Muatnts or Experiments ipt3-1
Treatment No treatment
Control WT
Parental line Nossen
Growth condition 1/2 MS plate
Tissue Aerial part
Mutant description Deficiency of cytokinin biosynthesis
Growth protocol After sterilization of seeds treated with hypochlorous acid (10%) for 10 min, seeds were kept in distilled water for 3 days under dark condition at 4 ˚C to enhance germination. Seedling were grown for 7 days on 1/2 MS agar plate (0.8% agar, pH 5.7) at 22 ˚C, 24 h continuous light condition.
Reference Takei, K., Ueda, N., Aoki, K., Kuromori, T., Hirayama, T., Shinozaki, K., Yamaya, T., and Sakakibara, H. (2004). AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis. Plant & Cell Physiology 45, 1053-1062.
Genes statistics
AGI code p-value Ex value cnt value Signal ratio Annotation Link
AT2G36120 0.0118 0.621 0.041 3.92 Glycine-rich protein family
 tair
AT3G13610 0.0252 0.307 0.023 3.73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
 tair
AT3G60140 0.0119 0.02 0.208 -3.41 Glycosyl hydrolase superfamily protein
 tair
AT3G53200 0.0038 0.011 0.112 -3.31 myb domain protein 27
 tair
AT1G05370 0.0252 0.027 0.224 -3.08 Sec14p-like phosphatidylinositol transfer family protein
 tair
AT3G28580 0.0041 0.08 0.012 2.76 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
 tair
AT3G48560 0.0000 126.495 23.031 2.46 chlorsulfuron/imidazolinone resistant 1
 tair
AT3G63110 0.0005 0.334 1.605 -2.27 isopentenyltransferase 3
 tair
AT2G38520 0.0306 1.291 0.294 2.13 transposable element gene
 tair
AT1G27610 0.0161 0.169 0.041 2.03 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: LP.04 four leaves visible
 tair
AT5G58460 0.0020 0.225 0.055 2.03 cation/H+ exchanger 25
 tair
AT4G15210 0.0037 0.119 0.464 -1.96 beta-amylase 5
 tair
AT5G43530 0.0273 0.043 0.164 -1.94 Helicase protein with RING/U-box domain
 tair
AT3G57900 0.0483 0.194 0.051 1.94 unknown protein; Has 22 Blast hits to 22 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
 tair
AT3G19350 0.0047 0.334 1.258 -1.92 maternally expressed pab C-terminal
 tair
AT5G20460 0.0437 0.18 0.048 1.91 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).
 tair
AT2G44460 0.0164 0.367 1.379 -1.91 beta glucosidase 28
 tair
AT1G72260 0.0125 0.635 2.22 -1.81 thionin 2.1
 tair
AT2G04490 0.0108 0.333 0.098 1.77 transposable element gene
 tair
AT5G46730 0.0206 1.262 0.373 1.76 glycine-rich protein
 tair
ATMG00510 0.0321 0.281 0.087 1.7 NADH dehydrogenase subunit 7
AT1G52990 0.0102 0.072 0.23 -1.67 thioredoxin family protein
AT1G50530 0.0191 0.043 0.136 -1.67 BEST Arabidopsis thaliana protein match is:
Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
AT3G42140 0.0352 0.481 0.164 1.55 zinc ion binding;nucleic acid binding
AT4G25560 0.0434 0.269 0.092 1.55 myb domain protein 18
AT4G15440 0.0141 3.272 9.287 -1.51 hydroperoxide lyase 1
AT4G17280 0.0096 0.6 0.215 1.48 Auxin-responsive family protein
AT5G48850 0.0008 1.83 4.941 -1.43 Tetratricopeptide repeat (TPR)-like superfamily protein
AT5G26220 0.0242 0.849 2.274 -1.42 ChaC-like family protein
AT3G08820 0.0212 0.455 0.17 1.42 Pentatricopeptide repeat (PPR) superfamily protein
AT1G02205 0.0405 1.667 4.246 -1.35 Fatty acid hydroxylase superfamily
AT1G24070 0.0228 1.07 2.71 -1.34 cellulose synthase-like A10
AT3G18450 0.0275 0.236 0.094 1.33 PLAC8 family protein
AT5G64530 0.0171 0.174 0.432 -1.31 xylem NAC domain 1
AT4G09300 0.0374 0.248 0.101 1.3 LisH and RanBPM domains containing protein
AT4G18250 0.0444 0.301 0.124 1.28 receptor serine/threonine kinase
AT5G03350 0.0227 4.473 10.878 -1.28 Legume lectin family protein
AT3G58810 0.0220 0.27 0.112 1.27 metal tolerance protein A2
AT3G12955 0.0245 0.205 0.086 1.25 SAUR-like auxin-responsive protein family
AT1G22670 0.0477 0.321 0.136 1.24 Protease-associated (PA) RING/U-box zinc finger family
protein
AT5G54060 0.0042 0.523 1.235 -1.24 UDP-glucose:flavonoid 3-o-glucosyltransferase
AT3G28220 0.0422 19.218 44.723 -1.22 TRAF-like family protein
