AT2G04025 : root meristem growth factor 3
Query Information
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AGICode AT2G04025
Description Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G04025 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 3 1 0.3 -0.32
2 AT3G25930 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.87 0.34 -0.33
3 AT4G13580 Disease resistance-responsive (dirigent-like protein)
family protein		 0.8 0.31 -0.32
4 AT2G27000 cytochrome P450, family 705, subfamily A, polypeptide 8 cytochrome P450, family 705,
subfamily A, polypeptide 8		 0.79 0.32 -0.33
5 AT2G17080 Arabidopsis protein of unknown function (DUF241) 0.79 0.32 -0.31
6 AT3G26550 Cysteine/Histidine-rich C1 domain family protein 0.78 0.36 -0.33
7 AT2G32610 cellulose synthase-like B1 cellulose synthase-like B1,
CELLULOSE SYNTHASE LIKE B1,
CELLULOSE SYNTHASE LIKE B1,
cellulose synthase-like B1		 0.78 0.32 -0.31
8 AT1G22440 Zinc-binding alcohol dehydrogenase family protein 0.77 0.32 -0.31
9 AT5G42180 Peroxidase superfamily protein peroxidase 64 0.76 0.3 -0.31
10 AT5G14150 Protein of unknown function, DUF642 0.76 0.34 -0.32
11 AT4G28890 RING/U-box superfamily protein 0.75 0.33 -0.32
12 AT1G77330 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.75 0.32 -0.32
13 AT1G50580 UDP-Glycosyltransferase superfamily protein 0.75 0.32 -0.32
14 AT5G48940 Leucine-rich repeat transmembrane protein kinase family
protein		 0.74 0.32 -0.32
15 AT5G50300 Xanthine/uracil permease family protein ARABIDOPSIS THALIANA AZA-GUANINE
RESISTANT2, AZA-GUANINE RESISTANT2		 0.74 0.31 -0.3
16 AT1G48510 Surfeit locus 1 cytochrome c oxidase biogenesis protein 0.74 0.33 -0.33
17 AT4G12080 AT-hook motif nuclear-localized protein 1 AT-hook motif nuclear-localized
protein 1, ATAHL1		 0.74 0.3 -0.32
18 AT3G24240 Leucine-rich repeat receptor-like protein kinase family
protein		 0.73 0.32 -0.32
19 AT3G04570 AT-hook motif nuclear-localized protein 19 AT-hook motif nuclear-localized
protein 19		 0.73 0.31 -0.34
20 AT3G50230 Leucine-rich repeat protein kinase family protein 0.73 0.3 -0.31
21 AT5G06800 myb-like HTH transcriptional regulator family protein 0.73 0.31 -0.32
22 AT2G43480 Peroxidase superfamily protein 0.73 0.31 -0.29
23 AT2G23050 Phototropic-responsive NPH3 family protein MAB4/ENP/NPY1-LIKE 4, NAKED PINS
IN YUC MUTANTS 4		 0.72 0.33 -0.32
24 AT5G19540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 -0.72 0.31 -0.32
25 AT3G01070 early nodulin-like protein 16 AtENODL16, early nodulin-like
protein 16		 0.72 0.33 -0.3
26 AT1G15210 pleiotropic drug resistance 7 ATP-binding cassette G35,
PLEIOTROPIC DRUG RESISTANCE 7,
pleiotropic drug resistance 7		 0.72 0.31 -0.31
27 AT5G57980 RNA polymerase II fifth largest subunit, C RNA polymerase II fifth largest
subunit, C		 0.72 0.32 -0.34
28 AT2G42430 lateral organ boundaries-domain 16 ASYMMETRIC LEAVES2-LIKE 18,
lateral organ boundaries-domain 16		 0.72 0.32 -0.3
29 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 0.71 0.32 -0.31
30 AT5G40510 Sucrase/ferredoxin-like family protein 0.71 0.31 -0.33
