4.0:Information of module
Mutant ga1-5
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 6.154e-13
GO:0008202 steroid metabolic process BP 3.640e-10
GO:0050896 response to stimulus BP 3.699e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043207 response to external biotic stimulus BP 5.183e-19
GO:0051707 response to other organism BP 5.183e-19
GO:0009607 response to biotic stimulus BP 5.881e-19
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant ga1-5		 Log2 signal ratio
bri1-116
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 1.015 0.098
2 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 0.839 -0.319
3 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.668 0.019
4 249053_at AT5G44440 [FAD-binding Berberine family protein] 0.659 0.091
5 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.645 0.130
6 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.558 0.396
7 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.552 -0.133
8 247431_at AT5G62520 SRO5, similar to RCD one 5 0.542 -0.007
9 259831_at AT1G69600 ATHB29, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, ZFHD1, zinc finger homeodomain 1, ZHD11, ZINC FINGER HOMEODOMAIN 11 0.532 -0.129
10 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 0.487 -0.235
11 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.473 -0.016
12 254451_at AT4G21090 ATMFDX2, ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MFDX2, MITOCHONDRIAL FERREDOXIN 2 0.455 0.098
13 257143_at AT3G20110 CYP705A20, cytochrome P450, family 705, subfamily A, polypeptide 20 0.436 0.003
14 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.430 0.094
15 251838_at AT3G54940 [Papain family cysteine protease] 0.429 -0.210
16 259167_at AT3G01570 [Oleosin family protein] 0.421 0.008
17 245556_at AT4G15400 ABS1, ABNORMAL SHOOT 1, BIA1, BRASSINOSTEROID INACTIVATOR1 0.420 -0.094
18 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.364 -0.023
19 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 0.360 0.184
20 251654_at AT3G57140 SDP1-LIKE, sugar-dependent 1-like 0.359 -0.212
21 247760_at AT5G59130 [Subtilase family protein] 0.358 -0.055
22 266895_at AT2G26040 PYL2, PYR1-like 2, RCAR14, regulatory components of ABA receptor 14 0.358 0.182
23 252834_at AT4G40070 [RING/U-box superfamily protein] 0.357 -0.197
24 245979_at AT5G13150 ATEXO70C1, exocyst subunit exo70 family protein C1, EXO70C1, exocyst subunit exo70 family protein C1 0.355 0.101
25 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.344 0.059
26 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.342 -0.294
27 262751_at AT1G16310 [Cation efflux family protein] 0.335 -0.088
28 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A 0.327 0.183
29 266125_at AT2G45050 GATA2, GATA transcription factor 2 0.326 0.243
30 264580_at AT1G05340 unknown 0.326 -0.039
31 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] 0.326 -0.026
32 256923_at AT3G29635 [HXXXD-type acyl-transferase family protein] 0.326 0.065
33 252010_at AT3G52740 unknown 0.321 0.121
34 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.310 -0.233
35 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.308 0.100
36 263947_at AT2G35820 [ureidoglycolate hydrolases] 0.307 0.125
37 255858_at AT1G67030 ZFP6, zinc finger protein 6 0.301 -0.244
38 246913_at AT5G25830 GATA12, GATA transcription factor 12 0.297 -0.059
39 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.296 0.023
40 245262_at AT4G16563 [Eukaryotic aspartyl protease family protein] 0.295 -0.061
41 265345_at AT2G22680 WAVH1, WAV3 homolog 1 0.292 -0.043
42 255862_at AT2G30300 [Major facilitator superfamily protein] 0.291 -0.008
43 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 0.284 -0.063
44 262940_at AT1G79520 [Cation efflux family protein] 0.282 -0.171
45 259854_at AT1G72200 [RING/U-box superfamily protein] 0.276 -0.168
46 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.274 -0.201
47 261624_at AT1G02000 GAE2, UDP-D-glucuronate 4-epimerase 2 0.271 -0.084
48 255521_at AT4G02280 ATSUS3, SUS3, sucrose synthase 3 0.270 0.080
49 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.269 -0.279
50 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.265 -0.129
51 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 0.265 -0.598
52 247091_at AT5G66390 PRX72, PEROXIDASE 72 0.264 -0.281
53 264169_at AT1G02020 [nitroreductase family protein] 0.264 0.059
54 259433_at AT1G01570 [FUNCTIONS IN: transferase activity, transferring glycosyl groups] 0.254 0.133
