AT2G40960 : -
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AGICode AT2G40960
Description Single-stranded nucleic acid binding R3H protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G40960 Single-stranded nucleic acid binding R3H protein 1 0.31 -0.32
2 AT3G44320 nitrilase 3 NITRILASE 3, nitrilase 3 -0.9 0.28 -0.29
3 AT5G04810 pentatricopeptide (PPR) repeat-containing protein 0.86 0.32 -0.31
4 AT1G07750 RmlC-like cupins superfamily protein -0.85 0.3 -0.32
5 AT3G60130 beta glucosidase 16 beta glucosidase 16 -0.85 0.31 -0.31
6 AT1G52140 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits
to 114 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.84 0.32 -0.29
7 AT5G63680 Pyruvate kinase family protein -0.84 0.31 -0.3
8 AT5G17650 glycine/proline-rich protein -0.83 0.31 -0.32
9 AT5G10800 RNA recognition motif (RRM)-containing protein 0.83 0.32 -0.31
10 AT4G26060 Ribosomal protein L18ae family -0.82 0.31 -0.29
11 AT4G07390 Mannose-P-dolichol utilization defect 1 protein -0.82 0.31 -0.31
12 AT1G12140 flavin-monooxygenase glucosinolate S-oxygenase 5 flavin-monooxygenase glucosinolate
S-oxygenase 5
-0.82 0.32 -0.32
13 AT1G72470 exocyst subunit exo70 family protein D1 exocyst subunit exo70 family
protein D1, exocyst subunit exo70
family protein D1
-0.82 0.33 -0.34
14 AT5G67600 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).
WINDHOSE 1 -0.81 0.33 -0.32
15 AT5G51040 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF339 (InterPro:IPR005631); Has 532 Blast
hits to 532 proteins in 207 species: Archae - 0; Bacteria -
285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0;
Other Eukaryotes - 150 (source: NCBI BLink).
-0.81 0.3 -0.32
16 AT1G17080 Ribosomal protein L18ae family -0.81 0.3 -0.32
17 AT3G61150 homeodomain GLABROUS 1 HOMEODOMAIN-GLABRA2 1, homeodomain
GLABROUS 1
0.81 0.33 -0.33
18 AT5G64370 beta-ureidopropionase beta-ureidopropionase, PYRIMIDINE
3
-0.81 0.3 -0.31
19 AT5G17380 Thiamine pyrophosphate dependent pyruvate decarboxylase
family protein
-0.81 0.31 -0.32
20 AT5G11970 Protein of unknown function (DUF3511) -0.81 0.32 -0.31
21 AT1G05620 uridine-ribohydrolase 2 nucleoside hydrolase 2,
uridine-ribohydrolase 2
-0.81 0.27 -0.31
22 AT3G45310 Cysteine proteinases superfamily protein -0.8 0.33 -0.3
23 AT5G05110 Cystatin/monellin family protein -0.8 0.32 -0.34
24 AT3G04000 NAD(P)-binding Rossmann-fold superfamily protein -0.8 0.31 -0.31
25 AT3G62580 Late embryogenesis abundant protein (LEA) family protein -0.8 0.31 -0.31
26 AT1G49300 RAB GTPase homolog G3E ARABIDOPSIS RAB GTPASE HOMOLOG 7,
ARABIDOPSIS RAB GTPASE HOMOLOG
G3E, RAB GTPase homolog G3E
-0.8 0.3 -0.31
27 AT1G54340 isocitrate dehydrogenase isocitrate dehydrogenase -0.8 0.34 -0.31
28 AT2G25110 stromal cell-derived factor 2-like protein precursor Arabidopsis thaliana STROMAL
