4.0:Information of module
Dark 44min pls RedLigh 1min
In comparison with NJ15 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.248e-31
GO:0009416 response to light stimulus BP 4.417e-22
GO:0009314 response to radiation BP 1.543e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 1.034e-11
GO:0009719 response to endogenous stimulus BP 3.741e-11
GO:0009733 response to auxin BP 2.380e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Dark 44min pls RedLigh 1min 		Log2 signal ratio
NJ15
1 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.669 0.041
2 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.593 0.092
3 257262_at AT3G21890 BBX31, B-box domain protein 31 0.569 -0.008
4 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.549 -0.092
5 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.535 -0.120
6 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.534 -0.009
7 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.518 0.008
8 261958_at AT1G64500 [Glutaredoxin family protein] 0.493 -0.009
9 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.490 -0.086
10 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.487 0.028
11 258609_at AT3G02910 [AIG2-like (avirulence induced gene) family protein] 0.485 -0.029
12 254839_at AT4G12400 Hop3, Hop3 0.470 0.389
13 246966_at AT5G24850 CRY3, cryptochrome 3 0.468 -0.003
14 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.440 0.080
15 263374_at AT2G20560 [DNAJ heat shock family protein] 0.439 0.497
16 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 0.433 -0.016
17 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 0.427 0.014
18 263739_at AT2G21320 BBX18, B-box domain protein 18 0.420 -0.012
19 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.418 0.445
20 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 0.416 0.007
21 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.409 0.199
22 256097_at AT1G13670 unknown 0.395 -0.133
23 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.380 0.018
24 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.377 0.063
25 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.373 0.053
26 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.370 0.326
27 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.367 -0.013
28 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN 0.362 0.026
29 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.349 0.388
30 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.348 0.216
31 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.347 -0.105
32 250099_at AT5G17300 RVE1, REVEILLE 1 0.342 -0.036
33 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.340 0.427
34 264314_at AT1G70420 unknown 0.340 0.118
35 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 0.339 0.056
36 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.333 0.481
37 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.332 0.051
38 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.331 -0.087
39 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.329 -0.100
40 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE 0.326 0.011
41 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 0.324 -0.013
42 258349_at AT3G17609 HYH, HY5-homolog 0.314 0.035
43 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.306 0.154
44 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.302 -0.031
45 251012_at AT5G02580 unknown -0.572 0.005
46 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.561 -0.036
47 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.482 -0.063
48 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] -0.413 0.033
49 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.372 0.045
50 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.364 0.032
51 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.356 -0.170
52 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.352 0.003
53 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.333 0.010
54 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] -0.323 -0.084
55 251374_at AT3G60390 HAT3, homeobox-leucine zipper protein 3 -0.314 -0.014
56 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] -0.272 -0.072
57 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.265 0.002
58 248213_at AT5G53660 AtGRF7, growth-regulating factor 7, GRF7, growth-regulating factor 7 -0.261 -0.028
59 263151_at AT1G54120 unknown -0.258 0.076
60 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.258 0.127
61 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.253 -0.041
62 251058_at AT5G01790 unknown -0.239 -0.017
63 255064_at AT4G08950 EXO, EXORDIUM -0.238 0.023
64 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.235 -0.079
65 245439_at AT4G16670 unknown -0.225 -0.033
66 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 -0.218 -0.010
67 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.207 0.042
68 246997_at AT5G67390 unknown -0.206 -0.015
69 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.194 -0.197
70 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.191 -0.095
71 245328_at AT4G14465 AHL20, AT-hook motif nuclear-localized protein 20 -0.190 0.011
72 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.186 -0.049
73 255942_at AT1G22360 AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2, UDP-glucosyl transferase 85A2 -0.184 0.022
74 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -0.172 0.057
75 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.170 -0.153
76 261658_at AT1G50040 unknown -0.170 0.001
77 266125_at AT2G45050 GATA2, GATA transcription factor 2 -0.168 -0.006
78 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.167 -0.001
79 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 -0.167 0.037
80 245362_at AT4G17460 HAT1, JAB, JAIBA -0.162 -0.089
81 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.162 -0.029
82 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.158 -0.078
83 245076_at AT2G23170 GH3.3 -0.158 0.081
84 257858_at AT3G12920 BRG3, BOI-related gene 3 -0.156 -0.027
85 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] -0.152 -0.043
86 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.151 -0.009
87 265877_at AT2G42380 ATBZIP34, BZIP34 -0.150 -0.071