55 247030_at AT5G67210 IRX15-L, IRX15-LIKE 0.252 -0.189
56 257197_at AT3G23800 SBP3, selenium-binding protein 3 0.242 -0.131
57 267207_at AT2G30840 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.241 -0.139
58 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.241 0.070
59 263208_at AT1G10480 ZFP5, zinc finger protein 5 0.240 -0.015
60 253401_at AT4G32870 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.239 -0.233
61 249848_at AT5G23220 NIC3, nicotinamidase 3 0.237 -0.152
62 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 0.233 -0.278
63 257823_at AT3G25190 [Vacuolar iron transporter (VIT) family protein] 0.233 0.029
64 262364_at AT1G72860 [Disease resistance protein (TIR-NBS-LRR class) family] 0.225 0.035
65 263496_at AT2G42570 TBL39, TRICHOME BIREFRINGENCE-LIKE 39 0.223 -0.130
66 245196_at AT1G67750 [Pectate lyase family protein] 0.223 -0.230
67 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] 0.222 -0.108
68 249134_at AT5G43150 unknown 0.221 -0.089
69 246872_at AT5G26080 [proline-rich family protein] 0.219 0.107
70 247476_at AT5G62330 unknown 0.218 0.009
71 261514_at AT1G71870 [MATE efflux family protein] 0.218 0.103
72 256664_at AT3G12040 [DNA-3-methyladenine glycosylase (MAG)] 0.218 -0.248
73 260557_at AT2G43610 [Chitinase family protein] 0.217 -0.195
74 258257_at AT3G26770 [NAD(P)-binding Rossmann-fold superfamily protein] 0.213 0.154
75 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.211 -0.057
76 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.211 -0.229
77 246814_at AT5G27200 ACP5, acyl carrier protein 5 0.210 0.068
78 253786_at AT4G28650 [Leucine-rich repeat transmembrane protein kinase family protein] 0.210 -0.247
79 250937_at AT5G03230 unknown 0.208 0.183
80 245209_at AT5G12340 unknown 0.207 -0.048
81 253454_at AT4G31875 unknown 0.207 -0.053
82 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.205 -0.008
83 260461_at AT1G10980 [Lung seven transmembrane receptor family protein] 0.205 0.008
84 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.205 -0.715
85 252172_at AT3G50640 unknown 0.204 -0.373
86 253100_at AT4G37400 CYP81F3, cytochrome P450, family 81, subfamily F, polypeptide 3 0.204 -0.169
87 245710_at AT5G04330 CYP84A4, CYTOCHROME P450 84A4 0.203 -0.064
88 261048_at AT1G01420 UGT72B3, UDP-glucosyl transferase 72B3 0.202 0.155
89 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] 0.201 0.148
90 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 0.200 -0.194
91 245382_at AT4G17800 AHL23, AT-hook motif nuclear localized protein 23 0.199 -0.181
92 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 0.199 -0.217
93 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A -1.409 -0.042
94 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 -1.114 -0.015
95 264635_at AT1G65500 unknown -1.050 -0.190
96 247573_at AT5G61160 AACT1, anthocyanin 5-aromatic acyltransferase 1 -0.893 -0.056
97 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.852 -0.186
98 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 -0.829 -0.173
99 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -0.806 -0.347
100 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.800 -0.136
101 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.799 -0.172
102 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A -0.741 -0.268
103 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana -0.730 -0.203
104 248186_at AT5G53880 unknown -0.697 0.041
105 245460_at AT4G16990 RLM3, RESISTANCE TO LEPTOSPHAERIA MACULANS 3 -0.662 0.101
106 260419_at AT1G69730 [Wall-associated kinase family protein] -0.628 0.153
107 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 -0.626 0.156
108 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.614 -0.019
109 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.612 -0.352
110 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 -0.582 -0.132
111 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.549 0.035
112 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.538 -0.177
113 264636_at AT1G65490 unknown -0.535 0.172
114 253414_at AT4G33050 AtIQM1, EDA39, embryo sac development arrest 39, IQM1, IQ-motif protein 1 -0.520 0.021
115 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.511 -0.023
116 256366_at AT1G66880 [Protein kinase superfamily protein] -0.490 -0.027
117 247314_at AT5G64000 ATSAL2, SAL2 -0.486 0.016
118 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.458 -0.105
119 249309_at AT5G41410 BEL1, BELL 1 -0.457 -0.126
120 252573_at AT3G45260 [C2H2-like zinc finger protein] -0.454 0.156