CELL-DERIVED FACTOR 2-like protein
precursor, ATSDF2-LIKE, stromal
cell-derived factor 2-like protein
precursor
-0.8 0.33 -0.32
29 AT5G11770 NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrial
-0.8 0.32 -0.32
30 AT3G56310 Melibiase family protein -0.8 0.33 -0.31
31 AT1G27000 Protein of unknown function (DUF1664) -0.8 0.34 -0.3
32 AT2G44350 Citrate synthase family protein ATCS, CITRATE SYNTHASE 4 -0.8 0.31 -0.3
33 AT3G02360 6-phosphogluconate dehydrogenase family protein -0.79 0.33 -0.33
34 AT1G77370 Glutaredoxin family protein -0.79 0.33 -0.31
35 AT3G27380 succinate dehydrogenase 2-1 succinate dehydrogenase 2-1 -0.79 0.33 -0.33
36 AT1G30040 gibberellin 2-oxidase gibberellin 2-oxidase, gibberellin
2-oxidase, GIBBERELLIN 2-OXIDASE 2
-0.79 0.3 -0.33
37 AT3G12800 short-chain dehydrogenase-reductase B DECR, short-chain
dehydrogenase-reductase B
-0.79 0.32 -0.34
38 AT1G68300 Adenine nucleotide alpha hydrolases-like superfamily
protein
-0.79 0.33 -0.31
39 AT1G09430 ATP-citrate lyase A-3 ATP-citrate lyase A-3 -0.79 0.31 -0.32
40 AT3G58750 citrate synthase 2 citrate synthase 2 -0.79 0.33 -0.3
41 AT2G01350 quinolinate phoshoribosyltransferase quinolinate
phoshoribosyltransferase
-0.79 0.32 -0.31
42 AT4G15940 Fumarylacetoacetate (FAA) hydrolase family -0.79 0.31 -0.31
43 AT1G29195 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 4 anthesis, C globular stage, 4 leaf senescence
stage, petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
-0.79 0.32 -0.28
44 AT5G33290 xylogalacturonan deficient 1 xylogalacturonan deficient 1 -0.79 0.31 -0.31
45 AT2G39780 ribonuclease 2 ribonuclease 2 -0.79 0.3 -0.31
46 AT5G45410 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits
to 124 proteins in 34 species: Archae - 2; Bacteria - 31;
Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.78 0.31 -0.31
47 AT1G76390 ARM repeat superfamily protein plant U-box 43 -0.78 0.3 -0.32
48 AT3G09810 isocitrate dehydrogenase VI isocitrate dehydrogenase VI -0.78 0.32 -0.32
49 AT3G59140 multidrug resistance-associated protein 14 ATP-binding cassette C10,
multidrug resistance-associated
protein 14, multidrug
resistance-associated protein 14
-0.78 0.32 -0.31
50 AT3G13910 Protein of unknown function (DUF3511) -0.78 0.31 -0.3
51 AT1G26550 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein
-0.78 0.31 -0.3
52 AT2G34070 TRICHOME BIREFRINGENCE-LIKE 37 TRICHOME BIREFRINGENCE-LIKE 37 -0.78 0.31 -0.33
53 AT5G56150 ubiquitin-conjugating enzyme 30 ubiquitin-conjugating enzyme 30 -0.78 0.31 -0.29
54 AT4G29130 hexokinase 1 ARABIDOPSIS THALIANA HEXOKINASE 1,
GLUCOSE INSENSITIVE 2, hexokinase
1
-0.78 0.31 -0.3
55 AT2G40800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits
to 43 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).
