AT1G59990 : EMBRYO DEFECTIVE 3108
Query Information
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AGICode AT1G59990
Description DEA(D/H)-box RNA helicase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G59990 DEA(D/H)-box RNA helicase family protein EMBRYO DEFECTIVE 3108, RNA
helicase 22		 1 0.35 -0.31
2 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 0.89 0.33 -0.31
3 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 0.84 0.31 -0.31
4 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.84 0.32 -0.33
5 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1		 0.83 0.35 -0.31
6 AT1G48570 zinc finger (Ran-binding) family protein 0.83 0.32 -0.33
7 AT4G31210 DNA topoisomerase, type IA, core 0.83 0.33 -0.31
8 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 CLUMPED CHLOROPLASTS 1, Phox2 0.83 0.31 -0.32
9 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.81 0.32 -0.32
10 AT2G04030 Chaperone protein htpG family protein HEAT SHOCK PROTEIN 90.5, CR88,
EMBRYO DEFECTIVE 1956, HEAT SHOCK
PROTEIN 88.1, HEAT SHOCK PROTEIN
90.5		 0.8 0.31 -0.33
11 AT3G10690 DNA GYRASE A DNA GYRASE A 0.8 0.34 -0.31
12 AT5G58740 HSP20-like chaperones superfamily protein -0.8 0.31 -0.32
13 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.79 0.31 -0.32
14 AT1G20230 Pentatricopeptide repeat (PPR) superfamily protein 0.79 0.32 -0.3
15 AT5G55280 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 ARABIDOPSIS THALIANA HOMOLOG OF
BACTERIAL CYTOKINESIS Z-RING
PROTEIN FTSZ 1-1, CHLOROPLAST
FTSZ, homolog of bacterial
cytokinesis Z-ring protein FTSZ
1-1		 0.79 0.31 -0.32
16 AT3G10250 Plant protein 1589 of unknown function -0.78 0.31 -0.3
17 AT4G18750 Pentatricopeptide repeat (PPR) superfamily protein DEFECTIVELY ORGANIZED TRIBUTARIES
4		 0.78 0.33 -0.31
18 AT1G69950 transposable element gene 0.78 0.34 -0.31
19 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 0.78 0.32 -0.31
20 AT3G21110 purin 7 ATPURC, purin 7, PURIN C 0.77 0.35 -0.3
21 AT1G09830 Glycinamide ribonucleotide (GAR) synthetase 0.77 0.33 -0.32
22 AT4G10760 mRNAadenosine methylase EMBRYO DEFECTIVE 1706,
mRNAadenosine methylase		 0.76 0.33 -0.31
23 AT5G57900 SKP1 interacting partner 1 SKP1 interacting partner 1 -0.76 0.33 -0.3
24 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III		 0.76 0.32 -0.33
25 AT1G72550 tRNA synthetase beta subunit family protein 0.76 0.33 -0.31
26 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE 0.75 0.34 -0.3
27 AT5G18820 TCP-1/cpn60 chaperonin family protein chaperonin-60alpha2, embryo
defective 3007		 0.74 0.32 -0.32
28 AT2G17820 histidine kinase 1 AHK1, histidine kinase 1,
histidine kinase 1		 0.74 0.33 -0.3
29 AT4G20980 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.74 0.34 -0.3
30 AT5G59600 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.31 -0.31
31 AT3G47520 malate dehydrogenase malate dehydrogenase, plastidic
NAD-dependent malate dehydrogenase		 0.73 0.28 -0.3
32 AT1G23280 MAK16 protein-related 0.73 0.31 -0.3
33 AT4G38740 rotamase CYP 1 rotamase CYP 1 -0.73 0.31 -0.33
34 AT5G58370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.73 0.33 -0.31
35 AT3G20440 Alpha amylase family protein BRANCHING ENZYME 1, EMBRYO
DEFECTIVE 2729		 0.73 0.32 -0.32
36 AT4G16700 phosphatidylserine decarboxylase 1 phosphatidylserine decarboxylase 1 0.73 0.31 -0.31
37 AT4G39530 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.32 -0.31
38 AT1G72320 pumilio 23 pumilio 23, pumilio 23 0.73 0.33 -0.33
39 AT3G14900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: embryo development; LOCATED IN: chloroplast;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13
