4.0:Information of module
FarRed Light 4 h
In comparison with Col-0 shade help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 1.143e-33
GO:0009411 response to UV BP 6.703e-30
GO:0009813 flavonoid biosynthetic process BP 7.676e-27
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 3.920e-19
GO:0009725 response to hormone BP 3.140e-14
GO:0009719 response to endogenous stimulus BP 3.781e-13
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
FarRed Light 4 h 		Log2 signal ratio
Col-0 shade
1 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 0.585 0.012
2 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.538 -0.016
3 252661_at AT3G44450 unknown 0.522 -0.340
4 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.496 -0.041
5 252010_at AT3G52740 unknown 0.474 -0.211
6 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.467 -0.098
7 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 0.433 -0.062
8 246966_at AT5G24850 CRY3, cryptochrome 3 0.426 -0.024
9 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.426 0.019
10 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.420 -0.026
11 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.420 0.018
12 264931_at AT1G60590 [Pectin lyase-like superfamily protein] 0.415 -0.059
13 265892_at AT2G15020 unknown 0.396 -0.213
14 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like 0.389 -0.045
15 248625_at AT5G48880 KAT5, 3-KETO-ACYL-COENZYME A THIOLASE 5, PKT1, PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, PKT2, peroxisomal 3-keto-acyl-CoA thiolase 2 0.372 0.014
16 258349_at AT3G17609 HYH, HY5-homolog 0.360 -0.090
17 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.343 0.011
18 247779_at AT5G58760 DDB2, damaged DNA binding 2 0.334 -0.024
19 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.329 0.004
20 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.328 -0.070
21 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 0.321 -0.001
22 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.321 0.077
23 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 0.319 0.005
24 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 0.313 0.039
25 265665_at AT2G27420 [Cysteine proteinases superfamily protein] 0.307 -0.264
26 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] 0.306 0.048
27 249622_at AT5G37550 unknown 0.302 -0.078
28 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.296 -0.074
29 246468_at AT5G17050 UGT78D2, UDP-glucosyl transferase 78D2 0.296 -0.051
30 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.291 -0.038
31 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.287 -0.030
32 255877_at AT2G40460 [Major facilitator superfamily protein] 0.283 -0.031
33 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 0.282 -0.054
34 262626_at AT1G06430 FTSH8, FTSH protease 8 0.273 -0.007
35 266257_at AT2G27820 ADT3, arogenate dehydratase 3, PD1, prephenate dehydratase 1 0.268 0.007
36 259076_at AT3G02140 AFP4, ABI FIVE BINDING PROTEIN 4, TMAC2, TWO OR MORE ABRES-CONTAINING GENE 2 0.267 0.101
37 263545_at AT2G21560 unknown 0.264 -0.070
38 248160_at AT5G54470 BBX29, B-box domain protein 29 0.263 0.358
39 258696_at AT3G09650 CRM3, HCF152, HIGH CHLOROPHYLL FLUORESCENCE 152 0.263 0.024
40 247946_at AT5G57180 CIA2, chloroplast import apparatus 2 0.260 -0.068
41 252073_at AT3G51750 unknown 0.259 -0.003
42 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.257 -0.132
43 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.257 0.055
44 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 0.255 0.021
45 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.252 -0.132
46 263122_at AT1G78510 AtSPS1, SPS1, solanesyl diphosphate synthase 1 0.251 -0.051
47 262536_at AT1G17100 AtHBP1, HBP1, haem-binding protein 1 0.251 -0.006
48 261958_at AT1G64500 [Glutaredoxin family protein] 0.246 -0.072
49 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 0.246 0.003
50 246411_at AT1G57770 [FAD/NAD(P)-binding oxidoreductase family protein] 0.244 -0.015
51 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 0.240 -0.024
52 257954_at AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 0.238 -0.049
53 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A 0.236 0.029
54 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 0.233 0.076
55 248537_at AT5G50100 [Putative thiol-disulphide oxidoreductase DCC] 0.230 -0.007
56 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 0.230 -0.009
