4.0:Information of module
Dark 4 h pls UV-A 5 min
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019684 photosynthesis, light reaction BP 3.461e-26
GO:0015979 photosynthesis BP 1.446e-25
GO:0006790 sulfur compound metabolic process BP 1.002e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048573 photoperiodism, flowering BP 1.020e-08
GO:0009648 photoperiodism BP 1.866e-08
GO:0009628 response to abiotic stimulus BP 3.363e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Dark 4 h pls UV-A 5 min 		Log2 signal ratio
CCA1-ox 6am non-polysomal
1 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.868 0.236
2 249117_at AT5G43840 AT-HSFA6A, heat shock transcription factor A6A, HSFA6A, heat shock transcription factor A6A 0.721 -0.081
3 260877_at AT1G21500 unknown 0.507 -0.051
4 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E 0.474 -0.000
5 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 0.471 -0.114
6 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.465 -0.005
7 251814_at AT3G54890 LHCA1, photosystem I light harvesting complex gene 1 0.438 -0.016
8 260542_at AT2G43560 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.412 0.079
9 251658_at AT3G57020 [Calcium-dependent phosphotriesterase superfamily protein] 0.392 0.218
10 255248_at AT4G05180 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-2, photosystem II subunit Q-2, PSII-Q 0.389 -0.006
11 259840_at AT1G52230 PSAH-2, PHOTOSYSTEM I SUBUNIT H-2, PSAH2, photosystem I subunit H2, PSI-H 0.389 -0.046
12 256309_at AT1G30380 PSAK, photosystem I subunit K 0.382 0.064
13 249645_at AT5G36910 THI2.2, thionin 2.2 0.381 -0.112
14 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 0.376 -0.039
15 259491_at AT1G15820 CP24, LHCB6, light harvesting complex photosystem II subunit 6 0.376 -0.036
16 256979_at AT3G21055 PSBTN, photosystem II subunit T 0.369 -0.052
17 253009_at AT4G37930 SHM1, serine transhydroxymethyltransferase 1, SHMT1, SERINE HYDROXYMETHYLTRANSFERASE 1, STM, SERINE TRANSHYDROXYMETHYLTRANSFERASE 0.368 -0.003
18 249876_at AT5G23060 CaS, calcium sensing receptor 0.365 -0.052
19 254945_at AT4G10940 [RING/U-box protein] 0.359 -0.128
20 261746_at AT1G08380 PSAO, photosystem I subunit O 0.359 -0.021
21 262609_at AT1G13930 unknown 0.342 -0.043
22 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.327 -0.065
23 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT 0.323 0.285
24 255457_at AT4G02770 PSAD-1, photosystem I subunit D-1 0.323 -0.068
25 255886_at AT1G20340 DRT112, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, PETE2, PLASTOCYANIN 2 0.318 0.330
26 255046_at AT4G09650 ATPD, ATP synthase delta-subunit gene, PDE332, PIGMENT DEFECTIVE 332 0.318 -0.101
27 259460_at AT1G44000 unknown 0.317 -0.080
28 263760_at AT2G21280 ATSULA, GC1, GIANT CHLOROPLAST 1, SULA 0.309 0.139
29 267635_at AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.306 -0.109
30 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.305 -0.158
31 250243_at AT5G13630 ABAR, ABA-BINDING PROTEIN, CCH, CONDITIONAL CHLORINA, CCH1, CHLH, H SUBUNIT OF MG-CHELATASE, GUN5, GENOMES UNCOUPLED 5 0.304 0.057
32 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 0.303 0.061
33 249610_at AT5G37360 unknown 0.300 0.030
34 262970_at AT1G75690 LQY1, LOW QUANTUM YIELD OF PHOTOSYSTEM II 1 0.297 0.007
35 262736_at AT1G28570 [SGNH hydrolase-type esterase superfamily protein] 0.291 0.114
36 259892_at AT1G72610 ATGER1, A. THALIANA GERMIN-LIKE PROTEIN 1, GER1, germin-like protein 1, GLP1, GERMIN-LIKE PROTEIN 1 0.291 0.065
37 253387_at AT4G33010 AtGLDP1, glycine decarboxylase P-protein 1, GLDP1, glycine decarboxylase P-protein 1 0.289 -0.012
38 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 0.286 0.053
39 254790_at AT4G12800 PSAL, photosystem I subunit l 0.286 -0.253
40 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 0.282 0.049
41 255440_at AT4G02530 [chloroplast thylakoid lumen protein] 0.282 0.072
42 253039_at AT4G37760 SQE3, squalene epoxidase 3 0.281 0.105
43 261751_at AT1G76080 ATCDSP32, ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, CDSP32, chloroplastic drought-induced stress protein of 32 kD 0.280 0.154
44 258589_at AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 0.277 0.212
45 260072_at AT1G73650 [FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors] 0.276 0.057
46 266097_at AT2G37970 AtHBP2, HBP2, haem-binding protein 2, SOUL-1 0.274 -0.084
47 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 0.262 -0.089
