4.0:Information of module
Red Light 45min
In comparison with Col-0 shade help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 2.016e-13
GO:0009725 response to hormone BP 2.193e-09
GO:0042221 response to chemical BP 3.485e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048527 lateral root development BP 5.220e-03
GO:0048528 post-embryonic root development BP 7.862e-03
GO:0042991 transcription factor import into nucleus BP 8.887e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Red Light 45min 		Log2 signal ratio
Col-0 shade
1 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 0.406 0.555
2 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 0.356 0.303
3 265806_at AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 0.353 0.529
4 254839_at AT4G12400 Hop3, Hop3 0.290 0.018
5 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 0.274 0.734
6 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.256 0.446
7 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.248 0.470
8 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.232 0.462
9 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.208 0.510
10 255774_at AT1G18620 TRM3, TON1 Recruiting Motif 3 0.202 0.021
11 247868_at AT5G57620 AtMYB36, myb domain protein 36, MYB36, myb domain protein 36 0.200 0.011
12 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.192 0.330
13 252765_at AT3G42800 unknown 0.189 0.266
14 247568_at AT5G61260 [Plant calmodulin-binding protein-related] 0.189 -0.055
15 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA 0.173 0.286
16 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.172 0.188
17 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.161 0.701
18 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.158 0.409
19 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.155 0.355
20 262236_at AT1G48330 unknown 0.137 0.029
21 248724_at AT5G47970 [Aldolase-type TIM barrel family protein] 0.132 -0.004
22 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.129 0.085
23 262010_at AT1G35612 [expressed protein] 0.128 -0.029
24 262641_at AT1G62730 [Terpenoid synthases superfamily protein] -0.185 -0.026
25 267294_at AT2G23670 YCF37, homolog of Synechocystis YCF37 -0.177 -0.035
26 255433_at AT4G03210 XTH9, xyloglucan endotransglucosylase/hydrolase 9 -0.136 0.049
27 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 -0.123 -0.007
28 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.121 0.232
29 257587_at AT1G56310 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.119 0.056
30 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E -0.116 -0.064
31 256037_at AT1G19160 [F-box family protein] -0.116 0.055
32 250873_at AT5G03980 [SGNH hydrolase-type esterase superfamily protein] -0.114 0.010
33 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] -0.110 -0.047
34 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 -0.108 0.142
35 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -0.107 0.034
36 255369_at AT4G04080 ATISU3, ISCU-LIKE 3, ISU3, ISCU-like 3 -0.105 0.038
37 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 -0.104 0.011
38 266247_at AT2G27660 [Cysteine/Histidine-rich C1 domain family protein] -0.095 0.022
39 253599_at AT4G30860 ASHR3, ASH1-related 3, SDG4, SET domain group 4 -0.094 -0.031
40 245969_at AT5G19830 [Peptidyl-tRNA hydrolase family protein] -0.092 -0.008
41 249572_at AT5G37630 EMB2656, EMBRYO DEFECTIVE 2656 -0.091 0.030
42 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.090 -0.009
43 259823_at AT1G66250 [O-Glycosyl hydrolases family 17 protein] -0.088 0.029
44 256740_at AT3G29330 unknown -0.088 0.054
45 263955_at AT2G36010 ATE2FA, E2F3, E2F transcription factor 3 -0.086 -0.050