4.0:Information of module
Dark 44min pls RedLigh 1min
In comparison with 2d red light grown pif1pif3pif4pif5 (pifq) mutant help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.248e-31
GO:0009416 response to light stimulus BP 4.417e-22
GO:0009314 response to radiation BP 1.543e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 1.034e-11
GO:0009719 response to endogenous stimulus BP 3.741e-11
GO:0009733 response to auxin BP 2.380e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Dark 44min pls RedLigh 1min 		Log2 signal ratio
2d red light grown pif1pif3pif4pif5 (pifq) mutant
1 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.669 -0.056
2 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.593 0.120
3 257262_at AT3G21890 BBX31, B-box domain protein 31 0.569 0.077
4 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.549 0.082
5 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.535 0.039
6 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.534 -0.045
7 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.518 0.188
8 261958_at AT1G64500 [Glutaredoxin family protein] 0.493 0.166
9 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.490 0.043
10 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.487 0.012
11 258609_at AT3G02910 [AIG2-like (avirulence induced gene) family protein] 0.485 0.041
12 254839_at AT4G12400 Hop3, Hop3 0.470 -0.013
13 246966_at AT5G24850 CRY3, cryptochrome 3 0.468 0.051
14 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.440 0.085
15 263374_at AT2G20560 [DNAJ heat shock family protein] 0.439 0.016
16 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 0.433 0.073
17 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 0.427 0.065
18 263739_at AT2G21320 BBX18, B-box domain protein 18 0.420 -0.024
19 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.418 0.088
20 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 0.416 -0.009
21 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.409 0.040
22 256097_at AT1G13670 unknown 0.395 -0.024
23 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.380 0.086
24 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.377 0.030
25 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.373 -0.003
26 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.370 -0.018
27 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.367 0.021
28 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN 0.362 0.003
29 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.349 -0.022
30 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.348 -0.040
31 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.347 0.061
32 250099_at AT5G17300 RVE1, REVEILLE 1 0.342 0.115
33 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.340 -0.054
34 264314_at AT1G70420 unknown 0.340 0.038
35 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 0.339 -0.049
36 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.333 0.019
37 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.332 0.056
38 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.331 0.139
39 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.329 0.471
40 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE 0.326 0.034
41 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 0.324 0.045
42 258349_at AT3G17609 HYH, HY5-homolog 0.314 -0.004
43 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.306 0.047
44 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.302 0.083
45 251012_at AT5G02580 unknown -0.572 -0.292
46 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.561 0.011
47 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.482 0.014
48 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] -0.413 -0.095
49 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.372 -0.268
50 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.364 0.017
51 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.356 -0.409
52 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.352 -0.084
53 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.333 0.150
54 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] -0.323 -0.057
55 251374_at AT3G60390 HAT3, homeobox-leucine zipper protein 3 -0.314 -0.026
56 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] -0.272 -0.061
57 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.265 -0.062
58 248213_at AT5G53660 AtGRF7, growth-regulating factor 7, GRF7, growth-regulating factor 7 -0.261 -0.055
59 263151_at AT1G54120 unknown -0.258 -0.050
60 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.258 -0.019
61 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.253 -0.145
62 251058_at AT5G01790 unknown -0.239 -0.054
63 255064_at AT4G08950 EXO, EXORDIUM -0.238 0.026
64 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.235 0.006
65 245439_at AT4G16670 unknown -0.225 -0.075
66 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 -0.218 -0.050
67 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.207 0.122
68 246997_at AT5G67390 unknown -0.206 -0.058
69 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.194 -0.064
70 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.191 0.065
71 245328_at AT4G14465 AHL20, AT-hook motif nuclear-localized protein 20 -0.190 0.017
72 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.186 0.091
73 255942_at AT1G22360 AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2, UDP-glucosyl transferase 85A2 -0.184 -0.026
74 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -0.172 -0.073
75 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.170 -0.130
76 261658_at AT1G50040 unknown -0.170 -0.001
77 266125_at AT2G45050 GATA2, GATA transcription factor 2 -0.168 -0.031
78 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.167 -0.004
79 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 -0.167 -0.120
80 245362_at AT4G17460 HAT1, JAB, JAIBA -0.162 -0.097
81 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.162 -0.063
82 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.158 -0.045
83 245076_at AT2G23170 GH3.3 -0.158 -0.168
84 257858_at AT3G12920 BRG3, BOI-related gene 3 -0.156 -0.004
85 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] -0.152 -0.026
86 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.151 -0.139
87 265877_at AT2G42380 ATBZIP34, BZIP34 -0.150 -0.005