57 251605_at AT3G57830 [Leucine-rich repeat protein kinase family protein] 0.230 0.051
58 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.230 -0.011
59 265634_at AT2G25530 [AFG1-like ATPase family protein] 0.229 -0.026
60 267070_at AT2G41000 [Chaperone DnaJ-domain superfamily protein] 0.227 -0.064
61 255793_at AT2G33250 unknown 0.226 -0.041
62 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 0.222 -0.065
63 262634_at AT1G06690 [NAD(P)-linked oxidoreductase superfamily protein] 0.220 -0.009
64 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 0.219 -0.098
65 251725_at AT3G56260 unknown 0.219 -0.023
66 250256_at AT5G13650 SVR3, SUPPRESSOR OF VARIEGATION 3 0.218 -0.027
67 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN 0.217 0.009
68 259970_at AT1G76570 AtLHCB7, LHCB7, light-harvesting complex B7 0.217 -0.009
69 263739_at AT2G21320 BBX18, B-box domain protein 18 0.216 -0.121
70 263287_at AT2G36145 unknown 0.211 -0.002
71 255594_at AT4G01660 ABC1, ABC transporter 1, ATABC1, ABC transporter 1, ATATH10 0.211 -0.026
72 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] 0.210 -0.029
73 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 0.209 -0.029
74 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 0.208 -0.030
75 257949_at AT3G21750 UGT71B1, UDP-glucosyl transferase 71B1 0.206 -0.048
76 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.206 -0.116
77 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.206 -0.064
78 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.205 -0.047
79 249244_at AT5G42270 FTSH5, VAR1, VARIEGATED 1 0.204 -0.005
80 260300_at AT1G80340 ATGA3OX2, ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, GA3OX2, gibberellin 3-oxidase 2, GA4H 0.202 0.010
81 263386_at AT2G40150 TBL28, TRICHOME BIREFRINGENCE-LIKE 28 0.202 -0.146
82 248049_at AT5G56090 COX15, cytochrome c oxidase 15 0.201 -0.040
83 253688_at AT4G29590 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.201 0.005
84 256097_at AT1G13670 unknown 0.198 -0.017
85 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 0.198 -0.011
86 253835_at AT4G27820 BGLU9, beta glucosidase 9 0.198 -0.142
87 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] 0.196 -0.007
88 249677_at AT5G35970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.195 -0.012
89 252411_at AT3G47430 PEX11B, peroxin 11B 0.193 -0.066
90 257262_at AT3G21890 BBX31, B-box domain protein 31 0.192 -0.092
91 262945_at AT1G79510 [Uncharacterized conserved protein (DUF2358)] 0.190 -0.020
92 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.190 0.438
93 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.579 0.303
94 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.558 0.824
95 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.518 0.555
96 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 -0.513 0.734
97 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.507 0.555
98 252765_at AT3G42800 unknown -0.498 0.266
99 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.435 0.283
100 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.418 0.044
101 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.394 0.470
102 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.388 0.330
103 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.350 0.446
104 251575_at AT3G58120 ATBZIP61, BZIP61 -0.348 0.194
105 264021_at AT2G21200 SAUR7, SMALL AUXIN UPREGULATED RNA 7 -0.345 0.172
106 255608_at AT4G01140 unknown -0.343 -0.002
107 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.332 0.188
108 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.324 0.197
109 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 -0.311 0.141
110 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.309 0.409
111 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.290 0.286
112 266688_at AT2G19660 [Cysteine/Histidine-rich C1 domain family protein] -0.286 0.208
113 258552_at AT3G07010 [Pectin lyase-like superfamily protein] -0.268 0.011
114 262236_at AT1G48330 unknown -0.266 0.029
115 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.263 0.067
116 248801_at AT5G47370 HAT2 -0.263 0.363
117 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.258 -0.005
118 256621_at AT3G24450 [Heavy metal transport/detoxification superfamily protein ] -0.258 0.015
119 258541_at AT3G07000 [Cysteine/Histidine-rich C1 domain family protein] -0.257 0.210
120 247533_at AT5G61570 [Protein kinase superfamily protein] -0.254 0.020
121 267240_at AT2G02680 [Cysteine/Histidine-rich C1 domain family protein] -0.244 0.025
