4.0:Information of module
GA3 3 h (ga1)
In comparison with root - 04% oxygen - 2h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045489 pectin biosynthetic process BP 1.002e-04
GO:0010393 galacturonan metabolic process BP 1.875e-04
GO:0045488 pectin metabolic process BP 1.875e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009739 response to gibberellin BP 1.495e-07
GO:0009718 anthocyanin-containing compound biosynth... BP 2.480e-06
GO:1901700 response to oxygen-containing compound BP 7.027e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
GA3 3 h (ga1)		 Log2 signal ratio
root - 04% oxygen - 2h
1 264527_at AT1G30760 [FAD-binding Berberine family protein] 0.306 -0.021
2 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 0.297 0.022
3 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.266 -0.133
4 256799_at AT3G18560 unknown 0.254 -0.039
5 249008_at AT5G44680 [DNA glycosylase superfamily protein] 0.248 0.019
6 258091_at AT3G14560 unknown 0.238 -0.142
7 252537_at AT3G45710 [Major facilitator superfamily protein] 0.233 0.027
8 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.224 -0.031
9 265454_at AT2G46530 ARF11, auxin response factor 11 0.196 0.018
10 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] 0.178 -0.021
11 258552_at AT3G07010 [Pectin lyase-like superfamily protein] 0.176 -0.048
12 247954_at AT5G56870 BGAL4, beta-galactosidase 4 0.166 -0.016
13 259149_at AT3G10340 PAL4, phenylalanine ammonia-lyase 4 0.161 -0.041
14 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.160 -0.033
15 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.149 -0.001
16 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.147 0.017
17 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 0.142 0.027
18 263208_at AT1G10480 ZFP5, zinc finger protein 5 0.135 -0.032
19 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.130 -0.009
20 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.128 -0.055
21 247832_at AT5G58550 EOL2, ETO1-like 2 0.125 0.003
22 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.124 0.022
23 246686_at AT5G33380 unknown 0.123 -0.082
24 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.121 -0.051
25 266209_at AT2G27550 ATC, centroradialis 0.120 -0.102
26 266798_at AT2G22850 AtbZIP6, basic leucine-zipper 6, bZIP6, basic leucine-zipper 6 0.118 -0.096
27 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.113 -0.033
28 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.112 -0.051
29 255605_at AT4G01090 unknown 0.110 0.050
30 264610_at AT1G04645 [Plant self-incompatibility protein S1 family] 0.110 0.004
31 254756_at AT4G13235 EDA21, embryo sac development arrest 21 0.108 0.075
32 253554_at AT4G30940 [BTB/POZ domain with WD40/YVTN repeat-like protein] 0.104 -0.007
33 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 0.100 -0.027
34 267393_at AT2G44500 [O-fucosyltransferase family protein] 0.097 0.047
35 247605_at AT5G60970 TCP5, TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 0.097 -0.042
36 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.096 -0.053
37 259443_at AT1G02360 [Chitinase family protein] 0.094 0.009
38 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 -0.656 -0.187
39 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 -0.470 -0.047
40 261866_at AT1G50420 SCL-3, SCARECROW-LIKE 3, SCL3, scarecrow-like 3 -0.431 0.061
41 251200_at AT3G63010 ATGID1B, GID1B, GA INSENSITIVE DWARF1B -0.356 0.023
42 247212_at AT5G65040 unknown -0.354 0.025
43 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 -0.274 -0.069
44 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 -0.270 -0.085
45 262001_at AT1G33790 [jacalin lectin family protein] -0.268 0.063
46 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.268 0.001
47 248961_at AT5G45650 [subtilase family protein] -0.261 -0.041
48 259302_at AT3G05120 ATGID1A, GA INSENSITIVE DWARF1A, GID1A, GA INSENSITIVE DWARF1A -0.251 0.134
49 245341_at AT4G16447 unknown -0.247 0.007
50 263325_at AT2G04240 XERICO -0.227 0.027
51 250252_at AT5G13750 ZIFL1, zinc induced facilitator-like 1 -0.211 -0.071
52 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 -0.208 -0.009
53 254293_at AT4G23060 IQD22, IQ-domain 22 -0.206 0.121
54 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 -0.204 0.002
55 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.201 -0.026
56 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 -0.196 0.302
57 248759_at AT5G47610 [RING/U-box superfamily protein] -0.195 -0.000
58 251983_at AT3G53210 UMAMIT6, Usually multiple acids move in and out Transporters 6 -0.195 0.006
59 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.193 0.002
60 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 -0.191 -0.024
61 262748_at AT1G28610 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.191 -0.019
62 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.187 -0.052
63 249136_at AT5G43180 unknown -0.179 -0.016
64 259599_at AT1G28110 SCPL45, serine carboxypeptidase-like 45 -0.176 0.023
65 249361_at AT5G40540 [Protein kinase superfamily protein] -0.175 -0.031
66 249955_at AT5G18840 [Major facilitator superfamily protein] -0.173 0.024
67 247628_at AT5G60400 unknown -0.170 0.012
68 255675_at AT4G00480 ATMYC1, myc1 -0.166 0.088
69 264191_at AT1G54730 [Major facilitator superfamily protein] -0.163 0.018
70 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.162 0.005
71 254160_at AT4G24210 SLY1, SLEEPY1 -0.161 0.029
72 248271_at AT5G53420 [CCT motif family protein] -0.159 0.045
73 259308_at AT3G05180 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.157 -0.011