C0052 : Adenosine
Query Information
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ID C0052
Compound name Adenosine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=ADENOSINE
Pathway Information adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G17710 unknown protein; Has 39 Blast hits to 39 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.75 0.32 -0.34
2 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.75 0.33 -0.3
3 AT2G21195 unknown protein; Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.75 0.31 -0.37
4 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 0.74 0.33 -0.3
5 AT1G28260 Telomerase activating protein Est1 0.74 0.29 -0.3
6 AT1G62960 ACC synthase 10 ACC synthase 10 -0.72 0.33 -0.31
7 AT4G26840 small ubiquitin-like modifier 1 ARABIDOPSIS THALIANA SMALL
UBIQUITIN-LIKE MODIFIER 1, SMALL
UBIQUITIN-LIKE MODIFIER 1, SMALL
UBIQUITIN-LIKE MODIFIER 1, small
ubiquitin-like modifier 1		 -0.71 0.34 -0.33
8 AT3G53890 Ribosomal protein S21e -0.7 0.3 -0.33
9 AT2G47580 spliceosomal protein U1A spliceosomal protein U1A -0.7 0.31 -0.31
10 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 -0.7 0.32 -0.31
11 AT1G57620 emp24/gp25L/p24 family/GOLD family protein -0.7 0.31 -0.3
12 AT4G09320 Nucleoside diphosphate kinase family protein NDPK1 -0.69 0.32 -0.31
13 AT5G23900 Ribosomal protein L13e family protein -0.69 0.33 -0.31
14 AT3G04400 Ribosomal protein L14p/L23e family protein embryo defective 2171 -0.69 0.33 -0.35
15 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.68 0.3 -0.31
16 AT2G45710 Zinc-binding ribosomal protein family protein -0.68 0.31 -0.3
17 AT5G27770 Ribosomal L22e protein family -0.68 0.31 -0.32
18 AT3G16100 RAB GTPase homolog G3C ATRAB7D, RAB GTPase homolog G3C,
RAB GTPase homolog G3C		 -0.68 0.31 -0.3
19 AT5G05990 Mitochondrial glycoprotein family protein -0.68 0.35 -0.31
20 AT5G06770 KH domain-containing protein / zinc finger (CCCH type)
family protein		 -0.68 0.33 -0.32
21 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 -0.67 0.31 -0.3
22 AT1G22690 Gibberellin-regulated family protein -0.67 0.32 -0.32
23 AT4G13170 Ribosomal protein L13 family protein -0.67 0.29 -0.32
24 AT3G09500 Ribosomal L29 family protein -0.67 0.32 -0.32
25 AT3G05000 Transport protein particle (TRAPP) component -0.67 0.36 -0.3
26 AT3G23710 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-III,
translocon at the inner envelope
membrane of chloroplasts 22-III		 -0.67 0.32 -0.31
27 AT5G57290 60S acidic ribosomal protein family -0.66 0.31 -0.33
28 AT2G40010 Ribosomal protein L10 family protein -0.66 0.33 -0.29
29 AT3G07350 Protein of unknown function (DUF506) 0.66 0.32 -0.31
30 AT3G14080 Small nuclear ribonucleoprotein family protein -0.66 0.34 -0.34
31 AT1G26450 Carbohydrate-binding X8 domain superfamily protein 0.65 0.34 -0.32
32 AT4G07480 transposable element gene -0.65 0.3 -0.32
33 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.65 0.32 -0.31
34 AT3G62960 Thioredoxin superfamily protein -0.65 0.33 -0.31
35 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein 0.65 0.3 -0.3
36 AT1G15330 Cystathionine beta-synthase (CBS) protein 0.65 0.32 -0.3
37 AT4G00810 60S acidic ribosomal protein family -0.65 0.29 -0.32
38 AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 -0.64 0.33 -0.29
39 AT5G34790 transposable element gene -0.64 0.31 -0.33
40 AT2G11140 transposable element gene -0.64 0.29 -0.31
41 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.33 -0.32
42 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 -0.64 0.3 -0.3
43 AT1G23330 alpha/beta-Hydrolases superfamily protein 0.64 0.32 -0.33
44 AT5G55790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G45163.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.64 0.32 -0.32
45 AT2G38550 Transmembrane proteins 14C -0.63 0.32 -0.33
46 AT4G18593 dual specificity protein phosphatase-related -0.63 0.31 -0.29
47 AT2G34840 Coatomer epsilon subunit 0.63 0.3 -0.33
48 AT3G09850 D111/G-patch domain-containing protein 0.63 0.33 -0.34
49 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 -0.63 0.32 -0.31
50 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.63 0.31 -0.29
51 AT1G60995 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to 170
proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa -
110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink).		 -0.63 0.33 -0.31
52 AT4G17960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits
to 45 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.31 -0.33
53 AT1G53120 RNA-binding S4 domain-containing protein -0.63 0.3 -0.31
54 AT4G37660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 -0.63 0.31 -0.31
55 AT1G02700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink).		 0.62 0.32 -0.33
56 ATMG00890 hypothetical protein ORF106D 0.62 0.31 -0.3
57 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 -0.62 0.31 -0.29
58 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 -0.62 0.31 -0.31
59 AT4G37445 BEST Arabidopsis thaliana protein match is: Calcium-binding
EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.33 -0.31
60 AT3G12820 myb domain protein 10 myb domain protein 10, myb domain
protein 10		 -0.62 0.32 -0.33