AT3G29630 0.0151 0.238 0.103 1.21 UDP-Glycosyltransferase superfamily protein
AT1G15790 0.0096 0.365 0.162 1.17 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT3G49580 0.0025 0.967 2.152 -1.15 response to low sulfur 1
AT3G17180 0.0161 0.332 0.149 1.15 serine carboxypeptidase-like 33
AT3G19550 0.0332 1.205 0.55 1.13 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED
DURING: 9 growth stages; Has 36 Blast hits to 36 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
AT2G30540 0.0055 0.973 2.137 -1.13 Thioredoxin superfamily protein
AT5G38870 0.0211 0.693 0.326 1.09 transposable element gene
AT5G03190 0.0355 0.302 0.64 -1.08 conserved peptide upstream open reading frame 47
AT5G42800 0.0015 1.387 2.939 -1.08 dihydroflavonol 4-reductase
AT4G10490 0.0254 0.194 0.094 1.05 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
AT5G48060 0.0129 0.357 0.728 -1.03 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein
AT5G11920 0.0210 0.618 0.304 1.03 6-&1-fructan exohydrolase
AT5G28230 0.0072 1.016 0.508 1 pseudogene
AT5G13740 0.0467 5.9 11.739 -0.99 zinc induced facilitator 1
AT3G62100 0.0243 0.195 0.388 -0.99 indole-3-acetic acid inducible 30
AT1G26700 0.0330 0.117 0.228 -0.96 Seven transmembrane MLO family protein
AT5G03130 0.0252 0.227 0.441 -0.96 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
AT5G22960 0.0360 0.318 0.164 0.96 alpha/beta-Hydrolases superfamily protein
AT3G28740 0.0021 2.904 5.636 -0.96 Cytochrome P450 superfamily protein
AT1G50590 0.0191 0.351 0.678 -0.95 RmlC-like cupins superfamily protein
AT1G15550 0.0467 0.896 1.722 -0.94 gibberellin 3-oxidase 1
AT3G27920 0.0016 0.129 0.248 -0.94 myb domain protein 0
AT5G17220 0.0180 1.29 2.463 -0.93 glutathione S-transferase phi 12
AT3G01820 0.0159 1.659 0.878 0.92 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
AT4G21390 0.0172 0.144 0.271 -0.92 S-locus lectin protein kinase family protein
AT1G10640 0.0328 1.939 3.679 -0.92 Pectin lyase-like superfamily protein
AT1G29510 0.0185 1.569 2.976 -0.92 SAUR-like auxin-responsive protein family
AT5G60280 0.0359 0.394 0.208 0.92 Concanavalin A-like lectin protein kinase family protein
AT1G20690 0.0226 0.289 0.153 0.92 SWI-SNF-related chromatin binding protein
AT4G02290 0.0207 1.661 3.126 -0.91 glycosyl hydrolase 9B13
AT4G29700 0.0079 1.43 2.687 -0.91 Alkaline-phosphatase-like family protein
AT5G12940 0.0058 0.585 1.093 -0.9 Leucine-rich repeat (LRR) family protein
AT3G05690 0.0485 1.308 2.417 -0.89 nuclear factor Y
AT3G16490 0.0437 0.387 0.705 -0.87 IQ-domain 26
AT1G67750 0.0185 2.992 5.47 -0.87 Pectate lyase family protein
AT2G21590 0.0189 0.528 0.962 -0.86 Glucose-1-phosphate adenylyltransferase family protein
AT1G08920 0.0042 0.955 1.72 -0.85 ERD (early response to dehydration) six-like 1
AT1G09220 0.0389 0.369 0.207 0.84 Pentatricopeptide repeat (PPR) superfamily protein
AT2G25680 0.0059 0.642 0.36 0.84 molybdate transporter 1
AT3G30846 0.0208 0.153 0.086 0.84 transposable element gene
AT3G05400 0.0161 0.595 1.063 -0.84 Major facilitator superfamily protein
AT2G36750 0.0314 0.966 0.543 0.83 UDP-glucosyl transferase 73C1
AT5G07030 0.0060 9.256 16.418 -0.83 Eukaryotic aspartyl protease family protein
AT5G59330 0.0066 1.915 3.392 -0.83 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein
AT3G25710 0.0371 0.587 1.047 -0.83 basic helix-loop-helix 32
AT5G59780 0.0376 3.859 2.177 0.83 myb domain protein 59
AT2G14580 0.0164 1.781 3.151 -0.82 basic pathogenesis-related protein 1
AT1G17830 0.0220 0.422 0.238 0.82 Protein of unknown function (DUF789)
AT2G25900 0.0283 4.349 7.676 -0.82 Zinc finger C-x8-C-x5-C-x3-H type family protein
AT3G52550 0.0438 0.232 0.409 -0.82 BEST Arabidopsis thaliana protein match is: ovate family
protein 18 (TAIR:AT3G52540.1); Has 5496 Blast hits to 1338
proteins in 151 species: Archae - 0; Bacteria - 23; Metazoa
- 3754; Fungi - 379; Plants - 301; Viruses - 154; Other
Eukaryotes - 885 (source: NCBI BLink).