31 AT5G42630 Homeodomain-like superfamily protein ABERRANT TESTA SHAPE, KANADI 4 0.7 0.33 -0.33
32 AT1G09460 Carbohydrate-binding X8 domain superfamily protein 0.7 0.3 -0.32
33 AT5G57090 Auxin efflux carrier family protein AGRAVITROPIC ROOT, AGRAVITROPIC
ROOT 1, ARABIDOPSIS THALIANA
PIN-FORMED 2, ETHYLENE INSENSITIVE
ROOT 1, MM31, PIN-FORMED 2, WAVY
ROOTS 6		 0.7 0.31 -0.3
34 AT3G16440 myrosinase-binding protein-like protein-300B myrosinase-binding protein-like
protein-300B, maternal effect
embryo arrest 36,
myrosinase-binding protein-like
protein-300B		 0.7 0.29 -0.32
35 AT5G40730 arabinogalactan protein 24 arabinogalactan protein 24,
ARABIDOPSIS THALIANA
ARABINOGALACTAN PROTEIN 24		 0.7 0.31 -0.3
36 AT3G11550 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 2		 0.7 0.33 -0.32
37 AT3G29780 ralf-like 27 ralf-like 27 0.69 0.33 -0.29
38 AT2G20875 epidermal patterning factor 1 EPIDERMAL PATTERNING FACTOR 1 -0.69 0.31 -0.32
39 AT4G13235 embryo sac development arrest 21 embryo sac development arrest 21 0.69 0.34 -0.33
40 AT2G29750 UDP-glucosyl transferase 71C1 UDP-glucosyl transferase 71C1 0.69 0.32 -0.3
41 AT5G59520 ZRT/IRT-like protein 2 ZRT/IRT-like protein 2 0.68 0.32 -0.33
42 AT2G14960 Auxin-responsive GH3 family protein GH3.1 0.68 0.31 -0.31
43 AT4G01940 NFU domain protein 1 AtCNFU1, NFU domain protein 1 -0.68 0.32 -0.33
44 AT5G51500 Plant invertase/pectin methylesterase inhibitor superfamily 0.68 0.31 -0.32
45 AT3G27150 Galactose oxidase/kelch repeat superfamily protein 0.68 0.33 -0.32
46 AT3G06120 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 MUTE -0.68 0.32 -0.32
47 AT1G72850 Disease resistance protein (TIR-NBS class) 0.68 0.33 -0.33
48 AT3G10570 cytochrome P450, family 77, subfamily A, polypeptide 6 cytochrome P450, family 77,
subfamily A, polypeptide 6		 -0.68 0.33 -0.33
49 AT1G30750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: hypocotyl, root, pollen
tube; Has 1177 Blast hits to 607 proteins in 189 species:
Archae - 0; Bacteria - 312; Metazoa - 195; Fungi - 185;
Plants - 27; Viruses - 16; Other Eukaryotes - 442 (source:
NCBI BLink).		 0.68 0.32 -0.33
50 AT2G16570 GLN phosphoribosyl pyrophosphate amidotransferase 1 GLN phosphoribosyl pyrophosphate
amidotransferase 1, ATASE, GLN
phosphoribosyl pyrophosphate
amidotransferase 1		 0.68 0.31 -0.31
51 AT2G28670 Disease resistance-responsive (dirigent-like protein)
family protein		 ENHANCED SUBERIN 1 0.68 0.33 -0.31
52 AT4G31470 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.67 0.33 -0.32
53 AT5G52170 homeodomain GLABROUS 7 homeodomain GLABROUS 7 0.67 0.31 -0.32
54 AT5G66390 Peroxidase superfamily protein 0.67 0.3 -0.31
55 AT1G01750 actin depolymerizing factor 11 actin depolymerizing factor 11 0.67 0.31 -0.35
56 AT1G21310 extensin 3 extensin 3, extensin 3,
ROOT-SHOOT-HYPOCOTYL DEFECTIVE		 0.67 0.34 -0.34
57 AT5G17820 Peroxidase superfamily protein 0.67 0.32 -0.28
58 AT3G15300 VQ motif-containing protein 0.67 0.34 -0.3
59 AT4G34600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane
system; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: M germinated pollen stage, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.32 -0.31
60 AT2G25980 Mannose-binding lectin superfamily protein 0.67 0.32 -0.34
61 AT1G69390 homologue of bacterial MinE 1 accumulation and replication of
chloroplasts 12, homologue of
bacterial MinE 1, homologue of
bacterial MinE 1		 -0.66 0.33 -0.32
62 AT1G80240 Protein of unknown function, DUF642 0.66 0.32 -0.31
63 AT5G51670 Protein of unknown function (DUF668) 0.66 0.32 -0.3
64 AT5G54230 myb domain protein 49 myb domain protein 49, myb domain
protein 49		 0.66 0.3 -0.31
65 AT2G36250 Tubulin/FtsZ family protein ATFTSZ2-1, FTSZ2-1 -0.66 0.34 -0.3
66 AT2G42130 Plastid-lipid associated protein PAP / fibrillin family
protein		 -0.66 0.29 -0.28
67 AT4G14910 HISTIDINE BIOSYNTHESIS 5B HISTIDINE BIOSYNTHESIS 5B -0.65 0.31 -0.32
68 AT1G62800 aspartate aminotransferase 4 aspartate aminotransferase 4 0.65 0.33 -0.31
69 AT5G03900 Iron-sulphur cluster biosynthesis family protein -0.65 0.33 -0.32
70 AT5G63930 Leucine-rich repeat protein kinase family protein 0.65 0.3 -0.32
71 AT3G06483 pyruvate dehydrogenase kinase ATPDHK, pyruvate dehydrogenase
kinase		 -0.65 0.31 -0.31
72 AT2G04480 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits
to 38 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.65 0.3 -0.32
73 AT1G08590 Leucine-rich receptor-like protein kinase family protein 0.65 0.33 -0.32
74 AT2G32620 cellulose synthase-like B cellulose synthase-like B,
CELLULOSE SYNTHASE LIKE B2,
CELLULOSE SYNTHASE LIKE B2,
cellulose synthase-like B		 0.65 0.3 -0.33
75 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15		 0.65 0.29 -0.33
76 AT4G25370 Double Clp-N motif protein -0.65 0.31 -0.33
77 AT1G44970 Peroxidase superfamily protein 0.64 0.31 -0.31
78 AT2G37920 copper ion transmembrane transporters embryo defective 1513 -0.64 0.34 -0.32
79 AT5G06060 NAD(P)-binding Rossmann-fold superfamily protein -0.64 0.33 -0.31
80 AT2G38270 CAX-interacting protein 2 GLUTAREDOXIN, CAX-interacting
protein 2		 -0.64 0.31 -0.3
81 AT2G31900 myosin-like protein XIF MYOSIN 5, MYOSIN XI F, myosin-like
protein XIF		 0.64 0.32 -0.31
82 AT1G16190 Rad23 UV excision repair protein family RADIATION SENSITIVE23A 0.64 0.33 -0.31
83 AT3G08770 lipid transfer protein 6 lipid transfer protein 6 -0.64 0.34 -0.31
84 AT2G27510 ferredoxin 3 ferredoxin 3, ferredoxin 3 0.64 0.32 -0.32
85 AT1G67280 Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily protein		 -0.64 0.3 -0.33
86 AT4G20210 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.64 0.31 -0.32
87 AT5G13910 Integrase-type DNA-binding superfamily protein LEAFY PETIOLE 0.63 0.3 -0.32
88 AT2G04032 zinc transporter 7 precursor zinc transporter 7 precursor -0.63 0.31 -0.33
89 AT1G65450 HXXXD-type acyl-transferase family protein -0.63 0.33 -0.32
90 AT1G30990 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.63 0.32 -0.31
91 AT4G08780 Peroxidase superfamily protein 0.63 0.31 -0.31
92 AT4G33100 CONTAINS InterPro DOMAIN/s: Mitochondrial
