4.0:Information of module
Methyl Jasmonate 0.5 h
In comparison with 21h-DC3000 hrpA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009694 jasmonic acid metabolic process BP 2.298e-23
GO:0009611 response to wounding BP 3.250e-21
GO:0009695 jasmonic acid biosynthetic process BP 6.571e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 8.141e-08
GO:0009725 response to hormone BP 3.144e-06
GO:0010033 response to organic substance BP 8.245e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Methyl Jasmonate 0.5 h 		Log2 signal ratio
21h-DC3000 hrpA
1 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 1.489 -0.738
2 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 1.181 -0.576
3 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 1.175 -0.508
4 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 1.157 -0.574
5 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 1.083 -0.227
6 245209_at AT5G12340 unknown 1.031 -0.466
7 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 0.977 -0.257
8 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.843 -0.029
9 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 0.807 -0.167
10 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.787 -0.323
11 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.773 -0.202
12 245252_at AT4G17500 ATERF-1, ethylene responsive element binding factor 1, ERF-1, ethylene responsive element binding factor 1 0.740 -0.066
13 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 0.732 -0.152
14 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.706 -0.222
15 257274_at AT3G14510 [Polyprenyl synthetase family protein] 0.704 0.024
16 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.652 -0.119
17 250149_at AT5G14700 [NAD(P)-binding Rossmann-fold superfamily protein] 0.644 -0.092
18 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.642 -0.290
19 263486_at AT2G22200 [Integrase-type DNA-binding superfamily protein] 0.628 -0.299
20 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 0.620 -0.240
21 261713_at AT1G32640 ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, JASMONATE INSENSITIVE 1, MYC2, RD22BP1, ZBF1 0.616 -0.095
22 262171_at AT1G74950 JAZ2, JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY10B 0.605 -0.166
23 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.602 0.050
24 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.579 -0.201
25 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.575 -0.389
26 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 0.570 0.125
27 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.540 -0.071
28 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.526 -0.369
29 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.510 -0.454
30 245041_at AT2G26530 AR781 0.503 -0.077
31 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 0.489 0.045
32 259725_at AT1G61065 unknown 0.478 -0.072
33 260429_at AT1G72450 JAZ6, jasmonate-zim-domain protein 6, TIFY11B, TIFY DOMAIN PROTEIN 11B 0.475 -0.085
34 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 0.473 -0.187
35 248293_at AT5G53050 [alpha/beta-Hydrolases superfamily protein] 0.466 -0.056
36 263972_at AT2G42760 unknown 0.458 -0.169
37 258189_at AT3G17860 JAI3, JASMONATE-INSENSITIVE 3, JAZ3, jasmonate-zim-domain protein 3, TIFY6B 0.458 -0.101
38 255132_at AT4G08170 [Inositol 1,3,4-trisphosphate 5/6-kinase family protein] 0.450 -0.085
39 249928_at AT5G22250 AtCAF1b, CCR4- associated factor 1b, CAF1b, CCR4- associated factor 1b 0.445 -0.029
40 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] 0.438 -0.093
41 265680_at AT2G32150 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.434 -0.139
42 259568_at AT1G20490 [AMP-dependent synthetase and ligase family protein] 0.404 -0.083
43 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 0.396 -0.053
44 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a 0.390 0.046
45 248509_at AT5G50335 unknown 0.388 -0.040
46 254651_at AT4G18160 ATKCO6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, ATTPK3, KCO6, Ca2+ activated outward rectifying K+ channel 6, TPK3 0.373 -0.030
47 256457_at AT1G75230 [DNA glycosylase superfamily protein] 0.363 -0.097
48 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.386 0.075
49 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.370 -0.008
50 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE -0.335 -0.037
51 253165_at AT4G35320 unknown -0.322 -0.003
52 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 -0.314 -0.086
53 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.311 -0.012
54 247165_at AT5G65790 ATMYB68, MYB DOMAIN PROTEIN 68, MYB68, myb domain protein 68 -0.297 -0.042
55 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.287 0.053
56 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.268 0.010
57 248801_at AT5G47370 HAT2 -0.249 0.031
58 246933_at AT5G25160 ZFP3, zinc finger protein 3 -0.247 0.003
59 251342_at AT3G60690 SAUR59, SMALL AUXIN UPREGULATED RNA 59 -0.237 -0.045
60 246566_at AT5G14940 [Major facilitator superfamily protein] -0.228 -0.008
61 245906_at AT5G11070 unknown -0.227 -0.034
62 259596_at AT1G28130 GH3.17 -0.225 -0.012
63 261717_at AT1G18400 BEE1, BR enhanced expression 1 -0.202 -0.022
64 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.196 0.123
65 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 -0.188 -0.020
66 265872_at AT2G01670 atnudt17, nudix hydrolase homolog 17, NUDT17, nudix hydrolase homolog 17 -0.188 0.020
67 267372_at AT2G26290 ARSK1, root-specific kinase 1 -0.187 -0.025
68 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.180 -0.031
69 253253_at AT4G34750 SAUR49, SMALL AUXIN UPREGULATED RNA 49 -0.180 -0.045
70 256185_at AT1G51700 ADOF1, DOF zinc finger protein 1, DOF1, DOF zinc finger protein 1 -0.173 -0.010
71 249097_at AT5G43520 [Cysteine/Histidine-rich C1 domain family protein] -0.169 0.033
72 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.166 -0.021
73 247543_at AT5G61600 ERF104, ethylene response factor 104 -0.162 0.017
74 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.156 -0.097
75 247057_at AT5G66770 [GRAS family transcription factor] -0.156 0.111
76 257076_at AT3G19680 unknown -0.153 -0.036
77 250620_at AT5G07190 ATS3, seed gene 3 -0.151 -0.043
78 246289_at AT3G56880 [VQ motif-containing protein] -0.150 -0.014
79 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.145 0.035
80 246600_at AT5G14930 SAG101, senescence-associated gene 101 -0.141 0.015
81 259854_at AT1G72200 [RING/U-box superfamily protein] -0.138 -0.053
82 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.136 0.077
83 262166_at AT1G74840 [Homeodomain-like superfamily protein] -0.134 -0.029
84 246395_at AT1G58170 [Disease resistance-responsive (dirigent-like protein) family protein] -0.134 0.030
85 256408_at AT1G66610 [TRAF-like superfamily protein] -0.134 0.014
86 266721_at AT2G03220 ATFT1, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, ATFUT1, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, FT1, fucosyltransferase 1, MUR2, MURUS 2 -0.131 0.067
87 245831_at AT1G48840 unknown -0.131 -0.020
88 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.127 -0.050
89 251533_at AT3G58460 ATRBL11, ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, ATRBL15, RHOMBOID-like protein 15, RBL11, rhomboid-like protein 11, RBL15, RHOMBOID-like protein 15 -0.127 0.004
90 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.123 -0.032
91 248558_at AT5G49990 [Xanthine/uracil permease family protein] -0.122 0.070
92 250983_at AT5G02780 GSTL1, glutathione transferase lambda 1 -0.117 -0.044
93 265892_at AT2G15020 unknown -0.116 -0.003