AT2G34640 : HEMERA
Query Information
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AGICode AT2G34640
Description plastid transcriptionally active 12
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 1 0.32 -0.3
2 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.94 0.3 -0.31
3 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.93 0.29 -0.3
4 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.93 0.3 -0.32
5 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.93 0.29 -0.3
6 AT1G14030 Rubisco methyltransferase family protein 0.93 0.32 -0.28
7 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.92 0.32 -0.3
8 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.92 0.33 -0.3
9 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.92 0.33 -0.32
10 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.92 0.31 -0.35
11 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.92 0.31 -0.31
12 AT4G17740 Peptidase S41 family protein 0.91 0.3 -0.31
13 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 0.91 0.3 -0.3
14 AT5G03940 chloroplast signal recognition particle 54 kDa subunit 54 CHLOROPLAST PROTEIN,
chloroplast signal recognition
particle 54 kDa subunit,
FIFTY-FOUR CHLOROPLAST HOMOLOGUE,
SIGNAL RECOGNITION PARTICLE 54 KDA
SUBUNIT CHLOROPLAST PROTEIN		 0.91 0.32 -0.33
15 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.91 0.33 -0.3
16 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.91 0.33 -0.32
17 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.32 -0.32
18 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.9 0.33 -0.33
19 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.9 0.32 -0.29
20 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.9 0.32 -0.31
21 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.9 0.3 -0.31
22 AT4G34290 SWIB/MDM2 domain superfamily protein 0.89 0.31 -0.31
23 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.89 0.31 -0.28
24 AT2G28605 Photosystem II reaction center PsbP family protein 0.89 0.31 -0.29
25 AT5G39210 chlororespiratory reduction 7 CHLORORESPIRATORY REDUCTION 7 0.89 0.31 -0.35
26 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.89 0.29 -0.32
27 AT4G26370 antitermination NusB domain-containing protein 0.89 0.33 -0.3
28 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.89 0.32 -0.31
29 AT1G49380 cytochrome c biogenesis protein family 0.89 0.3 -0.31
30 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.89 0.28 -0.33
31 AT2G18710 SECY homolog 1 SECY homolog 1 0.89 0.31 -0.3
32 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.88 0.32 -0.33
33 AT5G55740 Tetratricopeptide repeat (TPR)-like superfamily protein chlororespiratory reduction 21 0.88 0.29 -0.31
34 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.88 0.31 -0.32
35 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.88 0.31 -0.3
36 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.88 0.3 -0.31
37 AT1G78180 Mitochondrial substrate carrier family protein 0.88 0.32 -0.32
38 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.88 0.32 -0.31
39 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.88 0.32 -0.31
40 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.88 0.31 -0.32
41 AT3G29185 Domain of unknown function (DUF3598) 0.88 0.29 -0.33
42 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.88 0.31 -0.29
43 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.88 0.31 -0.31
44 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.88 0.33 -0.3
45 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.32 -0.33
46 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.88 0.33 -0.31
47 AT5G52970 thylakoid lumen 15.0 kDa protein 0.88 0.31 -0.34
48 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.88 0.31 -0.3
49 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.87 0.3 -0.33
50 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.87 0.32 -0.33
51 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.87 0.32 -0.31
52 AT3G55330 PsbP-like protein 1 PsbP-like protein 1 0.87 0.31 -0.31
53 AT1G10522 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.87 0.32 -0.29
54 AT3G51870 Mitochondrial substrate carrier family protein 0.87 0.32 -0.32
55 AT3G18680 Amino acid kinase family protein 0.87 0.29 -0.33
56 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.87 0.34 -0.31
57 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.87 0.35 -0.31
58 AT2G41980 Protein with RING/U-box and TRAF-like domains 0.87 0.31 -0.3
59 AT5G63050 embryo defective 2759 embryo defective 2759 0.87 0.32 -0.31
60 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.87 0.31 -0.31
61 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A 0.87 0.31 -0.31
62 AT1G29070 Ribosomal protein L34 0.87 0.32 -0.31
63 AT1G60990 Glycine cleavage T-protein family 0.87 0.29 -0.3
64 AT5G66470 RNA binding;GTP binding 0.86 0.31 -0.32
65 AT4G15110 cytochrome P450, family 97, subfamily B, polypeptide 3 cytochrome P450, family 97,
subfamily B, polypeptide 3		 0.86 0.31 -0.3
66 AT3G14330 Tetratricopeptide repeat (TPR)-like superfamily protein 0.86 0.31 -0.3
67 AT1G17200 Uncharacterised protein family (UPF0497) 0.86 0.28 -0.3
68 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.86 0.32 -0.29
69 AT3G21300 RNA methyltransferase family protein 0.86 0.32 -0.31
70 AT4G32570 TIFY domain protein 8 TIFY domain protein 8 0.86 0.31 -0.31
71 AT2G17240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G24506.1); Has 2795