61 AT5G12470 Protein of unknown function (DUF3411) -0.62 0.34 -0.33
62 AT2G25780 Protein of unknown function (DUF1677) -0.62 0.34 -0.3
63 AT4G26150 cytokinin-responsive gata factor 1 cytokinin-responsive gata factor
1, GATA TRANSCRIPTION FACTOR 22,
GNC-LIKE		 -0.62 0.32 -0.31
64 AT5G19760 Mitochondrial substrate carrier family protein -0.62 0.3 -0.33
65 AT2G23240 Plant EC metallothionein-like protein, family 15 Arabidopsis thaliana
metallothionein 4b		 0.62 0.32 -0.33
66 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 0.61 0.33 -0.34
67 AT5G04420 Galactose oxidase/kelch repeat superfamily protein -0.61 0.31 -0.3
68 AT3G03150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast
hits to 39 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.32 -0.3
69 AT4G09720 RAB GTPase homolog G3A RAB GTPase homolog G3A, RAB GTPase
homolog G3A		 -0.61 0.32 -0.33
70 AT1G71770 poly(A)-binding protein 5 poly(A)-binding protein 5 -0.61 0.32 -0.31
71 AT5G14070 Thioredoxin superfamily protein ROXY2 -0.61 0.32 -0.29
72 AT4G35000 ascorbate peroxidase 3 ascorbate peroxidase 3 -0.61 0.32 -0.33
73 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 0.61 0.32 -0.3
74 AT2G43280 Far-red impaired responsive (FAR1) family protein -0.61 0.32 -0.31
75 AT2G33070 nitrile specifier protein 2 NITRILE-SPECIFIER PROTEIN 2,
nitrile specifier protein 2		 0.6 0.31 -0.34
76 AT5G58380 SOS3-interacting protein 1 CBL-INTERACTING PROTEIN KINASE 10,
PKS2, SOS3-interacting protein 1,
SNF1-RELATED PROTEIN KINASE 3.8		 0.6 0.31 -0.31
77 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 0.59 0.31 -0.29
78 AT3G26730 RING/U-box superfamily protein 0.59 0.34 -0.29
79 AT3G31380 transposable element gene 0.58 0.3 -0.31
80 AT5G09930 ABC transporter family protein ATP-binding cassette F2 0.58 0.31 -0.33
81 AT2G42700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
vesicle-mediated transport, vesicle docking involved in
exocytosis; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like
protein (InterPro:IPR001619); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.58 0.33 -0.31
82 AT3G26860 Plant self-incompatibility protein S1 family 0.58 0.34 -0.33
83 AT3G03790 ankyrin repeat family protein / regulator of chromosome
condensation (RCC1) family protein		 0.57 0.33 -0.34
84 AT1G11630 Tetratricopeptide repeat (TPR)-like superfamily protein 0.57 0.31 -0.31
85 AT5G07920 diacylglycerol kinase1 DIACYLGLYCEROL KINASE 1,
diacylglycerol kinase1		 0.57 0.31 -0.3
86 AT5G06730 Peroxidase superfamily protein 0.57 0.31 -0.3
87 AT5G57840 HXXXD-type acyl-transferase family protein 0.57 0.3 -0.3
88 AT5G10880 tRNA synthetase-related / tRNA ligase-related 0.57 0.3 -0.32
89 AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5B 0.57 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
90 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		1 0.32 -0.34 C0052
91 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.89 0.45 -0.42 C0056
92 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		0.86 0.45 -0.43 C0057
93 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		0.77 0.29 -0.31 C0140
94 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		0.76 0.32 -0.31 C0260
95 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.76 0.4 -0.45 C0030
96 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.76 0.42 -0.44 C0099
97 C0171 MST_2182.9 - - - -0.75 0.5 -0.45
98 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.75 0.31 -0.32 C0137
99 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.74 0.44 -0.44 C0032
100 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		0.72 0.3 -0.32 C0066
101 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.72 0.49 -0.4
102 C0175 MST_2379.9 - - - 0.71 0.46 -0.47
103 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		0.71 0.33 -0.32 C0054
104 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		0.71 0.33 -0.29 C0257
105 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		0.7 0.32 -0.31 C0216
106 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.69 0.44 -0.42 C0234
107 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.68 0.43 -0.42 C0262
108 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		0.68 0.45 -0.43 C0015
109 C0094 Galactosamine D-Galactosamine - - 0.68 0.44 -0.46
110 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.68 0.43 -0.46 C0075
111 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.68 0.43 -0.44 C0261
112 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.66 0.43 -0.45 C0091
113 C0006 β-Homothreonine L-β-Homothreonine - - 0.66 0.46 -0.46
114 C0062 Betain - - - 0.63 0.33 -0.32
115 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.63 0.45 -0.42 C0073
116 C0113 Histidinol - Histidinol histidine biosynthesis 0.63 0.32 -0.31 C0113
117 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.63 0.46 -0.45 C0053
118 C0114 Homocystine L-Homocystine - - 0.6 0.33 -0.3
119 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.6 0.31 -0.31 C0218
120 C0112 Histidine L-Histidine L-Histidine tRNA charging,
histidine biosynthesis 		0.6 0.32 -0.32 C0112
121 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		0.59 0.29 -0.31 C0259