4.0:Information of module
Methyl Jasmonate 3 h
In comparison with Elevated CO2 AMPLE N DAY help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009694 jasmonic acid metabolic process BP 3.160e-39
GO:0009753 response to jasmonic acid BP 8.254e-38
GO:0009695 jasmonic acid biosynthetic process BP 9.952e-34
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016126 sterol biosynthetic process BP 1.245e-04
GO:0016125 sterol metabolic process BP 1.376e-04
GO:0010817 regulation of hormone levels BP 2.448e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Methyl Jasmonate 3 h 		Log2 signal ratio
Elevated CO2 AMPLE N DAY
1 266989_at AT2G39330 JAL23, jacalin-related lectin 23 1.479 0.260
2 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 1.337 0.377
3 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 1.290 0.018
4 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 1.284 0.040
5 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.276 0.647
6 256577_at AT3G28220 [TRAF-like family protein] 1.258 0.156
7 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 1.232 -0.005
8 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] 1.223 0.195
9 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 1.178 0.183
10 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 1.143 0.261
11 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 1.120 0.308
12 254773_at AT4G13410 ATCSLA15, CSLA15, CELLULOSE SYNTHASE LIKE A15 1.107 0.330
13 249071_at AT5G44050 [MATE efflux family protein] 1.090 -0.063
14 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 1.079 0.205
15 256527_at AT1G66100 [Plant thionin] 1.076 -0.027
16 255527_at AT4G02360 unknown 1.069 0.127
17 256603_at AT3G28270 unknown 1.051 -0.014
18 267425_at AT2G34810 [FAD-binding Berberine family protein] 1.042 0.197
19 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 1.038 0.187
20 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 1.001 0.021
21 264415_at AT1G43160 RAP2.6, related to AP2 6 0.947 0.011
22 263031_at AT1G24070 ATCSLA10, cellulose synthase-like A10, CSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, cellulose synthase-like A10 0.940 0.223
23 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.929 -0.068
24 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 0.909 0.037
25 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 0.898 0.115
26 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 0.897 0.033
27 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 0.881 0.013
28 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.842 0.078
29 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 0.833 0.000
30 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.831 0.047
31 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.821 0.157
32 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 0.817 0.026
33 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] 0.810 0.192
34 250455_at AT5G09980 PROPEP4, elicitor peptide 4 precursor 0.807 0.065
35 249971_at AT5G19110 [Eukaryotic aspartyl protease family protein] 0.792 0.040
36 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.790 0.054
37 247175_at AT5G65280 GCL1, GCR2-like 1 0.789 0.108
38 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.788 0.111
39 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] 0.776 0.040
40 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.775 0.064
41 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.766 0.210
42 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.761 0.191
43 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.746 0.029
44 247047_at AT5G66650 unknown 0.745 0.059
45 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.736 0.283
46 259568_at AT1G20490 [AMP-dependent synthetase and ligase family protein] 0.722 -0.039
47 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 0.716 0.080
48 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 0.711 0.058
49 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] 0.698 0.322
50 260237_at AT1G74430 ATMYB95, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 95, ATMYBCP66, ARABIDOPSIS THALIANA MYB DOMAIN CONTAINING PROTEIN 66, MYB95, myb domain protein 95 0.696 0.032