-0.78 0.34 -0.31
56 AT2G32830 phosphate transporter 1;5 phosphate transporter 1;5,
PHOSPHATE TRANSPORTER 5
-0.78 0.3 -0.31
57 AT5G56760 serine acetyltransferase 1;1 serine acetyltransferase 1;1,
SERINE ACETYLTRANSFERASE 52,
SERINE ACETYLTRANSFERASE 5, serine
acetyltransferase 1;1
-0.78 0.32 -0.32
58 AT2G29500 HSP20-like chaperones superfamily protein -0.77 0.33 -0.34
59 AT5G25590 Protein of unknown function (DUF630 and DUF632) 0.77 0.32 -0.31
60 AT4G35830 aconitase 1 aconitase 1 -0.77 0.31 -0.3
61 AT1G22400 UDP-Glycosyltransferase superfamily protein ARABIDOPSIS THALIANA UDP-GLUCOSYL
TRANSFERASE 85A1, UGT85A1
-0.77 0.3 -0.31
62 AT5G18490 Plant protein of unknown function (DUF946) -0.77 0.32 -0.32
63 AT3G17940 Galactose mutarotase-like superfamily protein -0.77 0.32 -0.32
64 AT1G77510 PDI-like 1-2 PROTEIN DISULFIDE ISOMERASE 6,
PDI-like 1-2, PROTEIN DISULFIDE
ISOMERASE 6, PDI-like 1-2
-0.77 0.31 -0.3
65 AT1G70700 TIFY domain/Divergent CCT motif family protein JASMONATE-ZIM-DOMAIN PROTEIN 9,
TIFY7
-0.77 0.32 -0.33
66 AT1G60420 DC1 domain-containing protein -0.77 0.34 -0.33
67 AT1G59720 Tetratricopeptide repeat (TPR)-like superfamily protein CHLORORESPIRATORY REDUCTION28 0.77 0.32 -0.33
68 AT3G29280 unknown protein; Has 24 Blast hits to 24 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.77 0.32 -0.33
69 AT4G17830 Peptidase M20/M25/M40 family protein -0.77 0.32 -0.32
70 AT3G17810 pyrimidine 1 pyrimidine 1 -0.77 0.31 -0.33
71 AT1G71100 Ribose 5-phosphate isomerase, type A protein RADIAL SWELLING 10 -0.77 0.3 -0.31
72 AT4G29490 Metallopeptidase M24 family protein -0.77 0.31 -0.33
73 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).
-0.77 0.32 -0.3
74 AT2G34810 FAD-binding Berberine family protein -0.77 0.3 -0.31
75 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein
-0.77 0.31 -0.33
76 AT5G07220 BCL-2-associated athanogene 3 BCL-2-associated athanogene 3,
BCL-2-associated athanogene 3
-0.77 0.31 -0.32
77 AT1G44350 IAA-leucine resistant (ILR)-like gene 6 IAA-leucine resistant (ILR)-like
gene 6
-0.77 0.32 -0.33
78 AT2G47470 thioredoxin family protein ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 11, PDI-LIKE
2-1, MATERNAL EFFECT EMBRYO ARREST
30, PROTEIN DISULFIDE ISOMERASE
11, UNFERTILIZED EMBRYO SAC 5
-0.77 0.3 -0.28
79 AT1G79590 syntaxin of plants 52 ATSYP52, syntaxin of plants 52 -0.77 0.31 -0.32
80 AT3G17840 receptor-like kinase 902 receptor-like kinase 902 0.76 0.33 -0.3
81 AT3G05470 Actin-binding FH2 (formin homology 2) family protein 0.76 0.33 -0.32
82 AT3G12740 ALA-interacting subunit 1 ALA-interacting subunit 1 -0.76 0.32 -0.29
83 AT2G22480 phosphofructokinase 5 phosphofructokinase 5 -0.76 0.31 -0.3
84 AT4G35630 phosphoserine aminotransferase phosphoserine aminotransferase -0.76 0.29 -0.31
85 AT2G32660 receptor like protein 22 receptor like protein 22, receptor
like protein 22
-0.76 0.3 -0.31
86 AT2G31200 actin depolymerizing factor 6 actin depolymerizing factor 6,
ATADF6
-0.76 0.31 -0.29
87 AT5G11520 aspartate aminotransferase 3 aspartate aminotransferase 3,
YELLOW-LEAF-SPECIFIC GENE 4
-0.76 0.33 -0.29
88 AT2G41890 curculin-like (mannose-binding) lectin family protein / PAN