Blast hits to 943 proteins in 155 species: Archae - 0;
Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153;
Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).		 0.86 0.3 -0.33
72 AT1G64680 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits
to 146 proteins in 26 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 0.86 0.32 -0.32
73 AT4G30825 Tetratricopeptide repeat (TPR)-like superfamily protein 0.86 0.34 -0.29
74 AT2G14880 SWIB/MDM2 domain superfamily protein 0.86 0.3 -0.32
75 AT2G47590 photolyase/blue-light receptor 2 photolyase/blue-light receptor 2 0.86 0.31 -0.31
76 AT3G51140 Protein of unknown function (DUF3353) 0.86 0.29 -0.33
77 AT3G60620 cytidinediphosphate diacylglycerol synthase 5 cytidinediphosphate diacylglycerol
synthase 5		 0.85 0.3 -0.31
78 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.85 0.31 -0.33
79 AT4G36390 Methylthiotransferase 0.85 0.31 -0.32
80 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.85 0.33 -0.33
81 AT3G10160 DHFS-FPGS homolog C A. THALIANA DHFS-FPGS HOMOLOG C,
DHFS-FPGS homolog C,
folylpolyglutamate synthetase 2		 0.85 0.31 -0.31
82 AT2G41720 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 2654 0.85 0.31 -0.31
83 AT3G28040 Leucine-rich receptor-like protein kinase family protein 0.85 0.34 -0.35
84 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.85 0.31 -0.31
85 AT3G02450 cell division protein ftsH, putative 0.85 0.3 -0.3
86 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.85 0.32 -0.33
87 AT5G20040 isopentenyltransferase 9 ARABIDOPSIS THALIANA
ISOPENTENYLTRANSFERASE 9,
isopentenyltransferase 9		 0.85 0.31 -0.29
88 AT3G29375 XH domain-containing protein 0.85 0.34 -0.29
89 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 0.85 0.33 -0.33
90 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.85 0.31 -0.32
91 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.85 0.3 -0.3
92 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.85 0.31 -0.34
93 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 -0.82 0.32 -0.32
94 AT4G26060 Ribosomal protein L18ae family -0.82 0.32 -0.31
95 AT4G13180 NAD(P)-binding Rossmann-fold superfamily protein -0.81 0.32 -0.3
96 AT1G77920 bZIP transcription factor family protein -0.79 0.32 -0.32
97 AT4G22530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.79 0.31 -0.33
98 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.79 0.33 -0.32
99 AT5G06750 Protein phosphatase 2C family protein -0.79 0.29 -0.34
100 AT3G25610 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.79 0.32 -0.34
101 AT4G20830 FAD-binding Berberine family protein -0.78 0.31 -0.3
102 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.78 0.32 -0.34
103 AT1G63460 glutathione peroxidase 8 ATGPX8, glutathione peroxidase 8 -0.78 0.32 -0.3
104 AT5G59510 ROTUNDIFOLIA like 5 DEVIL 18, ROTUNDIFOLIA like 5 -0.78 0.32 -0.32
105 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.78 0.3 -0.34
106 AT5G54860 Major facilitator superfamily protein -0.77 0.32 -0.31
107 AT3G04060 NAC domain containing protein 46 NAC domain containing protein 46,
NAC domain containing protein 46		 -0.77 0.3 -0.3
108 AT3G12740 ALA-interacting subunit 1 ALA-interacting subunit 1 -0.76 0.33 -0.34
109 AT5G63790 NAC domain containing protein 102 NAC domain containing protein 102,
NAC domain containing protein 102		 -0.76 0.3 -0.31
110 AT1G21450 SCARECROW-like 1 SCARECROW-like 1 -0.76 0.3 -0.31
111 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.76 0.31 -0.31
112 AT2G06255 ELF4-like 3 ELF4-like 3 -0.76 0.34 -0.31
113 AT5G25930 Protein kinase family protein with leucine-rich repeat
domain		 -0.76 0.31 -0.31
114 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.76 0.31 -0.3
115 AT2G33710 Integrase-type DNA-binding superfamily protein -0.75 0.3 -0.32
116 AT1G72900 Toll-Interleukin-Resistance (TIR) domain-containing protein -0.75 0.32 -0.31
117 AT3G28850 Glutaredoxin family protein -0.75 0.29 -0.29
118 AT2G15490 UDP-glycosyltransferase 73B4 UDP-glycosyltransferase 73B4 -0.75 0.3 -0.32
119 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.75 0.32 -0.32
120 AT3G02360 6-phosphogluconate dehydrogenase family protein -0.74 0.34 -0.3
121 AT5G38900 Thioredoxin superfamily protein -0.74 0.32 -0.31
122 AT4G31550 WRKY DNA-binding protein 11 ATWRKY11, WRKY DNA-binding protein
11		 -0.74 0.3 -0.35
123 AT5G67310 cytochrome P450, family 81, subfamily G, polypeptide 1 cytochrome P450, family 81,
subfamily G, polypeptide 1		 -0.74 0.34 -0.33
124 AT5G20230 blue-copper-binding protein blue-copper-binding protein, BLUE
COPPER BINDING PROTEIN,
blue-copper-binding protein,
SENESCENCE ASSOCIATED GENE 14		 -0.74 0.32 -0.31
125 AT1G70530 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 cysteine-rich RLK (RECEPTOR-like
protein kinase) 3		 -0.74 0.33 -0.31
126 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.73 0.3 -0.31
127 AT1G02400 gibberellin 2-oxidase 6 Arabidopsis thaliana gibberellin
2-oxidase 4, ARABIDOPSIS THALIANA
GIBBERELLIN 2-OXIDASE 6,
DOWNSTREAM TARGET OF AGL15 1,
gibberellin 2-oxidase 6		 -0.72 0.32 -0.3
128 AT1G19020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits
to 88 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.3 -0.34
129 AT3G03610 ELMO/CED-12 family protein -0.72 0.3 -0.32
130 AT3G50260 cooperatively regulated by ethylene and jasmonate 1 ATERF#011, cooperatively regulated
by ethylene and jasmonate 1, DREB
AND EAR MOTIF PROTEIN 1		 -0.72 0.31 -0.34