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.89 0.33 -0.3
25 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.89 0.31 -0.32
26 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.89 0.32 -0.31
27 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.89 0.33 -0.29
28 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.89 0.32 -0.3
29 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.89 0.34 -0.3
30 AT3G18680 Amino acid kinase family protein 0.89 0.31 -0.35
31 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.89 0.31 -0.32
32 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.89 0.34 -0.3
33 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.32 -0.32
34 AT2G18710 SECY homolog 1 SECY homolog 1 0.89 0.31 -0.31
35 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.31 -0.3
36 AT1G03600 photosystem II family protein PSB27 0.88 0.33 -0.29
37 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein AtPLR1, pyridoxal reductase 1 0.88 0.31 -0.34
38 AT3G09580 FAD/NAD(P)-binding oxidoreductase family protein 0.88 0.32 -0.31
39 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.88 0.32 -0.32
40 AT1G74070 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.88 0.31 -0.3
41 AT5G03940 chloroplast signal recognition particle 54 kDa subunit 54 CHLOROPLAST PROTEIN,
chloroplast signal recognition
particle 54 kDa subunit,
FIFTY-FOUR CHLOROPLAST HOMOLOGUE,
SIGNAL RECOGNITION PARTICLE 54 KDA
SUBUNIT CHLOROPLAST PROTEIN		 0.88 0.32 -0.31
42 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.88 0.31 -0.31
43 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.88 0.32 -0.32
44 AT1G14030 Rubisco methyltransferase family protein 0.88 0.31 -0.32
45 AT1G49975 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I,
chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Photosystem I reaction centre subunit N
(InterPro:IPR008796); Has 34 Blast hits to 34 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.87 0.31 -0.3
46 AT3G28040 Leucine-rich receptor-like protein kinase family protein 0.87 0.31 -0.3
47 AT3G02450 cell division protein ftsH, putative 0.87 0.3 -0.32
48 AT1G31920 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.32 -0.31
49 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.87 0.32 -0.31
50 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 0.87 0.31 -0.3
51 AT3G14330 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.32 -0.29
52 AT4G26060 Ribosomal protein L18ae family -0.87 0.32 -0.33
53 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.87 0.33 -0.32
54 AT1G64355 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3593 (InterPro:IPR021995);
Has 301 Blast hits to 301 proteins in 96 species: Archae -
0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 0.87 0.31 -0.33
55 AT3G25805 unknown protein; Has 98 Blast hits to 98 proteins in 45
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.87 0.34 -0.31
56 AT5G63050 embryo defective 2759 embryo defective 2759 0.87 0.31 -0.32
57 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.87 0.3 -0.32
58 AT2G40760 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.86 0.32 -0.32
59 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 -0.86 0.31 -0.32
60 AT5G55740 Tetratricopeptide repeat (TPR)-like superfamily protein chlororespiratory reduction 21 0.86 0.32 -0.32
61 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.86 0.31 -0.32
62 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.86 0.32 -0.29
63 AT1G54500 Rubredoxin-like superfamily protein 0.86 0.32 -0.31
64 AT5G66470 RNA binding;GTP binding 0.86 0.34 -0.31
65 AT5G62840 Phosphoglycerate mutase family protein 0.86 0.31 -0.31
66 AT5G02710 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240
proteins in 73 species: Archae - 10; Bacteria - 110;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 95 (source: NCBI BLink).		 0.86 0.33 -0.32
67 AT2G37450 nodulin MtN21 /EamA-like transporter family protein 0.86 0.33 -0.31
68 AT4G14870 secE/sec61-gamma protein transport protein SECE1 0.86 0.33 -0.35
69 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.86 0.31 -0.31
70 AT1G17200 Uncharacterised protein family (UPF0497) 0.86 0.33 -0.31
71 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.86 0.3 -0.3
72 AT1G51100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 26
Blast hits to 26 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.3 -0.31
73 AT5G15390 tRNA/rRNA methyltransferase (SpoU) family protein 0.86 0.3 -0.31
74 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.86 0.3 -0.32
75 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.85 0.34 -0.33
76 AT2G30140 UDP-Glycosyltransferase superfamily protein -0.83 0.31 -0.34
77 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.83 0.29 -0.31
78 AT5G25930 Protein kinase family protein with leucine-rich repeat
domain		 -0.83 0.3 -0.3
79 AT2G29990 alternative NAD(P)H dehydrogenase 2 alternative NAD(P)H dehydrogenase
2		 -0.82 0.32 -0.34
80 AT3G15180 ARM repeat superfamily protein -0.81 0.31 -0.31
81 AT3G46660 UDP-glucosyl transferase 76E12 UDP-glucosyl transferase 76E12 -0.81 0.34 -0.32
82 AT4G05020 NAD(P)H dehydrogenase B2 NAD(P)H dehydrogenase B2 -0.81 0.31 -0.34
83 AT4G02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein -0.81 0.33 -0.34
84 AT3G12740 ALA-interacting subunit 1 ALA-interacting subunit 1 -0.8 0.3 -0.31