51 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.693 0.049
52 245550_at AT4G15330 CYP705A1, cytochrome P450, family 705, subfamily A, polypeptide 1 0.686 -0.005
53 251480_at AT3G59710 [NAD(P)-binding Rossmann-fold superfamily protein] 0.679 -0.055
54 264636_at AT1G65490 unknown -0.517 0.032
55 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA -0.468 0.177
56 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 -0.418 -0.045
57 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.388 0.039
58 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.374 -0.112
59 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.363 -0.018
60 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.352 -0.011
61 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR -0.348 -0.020
62 259801_at AT1G72230 [Cupredoxin superfamily protein] -0.303 -0.103
63 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.281 -0.002
64 262388_at AT1G49320 unknown -0.280 -0.085
65 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.265 0.048
66 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.260 -0.159
67 253437_at AT4G32460 unknown -0.259 -0.037
68 265083_at AT1G03820 unknown -0.258 0.087
69 248273_at AT5G53500 [Transducin/WD40 repeat-like superfamily protein] -0.249 -0.047
70 266324_at AT2G46710 ROPGAP3, ROP guanosine triphosphatase (GTPase)-activating protein 3 -0.242 -0.069
71 252037_at AT3G51920 ATCML9, CAM9, calmodulin 9, CML9, CALMODULIN LIKE PROTEIN 9 -0.238 0.001
72 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.236 0.058
73 267590_at AT2G39700 ATEXP4, ATEXPA4, expansin A4, ATHEXP ALPHA 1.6, EXPA4, expansin A4 -0.236 -0.026
74 261834_at AT1G10640 [Pectin lyase-like superfamily protein] -0.226 -0.070
75 264978_at AT1G27120 [Galactosyltransferase family protein] -0.211 -0.079
76 249885_at AT5G22940 F8H, FRA8 homolog -0.210 0.032
77 254119_at AT4G24780 [Pectin lyase-like superfamily protein] -0.209 -0.032
78 246275_at AT4G36540 BEE2, BR enhanced expression 2 -0.207 -0.051
79 255926_at AT1G22190 RAP2.4, related to AP2 4 -0.207 0.002
80 264434_at AT1G10340 [Ankyrin repeat family protein] -0.206 0.182
81 255852_at AT1G66970 GDPDL1, Glycerophosphodiester phosphodiesterase (GDPD) like 1, SVL2, SHV3-like 2 -0.200 0.032
82 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] -0.199 -0.111
83 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -0.196 -0.023
84 254543_at AT4G19810 ChiC, class V chitinase -0.195 0.005
85 252126_at AT3G50950 ZAR1, HOPZ-ACTIVATED RESISTANCE 1 -0.185 0.054
86 256525_at AT1G66180 [Eukaryotic aspartyl protease family protein] -0.182 0.014
87 246387_at AT1G77400 unknown -0.181 -0.091
88 263677_at AT1G04520 PDLP2, plasmodesmata-located protein 2 -0.180 -0.064
89 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 -0.179 0.084
90 247049_at AT5G66440 unknown -0.172 0.030
91 266007_at AT2G37380 MAKR3, MEMBRANE-ASSOCIATED KINASE REGULATOR 3 -0.170 -0.050
92 256237_at AT3G12610 DRT100, DNA-DAMAGE REPAIR/TOLERATION 100 -0.166 0.012
93 248003_at AT5G56220 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.164 -0.070
94 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.161 -0.058
95 252943_at AT4G39330 ATCAD9, CAD9, cinnamyl alcohol dehydrogenase 9 -0.156 -0.040
96 256336_at AT1G72030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.156 -0.037
97 253185_at AT4G35240 unknown -0.155 -0.013
98 255617_at AT4G01330 [Protein kinase superfamily protein] -0.152 -0.075
99 267359_at AT2G40020 [Nucleolar histone methyltransferase-related protein] -0.148 -0.020
100 261598_at AT1G49750 [Leucine-rich repeat (LRR) family protein] -0.148 0.009
101 264788_at AT2G17880 DJC24, DNA J protein C24 -0.148 -0.038
102 253915_at AT4G27280 [Calcium-binding EF-hand family protein] -0.146 0.146
103 252343_at AT3G48610 NPC6, non-specific phospholipase C6 -0.144 -0.082
104 264900_at AT1G23080 ATPIN7, ARABIDOPSIS PIN-FORMED 7, PIN7, PIN-FORMED 7 -0.143 -0.065
105 262039_at AT1G80050 APT2, adenine phosphoribosyl transferase 2, ATAPT2, PHT1.1 -0.142 -0.018