4.0:Information of module
Dark 40 min pls UV-A 5 min
In comparison with root longitudinal zone-4 NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.233e-32
GO:1901700 response to oxygen-containing compound BP 3.157e-26
GO:0050896 response to stimulus BP 1.079e-21
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 2.838e-10
GO:0009719 response to endogenous stimulus BP 6.495e-09
GO:0009725 response to hormone BP 1.208e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Dark 40 min pls UV-A 5 min 		Log2 signal ratio
root longitudinal zone-4 NaCl
1 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.878 0.094
2 254839_at AT4G12400 Hop3, Hop3 0.793 0.108
3 257262_at AT3G21890 BBX31, B-box domain protein 31 0.782 0.353
4 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.775 0.133
5 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.767 0.012
6 260773_at AT1G78440 ATGA2OX1, Arabidopsis thaliana gibberellin 2-oxidase 1, GA2OX1, gibberellin 2-oxidase 1 0.767 -0.001
7 246966_at AT5G24850 CRY3, cryptochrome 3 0.742 -0.058
8 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.687 0.011
9 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.683 -0.033
10 264415_at AT1G43160 RAP2.6, related to AP2 6 0.667 0.230
11 256097_at AT1G13670 unknown 0.648 -0.249
12 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.638 0.124
13 258609_at AT3G02910 [AIG2-like (avirulence induced gene) family protein] 0.635 -0.119
14 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.618 0.082
15 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 0.609 -0.119
16 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.608 -0.312
17 263374_at AT2G20560 [DNAJ heat shock family protein] 0.595 0.129
18 253150_at AT4G35660 unknown 0.595 0.075
19 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 0.588 0.022
20 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.574 0.238
21 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.573 -0.051
22 261958_at AT1G64500 [Glutaredoxin family protein] 0.566 0.046
23 254413_at AT4G21440 ATM4, A. THALIANA MYB 4, ATMYB102, MYB-like 102, MYB102, MYB102, MYB-like 102 0.556 0.044
24 263739_at AT2G21320 BBX18, B-box domain protein 18 0.554 -0.006
25 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.524 0.048
26 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.522 -0.079
27 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.515 0.104
28 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 0.514 0.227
29 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 0.512 0.086
30 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.509 0.093
31 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.500 -0.016
32 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 0.490 -0.093
33 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.490 0.007
34 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 0.467 -0.020
35 245401_at AT4G17670 unknown 0.461 -0.056
36 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.457 -0.023
37 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.454 0.337
38 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.454 0.050
39 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 0.452 0.023
40 246468_at AT5G17050 UGT78D2, UDP-glucosyl transferase 78D2 0.451 -0.045
41 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.448 0.271
42 250099_at AT5G17300 RVE1, REVEILLE 1 0.447 0.352
43 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.444 0.262
44 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE 0.442 0.010
45 264314_at AT1G70420 unknown 0.442 0.065
46 253859_at AT4G27657 unknown 0.441 0.027
47 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.440 -0.068
48 261488_at AT1G14345 [NAD(P)-linked oxidoreductase superfamily protein] 0.439 0.035
49 259460_at AT1G44000 unknown 0.438 -0.008
50 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.436 0.528
51 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.434 0.016
52 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.431 -0.217
53 245904_at AT5G11110 ATSPS2F, sucrose phosphate synthase 2F, KNS2, KAONASHI 2, SPS1, SUCROSE PHOSPHATE SYNTHASE 1, SPS2F, sucrose phosphate synthase 2F, SPSA2, sucrose-phosphate synthase A2 0.424 0.207
54 266299_at AT2G29450 AT103-1A, ATGSTU1, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, ATGSTU5, glutathione S-transferase tau 5, GSTU5, glutathione S-transferase tau 5 0.417 0.094
55 258349_at AT3G17609 HYH, HY5-homolog 0.414 -0.145
56 246947_at AT5G25120 CYP71B11, ytochrome p450, family 71, subfamily B, polypeptide 11 0.414 0.304
57 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.412 0.136
58 263545_at AT2G21560 unknown 0.406 -0.070
59 251811_at AT3G54990 SMZ, SCHLAFMUTZE 0.404 -0.022
60 259379_at AT3G16350 [Homeodomain-like superfamily protein] 0.386 0.038
61 266097_at AT2G37970 AtHBP2, HBP2, haem-binding protein 2, SOUL-1 0.384 0.048
62 248759_at AT5G47610 [RING/U-box superfamily protein] 0.382 -0.023
63 249622_at AT5G37550 unknown 0.379 -0.022
64 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN 0.377 -0.013
65 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.372 0.041
66 257593_at AT3G24840 [Sec14p-like phosphatidylinositol transfer family protein] 0.370 0.049
67 251727_at AT3G56290 unknown 0.369 0.054
68 263128_at AT1G78600 BBX22, B-box domain protein 22, DBB3, DOUBLE B-BOX 3, LZF1, light-regulated zinc finger protein 1, STH3, SALT TOLERANCE HOMOLOG 3 0.369 0.010
69 263787_at AT2G46420 unknown 0.368 0.272
70 248160_at AT5G54470 BBX29, B-box domain protein 29 0.368 0.043
71 266824_at AT2G22800 HAT9 0.365 -0.162
72 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.351 -0.045
73 260481_at AT1G10960 ATFD1, ferredoxin 1, FD1, ferredoxin 1 0.350 0.002
74 257932_at AT3G17040 HCF107, high chlorophyll fluorescent 107 0.350 -0.019
75 261700_at AT1G32690 unknown 0.350 0.025
76 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 0.349 0.139