AT3G50770 0.0448 0.704 0.402 0.81 calmodulin-like 41
AT5G43150 0.0024 1.352 2.365 -0.81 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).
AT2G21200 0.0417 0.309 0.542 -0.81 SAUR-like auxin-responsive protein family
AT3G52710 0.0140 0.937 0.543 0.79 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast
hits to 64 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT1G22160 0.0357 1.54 2.67 -0.79 Protein of unknown function (DUF581)
AT1G01900 0.0355 1.101 1.903 -0.79 subtilase family protein
AT1G62430 0.0221 3.229 5.544 -0.78 CDP-diacylglycerol synthase 1
AT3G45990 0.0474 0.211 0.123 0.78 Cofilin/tropomyosin-type actin-binding protein family
AT3G61740 0.0183 0.255 0.433 -0.77 SET domain protein 14
AT1G17710 0.0019 0.379 0.647 -0.77 Pyridoxal phosphate phosphatase-related protein
AT1G47770 0.0038 0.3 0.177 0.77 Beta-galactosidase related protein
AT1G65180 0.0062 0.44 0.258 0.77 Cysteine/Histidine-rich C1 domain family protein
AT2G29820 0.0410 0.189 0.111 0.77 Galactose oxidase/kelch repeat superfamily protein
AT5G65970 0.0473 0.525 0.307 0.77 Seven transmembrane MLO family protein
AT1G07150 0.0425 0.272 0.161 0.76 mitogen-activated protein kinase kinase kinase 13
AT1G73010 0.0110 0.73 1.237 -0.76 phosphate starvation-induced gene 2
AT2G34190 0.0241 0.962 1.62 -0.75 Xanthine/uracil permease family protein
AT3G17609 0.0144 1.759 1.047 0.75 HY5-homolog
AT1G32430 0.0389 0.387 0.23 0.75 F-box and associated interaction domains-containing protein
AT4G02280 0.0042 0.333 0.2 0.74 sucrose synthase 3
AT2G40610 0.0294 6.336 10.612 -0.74 expansin A8
AT1G28330 0.0038 2.888 4.808 -0.74 dormancy-associated protein-like 1
AT5G65090 0.0081 0.655 0.392 0.74 DNAse I-like superfamily protein
AT1G75470 0.0363 0.596 0.358 0.74 purine permease 15
AT3G28420 0.0034 0.322 0.536 -0.73 Putative membrane lipoprotein
AT3G16920 0.0175 0.516 0.858 -0.73 chitinase-like protein 2
AT1G74420 0.0385 0.366 0.606 -0.73 fucosyltransferase 3
AT1G04770 0.0090 4.073 6.735 -0.73 Tetratricopeptide repeat (TPR)-like superfamily protein
AT1G48180 0.0063 0.58 0.96 -0.73 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT3G13420 0.0067 0.606 0.367 0.72 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G55535.1); Has 66 Blast hits
to 66 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT5G24660 0.0013 2.869 4.736 -0.72 response to low sulfur 2
AT3G45970 0.0068 3.73 2.258 0.72 expansin-like A1
AT4G01840 0.0031 0.293 0.481 -0.71 Ca2+ activated outward rectifying K+ channel 5
AT3G01350 0.0311 0.582 0.946 -0.7 Major facilitator superfamily protein
AT5G25090 0.0286 1.019 1.653 -0.7 early nodulin-like protein 13
AT5G44400 0.0292 2.483 4.046 -0.7 FAD-binding Berberine family protein
AT4G14470 0.0174 0.381 0.234 0.7 transposable element gene
AT5G12170 0.0137 4.517 2.806 0.69 CRT (chloroquine-resistance transporter)-like transporter 3
AT4G04830 0.0061 12.06 19.411 -0.69 methionine sulfoxide reductase B5
AT3G48710 0.0473 0.614 0.986 -0.69 DEK domain-containing chromatin associated protein
AT5G25450 0.0086 1.378 0.855 0.69 Cytochrome bd ubiquinol oxidase