domain-containing protein
0.76 0.31 -0.34
89 AT2G36330 Uncharacterised protein family (UPF0497) -0.76 0.34 -0.32
90 AT3G28730 high mobility group high mobility group, high mobility
group, NUCLEOSOME/CHROMATIN
ASSEMBLY FACTOR D, SSRP1
0.76 0.33 -0.3
91 AT5G10300 methyl esterase 5 AtHNL, ARABIDOPSIS THALIANA METHYL
ESTERASE 5, HYDROXYNITRILE LYASE,
methyl esterase 5
-0.76 0.33 -0.3
92 AT1G16180 Serinc-domain containing serine and sphingolipid
biosynthesis protein
-0.76 0.32 -0.33
93 AT1G23440 Peptidase C15, pyroglutamyl peptidase I-like -0.76 0.32 -0.3
94 AT5G59890 actin depolymerizing factor 4 actin depolymerizing factor 4,
ATADF4
-0.76 0.3 -0.32
95 AT1G04980 PDI-like 2-2 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 10, PDI-like
2-2, PROTEIN DISULFIDE ISOMERASE,
PDI-like 2-2
-0.75 0.32 -0.33
96 AT4G30270 xyloglucan endotransglucosylase/hydrolase 24 MERISTEM 5, meristem-5, SENESCENCE
4, xyloglucan
endotransglucosylase/hydrolase 24
-0.75 0.32 -0.32
97 AT1G10850 Leucine-rich repeat protein kinase family protein 0.75 0.31 -0.32
98 AT5G13550 sulfate transporter 4.1 sulfate transporter 4.1 -0.75 0.31 -0.3
99 AT2G02040 peptide transporter 2 ARABIDOPSIS THALIANA PEPTIDE
TRANSPORTER 2, ATPTR2-B, NITRATE
TRANSPORTER 1, peptide transporter
2, PTR2-B
-0.75 0.32 -0.32
100 AT3G12800 short-chain dehydrogenase-reductase B DECR, short-chain
dehydrogenase-reductase B
-0.75 0.31 -0.32
101 AT5G55850 RPM1-interacting protein 4 (RIN4) family protein NOI -0.75 0.31 -0.34
102 AT1G72800 RNA-binding (RRM/RBD/RNP motifs) family protein -0.75 0.32 -0.32
103 AT1G48440 B-cell receptor-associated 31-like -0.75 0.33 -0.32
104 AT3G46000 actin depolymerizing factor 2 actin depolymerizing factor 2 -0.75 0.32 -0.3
105 AT3G16330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits
to 109 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.75 0.32 -0.31
106 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.75 0.3 -0.32
107 AT1G71170 6-phosphogluconate dehydrogenase family protein -0.75 0.31 -0.3
108 AT3G43610 Spc97 / Spc98 family of spindle pole body (SBP) component 0.75 0.31 -0.32
109 AT3G62600 DNAJ heat shock family protein ATERDJ3B, ERDJ3B -0.75 0.33 -0.3
110 AT3G48890 membrane-associated progesterone binding protein 3 ARABIDOPSIS THALIANA
MEMBRANE-ASSOCIATED PROGESTERONE
BINDING PROTEIN 3, ATMP2,
membrane-associated progesterone
binding protein 3, MEMBRANE
STEROID BINDING PROTEIN 2
-0.75 0.31 -0.31
111 AT3G18630 uracil dna glycosylase uracil dna glycosylase, uracil dna
glycosylase
0.75 0.33 -0.3
112 AT1G35910 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein
trehalose-6-phosphate phosphatase
D
-0.75 0.3 -0.3
113 AT3G15020 Lactate/malate dehydrogenase family protein mitochondrial malate dehydrogenase
2
-0.75 0.32 -0.32
114 AT3G02780 isopentenyl pyrophosphate:dimethylallyl pyrophosphate
isomerase 2
ATISOPENTENYL DIPHOSPHE ISOMERASE
2, IPIAT1, isopentenyl
pyrophosphate:dimethylallyl
pyrophosphate isomerase 2
-0.75 0.29 -0.31
115 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727
-0.75 0.31 -0.31
116 AT2G17760 Eukaryotic aspartyl protease family protein -0.75 0.31 -0.33