85 AT1G76520 Auxin efflux carrier family protein -0.79 0.33 -0.31
86 AT2G17500 Auxin efflux carrier family protein -0.79 0.32 -0.32
87 AT4G31860 Protein phosphatase 2C family protein -0.79 0.3 -0.3
88 AT3G22850 Aluminium induced protein with YGL and LRDR motifs -0.79 0.33 -0.3
89 AT4G22530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.79 0.3 -0.31
90 AT5G38710 Methylenetetrahydrofolate reductase family protein -0.79 0.32 -0.31
91 AT1G72900 Toll-Interleukin-Resistance (TIR) domain-containing protein -0.79 0.32 -0.3
92 AT5G54860 Major facilitator superfamily protein -0.79 0.31 -0.32
93 AT1G77920 bZIP transcription factor family protein -0.78 0.31 -0.3
94 AT1G31130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in
29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi -
0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 -0.78 0.28 -0.34
95 AT5G05110 Cystatin/monellin family protein -0.78 0.33 -0.3
96 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.78 0.32 -0.33
97 AT4G20830 FAD-binding Berberine family protein -0.78 0.34 -0.3
98 AT2G37150 RING/U-box superfamily protein -0.78 0.32 -0.34
99 AT5G26340 Major facilitator superfamily protein SUGAR TRANSPORT PROTEIN 13, MSS1,
SUGAR TRANSPORT PROTEIN 13		 -0.78 0.3 -0.3
100 AT5G20230 blue-copper-binding protein blue-copper-binding protein, BLUE
COPPER BINDING PROTEIN,
blue-copper-binding protein,
SENESCENCE ASSOCIATED GENE 14		 -0.78 0.29 -0.33
101 AT3G48520 cytochrome P450, family 94, subfamily B, polypeptide 3 cytochrome P450, family 94,
subfamily B, polypeptide 3		 -0.78 0.31 -0.33
102 AT2G26230 uricase / urate oxidase / nodulin 35, putative -0.77 0.32 -0.3
103 AT1G32960 Subtilase family protein ATSBT3.3, SBT3.3 -0.77 0.29 -0.32
104 AT3G24982 receptor like protein 40 receptor like protein 40, receptor
like protein 40		 -0.77 0.32 -0.31
105 AT1G66760 MATE efflux family protein -0.77 0.33 -0.31
106 AT2G23450 Protein kinase superfamily protein -0.77 0.31 -0.3
107 AT3G25010 receptor like protein 41 receptor like protein 41, receptor
like protein 41		 -0.77 0.31 -0.33
108 AT5G13320 Auxin-responsive GH3 family protein GH3-LIKE DEFENSE GENE 1, GRETCHEN
HAGEN 3.12, AVRPPHB SUSCEPTIBLE 3,
HOPW1-1-INTERACTING 3		 -0.77 0.33 -0.31
109 AT2G44500 O-fucosyltransferase family protein -0.77 0.31 -0.31
110 AT5G06750 Protein phosphatase 2C family protein -0.77 0.31 -0.29
111 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.76 0.3 -0.32
112 AT1G19020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits
to 88 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.76 0.3 -0.34
113 AT3G26600 armadillo repeat only 4 armadillo repeat only 4 -0.76 0.33 -0.33
114 AT5G63880 SNF7 family protein VPS20.1 -0.76 0.3 -0.32
115 AT3G62770 Transducin/WD40 repeat-like superfamily protein autophagy 18a, autophagy 18a -0.76 0.31 -0.31
116 AT3G50260 cooperatively regulated by ethylene and jasmonate 1 ATERF#011, cooperatively regulated
by ethylene and jasmonate 1, DREB
AND EAR MOTIF PROTEIN 1		 -0.76 0.31 -0.29
117 AT3G15500 NAC domain containing protein 3 NAC domain containing protein 55,
NAC domain containing protein 3,
NAC domain containing protein 55,
NAC domain containing protein 3		 -0.76 0.32 -0.3
118 AT1G17620 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.76 0.33 -0.29
119 AT2G02370 SNARE associated Golgi protein family -0.76 0.31 -0.31
120 AT5G26030 ferrochelatase 1 ATFC-I, FC-I, ferrochelatase 1 -0.75 0.29 -0.33
121 AT3G44190 FAD/NAD(P)-binding oxidoreductase family protein -0.75 0.3 -0.31
122 AT1G28190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits
to 162 proteins in 36 species: Archae - 0; Bacteria - 2;
Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other
Eukaryotes - 20 (source: NCBI BLink).		 -0.75 0.32 -0.33
123 AT3G11840 plant U-box 24 plant U-box 24 -0.75 0.31 -0.33
124 AT3G07780 Protein of unknown function (DUF1423) OBERON1 -0.75 0.34 -0.32
125 AT4G31550 WRKY DNA-binding protein 11 ATWRKY11, WRKY DNA-binding protein
11		 -0.75 0.29 -0.3
126 AT5G17650 glycine/proline-rich protein -0.75 0.33 -0.34
127 AT1G15520 pleiotropic drug resistance 12 ATP-binding cassette G40,
Arabidopsis thaliana ATP-binding
cassette G40, PLEIOTROPIC DRUG
RESISTANCE 12, pleiotropic drug
resistance 12		 -0.75 0.32 -0.31
128 AT1G33030 O-methyltransferase family protein -0.75 0.32 -0.3
129 AT3G22370 alternative oxidase 1A alternative oxidase 1A, ATAOX1A,
AtHSR3, hyper-sensitivity-related
3		 -0.74 0.32 -0.32
130 AT3G54150 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.74 0.34 -0.32
131 AT3G02360 6-phosphogluconate dehydrogenase family protein -0.74 0.33 -0.32
132 AT3G03610 ELMO/CED-12 family protein -0.74 0.31 -0.3
133 AT3G48850 phosphate transporter 3;2 phosphate transporter 3;2 -0.74 0.33 -0.34
134 AT4G33780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40
Blast hits to 40 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.31 -0.31
135 AT1G72520 PLAT/LH2 domain-containing lipoxygenase family protein Arabidopsis thaliana lipoxygenase
4, lipoxygenase 4		 -0.74 0.3 -0.33
136 AT1G28480 Thioredoxin superfamily protein GRX480, roxy19 -0.74 0.33 -0.28
137 AT3G46930 Protein kinase superfamily protein -0.74 0.33 -0.29
138 AT1G28050 B-box type zinc finger protein with CCT domain -0.74 0.35 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.75 0.47 -0.47 C0051