4.0:Information of module
Dark 44min pls RedLigh 1min
In comparison with aerial organ callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.248e-31
GO:0009416 response to light stimulus BP 4.417e-22
GO:0009314 response to radiation BP 1.543e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 1.034e-11
GO:0009719 response to endogenous stimulus BP 3.741e-11
GO:0009733 response to auxin BP 2.380e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Dark 44min pls RedLigh 1min 		Log2 signal ratio
aerial organ callus inducing medium 12 h
1 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.669 -0.458
2 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.593 0.266
3 257262_at AT3G21890 BBX31, B-box domain protein 31 0.569 -0.441
4 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.549 -0.803
5 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.535 -0.091
6 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.534 -0.007
7 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.518 0.482
8 261958_at AT1G64500 [Glutaredoxin family protein] 0.493 -0.808
9 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.490 -0.083
10 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.487 -0.567
11 258609_at AT3G02910 [AIG2-like (avirulence induced gene) family protein] 0.485 -0.125
12 254839_at AT4G12400 Hop3, Hop3 0.470 -0.180
13 246966_at AT5G24850 CRY3, cryptochrome 3 0.468 -0.395
14 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.440 -0.520
15 263374_at AT2G20560 [DNAJ heat shock family protein] 0.439 -0.126
16 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 0.433 -0.259
17 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 0.427 -0.305
18 263739_at AT2G21320 BBX18, B-box domain protein 18 0.420 -0.770
19 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.418 -0.180
20 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 0.416 -0.171
21 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.409 -0.119
22 256097_at AT1G13670 unknown 0.395 0.098
23 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.380 -0.510
24 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.377 -0.341
25 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.373 -0.595
26 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.370 -0.234
27 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.367 0.038
28 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN 0.362 -0.587
29 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.349 -0.119
30 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.348 0.051
31 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.347 -0.558
32 250099_at AT5G17300 RVE1, REVEILLE 1 0.342 -1.009
33 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.340 0.100
34 264314_at AT1G70420 unknown 0.340 0.162
35 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 0.339 -0.247
36 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.333 0.125
37 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.332 0.174
38 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.331 -0.255
39 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.329 -0.835
40 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE 0.326 -0.560
41 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 0.324 -0.090
42 258349_at AT3G17609 HYH, HY5-homolog 0.314 -0.938
43 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.306 0.090
44 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.302 -0.174
45 251012_at AT5G02580 unknown -0.572 0.905
46 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.561 0.132
47 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.482 0.030
48 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] -0.413 0.621
49 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.372 -0.158
50 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.364 0.336
51 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.356 0.615
52 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.352 0.454
53 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.333 0.585
54 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] -0.323 0.057
55 251374_at AT3G60390 HAT3, homeobox-leucine zipper protein 3 -0.314 0.028
56 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] -0.272 0.133
57 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.265 -0.135
58 248213_at AT5G53660 AtGRF7, growth-regulating factor 7, GRF7, growth-regulating factor 7 -0.261 0.518
59 263151_at AT1G54120 unknown -0.258 0.100
60 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.258 0.191
61 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.253 0.458
62 251058_at AT5G01790 unknown -0.239 0.113
63 255064_at AT4G08950 EXO, EXORDIUM -0.238 0.048
64 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.235 0.125
65 245439_at AT4G16670 unknown -0.225 0.401
66 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 -0.218 0.023
67 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.207 -0.030
68 246997_at AT5G67390 unknown -0.206 0.177
69 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.194 0.285
70 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.191 0.589
71 245328_at AT4G14465 AHL20, AT-hook motif nuclear-localized protein 20 -0.190 0.229
72 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.186 0.123
73 255942_at AT1G22360 AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2, UDP-glucosyl transferase 85A2 -0.184 0.163
74 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -0.172 0.511
75 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.170 0.238
76 261658_at AT1G50040 unknown -0.170 0.178
77 266125_at AT2G45050 GATA2, GATA transcription factor 2 -0.168 0.330
78 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.167 0.159
79 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 -0.167 0.074
80 245362_at AT4G17460 HAT1, JAB, JAIBA -0.162 -0.199
81 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.162 -0.021
82 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.158 0.214
83 245076_at AT2G23170 GH3.3 -0.158 0.764
84 257858_at AT3G12920 BRG3, BOI-related gene 3 -0.156 0.065
85 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] -0.152 -0.018
86 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.151 0.159
87 265877_at AT2G42380 ATBZIP34, BZIP34 -0.150 -0.194