117 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
-0.75 0.31 -0.32
118 AT4G23710 vacuolar ATP synthase subunit G2 vacuolar ATP synthase subunit G2,
VACUOLAR ATP SYNTHASE SUBUNIT G2,
VHA-G2
-0.75 0.3 -0.3
119 AT5G65310 homeobox protein 5 ATHB-5, homeobox protein 5,
homeobox protein 5
0.74 0.31 -0.31
120 AT1G61390 S-locus lectin protein kinase family protein 0.74 0.32 -0.31
121 AT3G20010 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related
0.74 0.32 -0.31
122 AT1G02110 Protein of unknown function (DUF630 and DUF632) 0.74 0.31 -0.3
123 AT2G27040 Argonaute family protein ARGONAUTE 4, OVEREXPRESSOR OF
CATIONIC PEROXIDASE 11
0.74 0.34 -0.32
124 AT5G13000 glucan synthase-like 12 glucan synthase-like 12, callose
synthase 3, gsl12, glucan
synthase-like 12
0.73 0.32 -0.32
125 AT1G05160 cytochrome P450, family 88, subfamily A, polypeptide 3 ATKAO1, cytochrome P450, family
88, subfamily A, polypeptide 3,
ENT-KAURENOIC ACID OXYDASE 1
0.73 0.3 -0.32
126 AT2G44440 Emsy N Terminus (ENT) domain-containing protein AtEML4, EMSY-like 4 0.73 0.32 -0.29
127 AT5G40740 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
0.73 0.3 -0.31
128 AT5G48360 Actin-binding FH2 (formin homology 2) family protein 0.72 0.31 -0.3
129 AT1G16220 Protein phosphatase 2C family protein 0.72 0.33 -0.31
130 AT4G28100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
anchored to plasma membrane, anchored to membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).
0.72 0.32 -0.31
131 AT5G55340 MBOAT (membrane bound O-acyl transferase) family protein 0.72 0.3 -0.3
132 AT5G02440 unknown protein; Has 71 Blast hits to 71 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.72 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
133 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle
-0.81 0.44 -0.46 C0120
134 C0128 Jasmonic acid (+/-)-Jasmonic acid (+)-Jasmonate; (-)-Jasmonate jasmonic acid biosynthesis -0.78 0.45 -0.44 C0128
135 C0220 Pyruvic acid - Pyruvate sucrose degradation to ethanol and lactate (anaerobic),
alanine degradation II (to D-lactate),
alanine degradation III,
glutamine biosynthesis III,
pyruvate fermentation to ethanol II,
serine racemization,
methylerythritol phosphate pathway,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
valine biosynthesis,
seleno-amino acid biosynthesis,
phenylalanine degradation III,
an electron-transfer-related quinone + D-lactate -> an electron-transfer-related quinol + pyruvate,
tetrahydrofolate biosynthesis II,
methylglyoxal degradation I,
glycolysis I,
tryptophan biosynthesis,
salicylate biosynthesis I,
pyruvate fermentation to lactate,
methionine biosynthesis II,
glutathione-mediated detoxification II,
IAA biosynthesis I,
TCA cycle variation V (plant),
Rubisco shunt,
gluconeogenesis I,
acetaldehyde biosynthesis I,
homocysteine and cysteine interconversion,
glycolysis IV (plant cytosol),
4-aminobutyrate degradation IV,
beta-alanine biosynthesis II,
isoleucine biosynthesis I (from threonine),
glutamate degradation IV,
lysine biosynthesis VI,
acetyl-CoA biosynthesis (from pyruvate),
alanine biosynthesis II
-0.76 0.41 -0.44 C0220