77 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 0.349 0.397
78 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.347 -0.065
79 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] 0.343 0.370
80 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.343 0.075
81 251644_at AT3G57540 [Remorin family protein] 0.340 0.401
82 251012_at AT5G02580 unknown -0.529 0.077
83 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.500 -0.092
84 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.454 -0.089
85 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.414 -0.022
86 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.399 0.016
87 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.374 0.043
88 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] -0.357 -0.024
89 248213_at AT5G53660 AtGRF7, growth-regulating factor 7, GRF7, growth-regulating factor 7 -0.351 -0.023
90 251374_at AT3G60390 HAT3, homeobox-leucine zipper protein 3 -0.341 -0.046
91 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.340 -0.050
92 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] -0.336 0.013
93 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.334 -0.074
94 246997_at AT5G67390 unknown -0.305 -0.205
95 251058_at AT5G01790 unknown -0.297 -0.169
96 263894_at AT2G21910 CYP96A5, cytochrome P450, family 96, subfamily A, polypeptide 5 -0.290 -0.034
97 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.287 0.068
98 265114_at AT1G62440 LRX2, leucine-rich repeat/extensin 2 -0.287 -0.339
99 260070_at AT1G73830 BEE3, BR enhanced expression 3 -0.282 -0.001
100 266125_at AT2G45050 GATA2, GATA transcription factor 2 -0.281 0.030
101 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.280 0.018
102 252765_at AT3G42800 unknown -0.272 0.048
103 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.266 0.050
104 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 -0.261 0.006
105 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.257 0.109
106 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.254 -0.028
107 250246_at AT5G13700 APAO, ATPAO1, polyamine oxidase 1, PAO1, polyamine oxidase 1 -0.253 0.145
108 255568_at AT4G01250 AtWRKY22, WRKY22 -0.253 0.310
109 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.247 -0.019
110 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -0.246 -0.114
111 252582_at AT3G45530 [Cysteine/Histidine-rich C1 domain family protein] -0.245 -0.179
112 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.243 -0.091
113 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 -0.241 -0.477
114 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.241 -0.039
115 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] -0.241 -0.018
116 251289_at AT3G61830 ARF18, auxin response factor 18 -0.235 0.020
117 253054_at AT4G37580 COP3, CONSTITUTIVE PHOTOMORPHOGENIC 3, HLS1, HOOKLESS 1, UNS2, UNUSUAL SUGAR RESPONSE 2 -0.232 -0.123
118 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.231 -0.045
119 252103_at AT3G51410 unknown -0.230 -0.009
120 245328_at AT4G14465 AHL20, AT-hook motif nuclear-localized protein 20 -0.224 -0.035
121 254876_at AT4G11610 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.224 -0.038
122 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 -0.216 0.087
123 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 -0.216 -0.247
124 257229_at AT3G16490 IQD26, IQ-domain 26 -0.212 -0.010
125 252118_at AT3G51400 unknown -0.210 0.027
126 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.209 0.035
127 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 -0.208 -0.380
128 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 -0.207 0.189
129 245439_at AT4G16670 unknown -0.206 -0.019
130 247087_at AT5G66330 [Leucine-rich repeat (LRR) family protein] -0.202 -0.092
131 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H -0.201 -0.025
132 253155_at AT4G35720 unknown -0.201 0.012
133 263151_at AT1G54120 unknown -0.199 -0.162
134 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.199 -0.117
135 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.194 0.024
136 256602_at AT3G28310 unknown -0.191 -0.000
137 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.191 -0.145
138 259000_at AT3G01860 unknown -0.189 -0.083
139 261042_at AT1G01200 ATRAB-A3, ARABIDOPSIS RAB GTPASE HOMOLOG A3, ATRABA3, RAB GTPase homolog A3, RABA3, RAB GTPase homolog A3 -0.188 -0.135
140 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.187 -0.053
141 254356_at AT4G22190 unknown -0.185 -0.096
142 245076_at AT2G23170 GH3.3 -0.184 -0.320
143 257875_at AT3G17120 unknown -0.184 0.067
144 255064_at AT4G08950 EXO, EXORDIUM -0.184 0.100
145 265877_at AT2G42380 ATBZIP34, BZIP34 -0.183 -0.031
146 263837_at AT2G04500 [Cysteine/Histidine-rich C1 domain family protein] -0.182 -0.181
147 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 -0.177 -0.087
148 256062_at AT1G07090 LSH6, LIGHT SENSITIVE HYPOCOTYLS 6 -0.176 -0.155
149 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN -0.175 0.068
150 261327_at AT1G44830 [Integrase-type DNA-binding superfamily protein] -0.174 -0.008
151 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 -0.172 -0.021
152 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.170 -0.083
153 266873_at AT2G44740 CYCP4;1, cyclin p4;1 -0.170 -0.054
154 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.167 0.039
155 262236_at AT1G48330 unknown -0.166 0.150
156 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.164 0.061
157 253786_at AT4G28650 [Leucine-rich repeat transmembrane protein kinase family protein] -0.164 -0.031
158 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.163 -0.011
159 254902_at AT4G11550 [Cysteine/Histidine-rich C1 domain family protein] -0.161 -0.329
160 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.160 -0.119
161 257858_at AT3G12920 BRG3, BOI-related gene 3 -0.159 0.040