growth stages; Has 17135 Blast hits to 10204 proteins in
644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536;
Fungi - 2506; Plants - 1043; Viruses - 361; Other
Eukaryotes - 5958 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3120 0.73 0.32 -0.33
40 AT2G35040 AICARFT/IMPCHase bienzyme family protein 0.73 0.29 -0.32
41 AT4G38010 Pentatricopeptide repeat (PPR-like) superfamily protein 0.72 0.3 -0.33
42 AT1G45110 Tetrapyrrole (Corrin/Porphyrin) Methylases 0.72 0.31 -0.33
43 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 0.72 0.31 -0.28
44 AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative 0.72 0.32 -0.32
45 AT3G14120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Nuclear pore protein 84/107
(InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins
in 612 species: Archae - 19; Bacteria - 730; Metazoa -
2186; Fungi - 823; Plants - 382; Viruses - 37; Other
Eukaryotes - 1222 (source: NCBI BLink).		 0.72 0.33 -0.28
46 AT1G79080 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.33 -0.32
47 AT2G26200 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.72 0.31 -0.3
48 AT1G09660 RNA-binding KH domain-containing protein 0.71 0.32 -0.3
49 AT5G16620 hydroxyproline-rich glycoprotein family protein translocon at the inner envelope
membrane of chloroplasts 40,
pigment defective embryo 120,
translocon at the inner envelope
membrane of chloroplasts 40		 0.71 0.3 -0.29
50 AT1G48650 DEA(D/H)-box RNA helicase family protein 0.71 0.29 -0.33
51 AT2G24040 Low temperature and salt responsive protein family -0.71 0.3 -0.29
52 AT5G49910 chloroplast heat shock protein 70-2 chloroplast heat shock protein
70-2, HEAT SHOCK PROTEIN 70-7		 0.71 0.32 -0.3
53 AT3G54390 sequence-specific DNA binding transcription factors -0.71 0.32 -0.33
54 AT5G13650 elongation factor family protein SUPPRESSOR OF VARIEGATION 3 0.71 0.28 -0.32
55 AT5G63290 Radical SAM superfamily protein 0.71 0.32 -0.33
56 AT4G13650 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.33 -0.29
57 AT1G04900 Protein of unknown function (DUF185) 0.7 0.32 -0.32
58 AT4G19610 nucleotide binding;nucleic acid binding;RNA binding 0.7 0.31 -0.3
59 AT4G37170 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.34 -0.3
60 AT5G11890 FUNCTIONS IN: molecular_function unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: Late embryogenesis abundant
(LEA) hydroxyproline-rich glycoprotein family
(TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 EMBRYO DEFECTIVE 3135 0.7 0.3 -0.32
61 AT2G16400 BEL1-like homeodomain 7 BEL1-like homeodomain 7 0.7 0.29 -0.32
62 AT1G18070 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.7 0.31 -0.33
63 AT2G28050 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.29 -0.33
64 AT2G32510 mitogen-activated protein kinase kinase kinase 17 mitogen-activated protein kinase
kinase kinase 17		 -0.7 0.33 -0.32
65 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein -0.69 0.33 -0.3
66 AT5G05230 RING/U-box superfamily protein -0.68 0.32 -0.32
67 AT2G15230 lipase 1 lipase 1, lipase 1 -0.66 0.31 -0.32
68 AT5G02420 unknown protein; Has 90 Blast hits to 90 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.3 -0.3
69 AT3G13620 Amino acid permease family protein -0.62 0.29 -0.33
70 AT5G23640 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.61 0.32 -0.32
71 AT1G13880 ELM2 domain-containing protein -0.61 0.33 -0.3
72 AT2G34470 urease accessory protein G PSKF109, urease accessory protein
G		 -0.61 0.33 -0.32
73 AT5G23460 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.33 -0.3