122 259274_at AT3G01220 ATHB20, homeobox protein 20, HB20, homeobox protein 20 -0.236 -0.036
123 260297_at AT1G80280 [alpha/beta-Hydrolases superfamily protein] -0.229 0.088
124 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.227 0.701
125 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.226 -0.008
126 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 -0.225 0.193
127 256743_at AT3G29370 P1R3, P1R3 -0.222 0.445
128 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.221 0.055
129 265806_at AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 -0.219 0.529
130 264788_at AT2G17880 DJC24, DNA J protein C24 -0.219 0.068
131 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.219 0.335
132 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.211 0.044
133 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.210 0.163
134 259351_at AT3G05150 [Major facilitator superfamily protein] -0.209 0.057
135 253011_at AT4G37890 EDA40, embryo sac development arrest 40 -0.207 -0.002
136 249807_at AT5G23870 [Pectinacetylesterase family protein] -0.207 0.046
137 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 -0.206 0.133
138 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.205 0.040
139 254954_at AT4G10910 unknown -0.201 -0.010
140 246997_at AT5G67390 unknown -0.199 -0.007
141 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.198 0.510
142 263151_at AT1G54120 unknown -0.196 0.213
143 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 -0.192 0.334
144 245362_at AT4G17460 HAT1, JAB, JAIBA -0.190 0.163
145 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.186 0.177
146 260431_at AT1G68190 BBX27, B-box domain protein 27 -0.184 0.138
147 258367_at AT3G14370 WAG2 -0.184 0.122
148 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.183 -0.102
149 250810_at AT5G05090 [Homeodomain-like superfamily protein] -0.183 -0.075
150 261395_at AT1G79700 WRI4, WRINKLED 4 -0.182 0.096
151 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.181 -0.120
152 251771_at AT3G56000 ATCSLA14, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, CSLA14, cellulose synthase like A14 -0.181 -0.133
153 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 -0.177 0.412
154 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 -0.172 0.026
155 257547_at AT3G13000 unknown -0.167 0.033
156 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.167 0.054
157 254373_at AT4G21730 [expressed protein] -0.167 0.057
158 250108_at AT5G15150 ATHB-3, homeobox 3, ATHB3, HAT7, HOMEOBOX FROM ARABIDOPSIS THALIANA 7, HB-3, homeobox 3 -0.166 0.110
159 247903_at AT5G57340 unknown -0.164 -0.013
160 257701_at AT3G12710 [DNA glycosylase superfamily protein] -0.164 -0.034
161 257113_at AT3G20130 CYP705A22, cytochrome P450, family 705, subfamily A, polypeptide 22, GPS1, gravity persistence signal 1 -0.164 -0.035
162 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.162 -0.011
163 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.162 0.041
164 248623_at AT5G49170 unknown -0.161 0.061
165 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.161 0.429
166 258528_at AT3G06770 [Pectin lyase-like superfamily protein] -0.158 0.045
167 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.155 0.034
168 264023_at AT2G21195 unknown -0.154 0.016
169 261917_at AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] -0.154 0.237
170 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.154 0.300
171 251774_at AT3G55840 [Hs1pro-1 protein] -0.150 0.369
172 248912_at AT5G45670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.148 0.001
173 247577_at AT5G61290 [Flavin-binding monooxygenase family protein] -0.146 -0.096
174 251864_at AT3G54920 PMR6, powdery mildew resistant 6 -0.145 0.049
175 257071_at AT3G28180 ATCSLC04, Cellulose-synthase-like C4, ATCSLC4, CSLC04, CSLC04, Cellulose-synthase-like C4, CSLC4, CELLULOSE-SYNTHASE LIKE C4 -0.144 0.062
176 260434_at AT1G68330 unknown -0.144 0.154
177 252217_at AT3G50140 unknown -0.143 -0.057
178 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 -0.143 0.057
179 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.143 0.233
180 267210_at AT2G30920 ATCOQ3, coenzyme Q 3, COQ3, COQ3, coenzyme Q 3, EMB3002, embryo defective 3002 -0.142 -0.022
181 245574_at AT4G14750 IQD19, IQ-domain 19 -0.142 -0.015
182 257618_at AT3G24715 [Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain] -0.142 0.022
183 265688_at AT2G24300 [Calmodulin-binding protein] -0.141 0.025