distribution/morphology family 35/apoptosis
(InterPro:IPR007918); Has 214 Blast hits to 214 proteins in
102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi
- 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink).		 0.63 0.32 -0.32
93 AT1G51640 exocyst subunit exo70 family protein G2 exocyst subunit exo70 family
protein G2, exocyst subunit exo70
family protein G2		 0.63 0.31 -0.32
94 AT3G59220 pirin ATPIRIN1, pirin, PRN1 0.63 0.34 -0.3
95 AT1G72840 Disease resistance protein (TIR-NBS-LRR class) 0.63 0.34 -0.32
96 AT1G01640 BTB/POZ domain-containing protein 0.63 0.29 -0.33
97 AT1G03840 C2H2 and C2HC zinc fingers superfamily protein Magpie 0.63 0.31 -0.33
98 AT1G74520 HVA22 homologue A HVA22 homologue A, HVA22 homologue
A		 -0.63 0.31 -0.35
99 AT5G45210 Disease resistance protein (TIR-NBS-LRR class) family 0.63 0.32 -0.31
100 AT5G23940 HXXXD-type acyl-transferase family protein DEFECTIVE IN CUTICULAR RIDGES,
EMBRYO DEFECTIVE 3009, PERMEABLE
LEAVES3		 -0.63 0.31 -0.3
101 AT1G27740 root hair defective 6-like 4 root hair defective 6-like 4 0.63 0.31 -0.31
102 AT1G03010 Phototropic-responsive NPH3 family protein 0.63 0.32 -0.31
103 AT4G22510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: shoot apex, leaf; Has 2 Blast
hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.32 -0.31
104 AT5G41460 Protein of unknown function (DUF604) -0.62 0.33 -0.31
105 AT5G04440 Protein of unknown function (DUF1997) -0.62 0.3 -0.31
106 AT3G61840 Protein of unknown function (DUF688) -0.61 0.32 -0.33
107 AT2G40880 cystatin A cystatin A, cystatin A, FL3-27 -0.61 0.32 -0.3
108 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 -0.61 0.31 -0.31
109 AT3G59010 pectin methylesterase 61 pectin methylesterase 61 -0.6 0.31 -0.32
110 AT5G49230 Drought-responsive family protein HYPERSENSITIVE TO RED AND BLUE -0.6 0.28 -0.29
111 AT1G63710 cytochrome P450, family 86, subfamily A, polypeptide 7 cytochrome P450, family 86,
subfamily A, polypeptide 7		 -0.59 0.29 -0.34
112 AT1G27070 5'-AMP-activated protein kinase-related -0.59 0.3 -0.3
113 AT1G06100 Fatty acid desaturase family protein -0.59 0.29 -0.31
114 AT4G05000 Vacuolar protein sorting-associated protein VPS28 family
protein		 vacuolar protein
sorting-associated protein 28
homolog 1, VPS28-2		 -0.59 0.31 -0.32
115 AT1G73360 homeodomain GLABROUS 11 HOMEODOMAIN GLABROUS 11, ENHANCED
DROUGHT TOLERANCE 1, homeodomain
GLABROUS 11		 -0.59 0.32 -0.32
116 AT1G79970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF581)
(TAIR:AT2G25690.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.58 0.32 -0.32
117 AT5G45170 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.58 0.32 -0.33
118 AT3G51690 PIF1 helicase -0.58 0.31 -0.3
119 AT5G64640 Plant invertase/pectin methylesterase inhibitor superfamily -0.57 0.3 -0.3
120 AT3G43060 transposable element gene -0.57 0.3 -0.31
121 AT1G12570 Glucose-methanol-choline (GMC) oxidoreductase family
protein		 -0.57 0.3 -0.31
122 AT5G22600 FBD / Leucine Rich Repeat domains containing protein -0.57 0.33 -0.3