121 261021_at AT1G26380 [FAD-binding Berberine family protein] -0.453 -0.257
122 267076_at AT2G41090 [Calcium-binding EF-hand family protein] -0.448 -0.025
123 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 -0.444 0.005
124 255128_at AT4G08310 unknown -0.444 -0.027
125 262507_at AT1G11330 [S-locus lectin protein kinase family protein] -0.443 0.146
126 252612_at AT3G45160 [Putative membrane lipoprotein] -0.432 0.306
127 264767_at AT1G61380 SD1-29, S-domain-1 29 -0.416 0.028
128 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.406 0.084
129 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.406 0.412
130 266537_at AT2G16860 [GCIP-interacting family protein] -0.402 0.010
131 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 -0.396 -0.038
132 247733_at AT5G59610 DJC73, DNA J protein C73 -0.396 0.041
133 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] -0.392 -0.252
134 245765_at AT1G33600 [Leucine-rich repeat (LRR) family protein] -0.391 0.029
135 260296_at AT1G63750 [Disease resistance protein (TIR-NBS-LRR class) family] -0.383 0.228
136 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.381 0.465
137 245096_at AT2G40880 ATCYSA, cystatin A, CYSA, cystatin A, FL3-27 -0.371 0.035
138 254948_at AT4G11000 [Ankyrin repeat family protein] -0.371 0.037
139 250066_at AT5G17930 [MIF4G domain-containing protein / MA3 domain-containing protein] -0.365 0.082
140 253897_at AT4G27120 unknown -0.365 0.027
141 255070_at AT4G09020 ATISA3, ISA3, isoamylase 3 -0.353 0.159
142 263544_at AT2G21590 APL4 -0.353 0.070
143 262996_at AT1G54440 [Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain] -0.352 0.102
144 256922_at AT3G19010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.348 -0.056
145 262194_at AT1G77930 DJC65, DNA J protein C65 -0.348 -0.088
146 254964_at AT4G11080 3xHMG-box1, 3xHigh Mobility Group-box1 -0.345 0.058
147 252462_at AT3G47250 unknown -0.341 0.351
148 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.334 -0.046
149 249481_at AT5G38900 [Thioredoxin superfamily protein] -0.330 -0.195
150 261557_at AT1G63640 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.328 -0.149
151 256676_at AT3G52180 ATPTPKIS1, ATSEX4, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4 -0.327 0.056
152 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.326 -0.843
153 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.323 0.037
154 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.322 -0.092
155 244938_at ATCG01120 RPS15, chloroplast ribosomal protein S15 -0.321 -0.132
156 260251_at AT1G74250 [DNAJ heat shock N-terminal domain-containing protein] -0.320 -0.147
157 260601_at AT1G55910 ZIP11, zinc transporter 11 precursor -0.317 -0.136
158 248271_at AT5G53420 [CCT motif family protein] -0.310 0.042
159 249010_at AT5G44580 unknown -0.307 0.052
160 255429_at AT4G03410 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.306 0.099
161 260981_at AT1G53460 unknown -0.305 0.212
162 248276_at AT5G53550 ATYSL3, YELLOW STRIPE LIKE 3, YSL3, YELLOW STRIPE like 3 -0.305 -0.004
163 247878_at AT5G57760 unknown -0.304 0.069
164 266993_at AT2G39210 [Major facilitator superfamily protein] -0.304 -0.181
165 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase -0.303 -0.015
166 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 -0.299 0.098
167 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.298 -0.170
168 260656_at AT1G19380 unknown -0.294 0.080
169 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 -0.290 0.115
170 256969_at AT3G21080 [ABC transporter-related] -0.283 0.027
171 259642_at AT1G69030 [BSD domain-containing protein] -0.282 -0.130
172 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.282 -0.045
173 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 -0.281 0.203
174 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 -0.278 -0.125
175 255171_at AT4G07990 [Chaperone DnaJ-domain superfamily protein] -0.273 -0.043
176 254543_at AT4G19810 ChiC, class V chitinase -0.273 -0.012
177 252502_at AT3G46900 COPT2, copper transporter 2 -0.271 -0.017
178 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.270 0.216
179 254737_at AT4G13840 CER26, ECERIFERUM 26 -0.270 0.178
180 265627_at AT2G27285 [Coiled-coil domain-containing protein 55 (DUF2040)] -0.262 -0.047
181 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 -0.260 0.077
182 263715_at AT2G20570 GBF's pro-rich region-interacting factor 1 -0.259 0.253
183 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.258 -0.287