AT4G39830 0.0163 0.427 0.265 0.69 Cupredoxin superfamily protein
AT4G26090 0.0017 0.314 0.502 -0.68 NB-ARC domain-containing disease resistance protein
AT2G29070 0.0274 0.5 0.799 -0.68 Ubiquitin fusion degradation UFD1 family protein
AT5G03120 0.0194 4.182 2.63 0.67 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
AT5G59240 0.0176 1.13 0.708 0.67 Ribosomal protein S8e family protein
AT5G59220 0.0106 0.706 1.124 -0.67 highly ABA-induced PP2C gene 1
AT2G39230 0.0356 0.395 0.25 0.66 LATERAL ORGAN JUNCTION
AT5G03090 0.0014 7.321 11.587 -0.66 BEST Arabidopsis thaliana protein match is: mto 1
responding down 1 (TAIR:AT1G53480.1); Has 7 Blast hits to 7
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
AT3G58520 0.0126 0.899 0.57 0.66 Ubiquitin carboxyl-terminal hydrolase family protein
AT3G61850 0.0266 0.289 0.455 -0.65 Dof-type zinc finger DNA-binding family protein
AT3G27200 0.0271 1.28 2.011 -0.65 Cupredoxin superfamily protein
AT5G46140 0.0221 0.341 0.217 0.65 Protein of unknown function (DUF295)
AT2G41710 0.0230 0.745 1.169 -0.65 Integrase-type DNA-binding superfamily protein
AT1G07390 0.0332 1.764 1.124 0.65 receptor like protein 1
AT5G67520 0.0174 0.387 0.249 0.64 adenosine-5'-phosphosulfate (APS) kinase 4
AT3G19620 0.0001 0.52 0.811 -0.64 Glycosyl hydrolase family protein
AT3G57690 0.0083 1.207 0.773 0.64 arabinogalactan protein 23
AT5G65530 0.0383 0.264 0.413 -0.64 Protein kinase superfamily protein
AT4G39210 0.0102 0.525 0.817 -0.64 Glucose-1-phosphate adenylyltransferase family protein
AT2G37780 0.0390 0.646 0.413 0.64 Cysteine/Histidine-rich C1 domain family protein
AT1G56270 0.0009 0.401 0.258 0.63 unknown protein; Has 38 Blast hits to 38 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT4G24780 0.0193 8.605 13.272 -0.63 Pectin lyase-like superfamily protein
AT3G12520 0.0007 2.118 3.284 -0.63 sulfate transporter 4;2
AT3G03520 0.0166 0.745 0.481 0.63 non-specific phospholipase C3
AT5G39785 0.0436 0.404 0.262 0.63 Protein of unknown function (DUF1666)
AT2G40680 0.0199 0.183 0.118 0.63 transposable element gene
AT1G13940 0.0371 1.38 0.9 0.62 Plant protein of unknown function (DUF863)
AT5G01820 0.0417 2.875 4.405 -0.62 serine/threonine protein kinase 1
AT5G27460 0.0325 1.221 0.795 0.62 Tetratricopeptide repeat (TPR)-like superfamily protein
AT2G04795 0.0499 2.434 1.583 0.62 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits
to 18 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT5G23530 0.0264 0.684 1.051 -0.62 carboxyesterase 18
AT4G21430 0.0407 0.934 1.424 -0.61 Zinc finger
AT4G12910 0.0052 1.67 2.549 -0.61 serine carboxypeptidase-like 20
AT2G18270 0.0158 0.233 0.153 0.61 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
AT2G46650 0.0031 9.052 5.922 0.61 cytochrome B5 isoform C

more...

Metabolites statistics
CID p-value Ex value cnt value Signal ratio Annotation Link
C0137 0.0034 0.890 0.214 2.06 Leucine compound
C0264 0.0031 2.351 0.672 1.81 Valine compound
C0242 0.0457 3.829 1.156 1.73 Suberic acid
C0177 0.0120 8.706 27.448 -1.66 MST_2429.6