48 262557_at AT1G31330 PSAF, photosystem I subunit F 0.261 0.193
49 248920_at AT5G45930 CHL I2, CHLI-2, CHLI2, magnesium chelatase i2 0.257 0.186
50 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.256 0.035
51 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 0.254 0.092
52 248028_at AT5G55620 unknown 0.253 0.363
53 257932_at AT3G17040 HCF107, high chlorophyll fluorescent 107 0.252 -0.078
54 252130_at AT3G50820 OEC33, OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, PSBO-2, PHOTOSYSTEM II SUBUNIT O-2, PSBO2, photosystem II subunit O-2 0.251 0.033
55 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 0.251 0.145
56 261197_at AT1G12900 GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 0.245 0.098
57 253860_at AT4G27700 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.244 -0.004
58 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 0.244 -0.000
59 254398_at AT4G21280 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-1, PHOTOSYSTEM II SUBUNIT Q-1, PSBQA, photosystem II subunit QA 0.237 0.027
60 267526_at AT2G30570 PSBW, photosystem II reaction center W 0.237 -0.003
61 261769_at AT1G76100 PETE1, plastocyanin 1 0.233 -0.011
62 262940_at AT1G79520 [Cation efflux family protein] 0.232 -0.044
63 262168_at AT1G74730 unknown 0.229 -0.157
64 256469_at AT1G32540 LOL1, lsd one like 1 0.227 -0.079
65 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.226 0.260
66 247320_at AT5G64040 PSAN 0.226 -0.118
67 250429_at AT5G10470 KAC1, kinesin like protein for actin based chloroplast movement 1, KCA1, KINESIN CDKA;1 ASSOCIATED 1 0.226 0.092
68 257033_at AT3G19170 ATPREP1, presequence protease 1, ATZNMP, PREP1, presequence protease 1 0.221 0.068
69 255764_at AT1G16720 HCF173, high chlorophyll fluorescence phenotype 173 0.219 -0.082
70 257311_at AT3G26570 ORF02, PHT2;1, phosphate transporter 2;1 0.217 -0.130
71 247073_at AT5G66570 MSP-1, MANGANESE-STABILIZING PROTEIN 1, OE33, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, OEE1, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OEE33, OXYGEN EVOLVING ENHANCER PROTEIN 33, PSBO-1, PS II OXYGEN-EVOLVING COMPLEX 1, PSBO1, PS II oxygen-evolving complex 1 0.213 -0.019
72 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] 0.212 0.081
73 245061_at AT2G39730 RCA, rubisco activase 0.209 0.010
74 262376_at AT1G72970 EDA17, embryo sac development arrest 17, HTH, HOTHEAD 0.208 -0.038
75 254970_at AT4G10340 LHCB5, light harvesting complex of photosystem II 5 0.207 -0.038
76 248492_at AT5G51040 SDHAF2, Succinate dehydrogenase assembly factor 2 0.207 -0.044
77 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 0.206 0.116
78 256076_at AT1G18060 unknown 0.203 0.308
79 255675_at AT4G00480 ATMYC1, myc1 0.200 -0.249
80 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 0.198 -0.018
81 264545_at AT1G55670 PSAG, photosystem I subunit G 0.196 0.094
82 248886_at AT5G46110 APE2, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, TPT, triose-phosphate ⁄ phosphate translocator 0.196 0.031
83 259799_at AT1G72290 [Kunitz family trypsin and protease inhibitor protein] -0.570 0.398
84 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.510 0.147
85 261423_at AT1G18750 AGL65, AGAMOUS-like 65 -0.414 0.015
86 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.369 0.139
87 249174_at AT5G42900 COR27, cold regulated gene 27 -0.366 -0.049
88 245233_at AT4G25580 [CAP160 protein] -0.341 -0.216
89 248160_at AT5G54470 BBX29, B-box domain protein 29 -0.297 -0.129
90 259935_at AT1G71250 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.296 -0.014
91 253322_at AT4G33980 unknown -0.275 0.159
92 262452_at AT1G11210 unknown -0.272 -0.029
93 252054_at AT3G52540 ATOFP18, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, OFP18, ovate family protein 18 -0.254 0.160
94 250214_at AT5G13870 EXGT-A4, endoxyloglucan transferase A4, XTH5, xyloglucan endotransglucosylase/hydrolase 5 -0.249 -0.004
95 247674_at AT5G59930 [Cysteine/Histidine-rich C1 domain family protein] -0.248 0.056
96 264598_at AT1G04610 YUC3, YUCCA 3 -0.243 0.323
97 263894_at AT2G21910 CYP96A5, cytochrome P450, family 96, subfamily A, polypeptide 5 -0.241 0.038
98 251012_at AT5G02580 unknown -0.239 0.035
99 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.239 0.293
100 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.237 0.143
101 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 -0.235 0.067
102 264597_at AT1G04620 HCAR, 7-hydroxymethyl chlorophyll a (HMChl) reductase -0.232 -0.039
103 261558_at AT1G01770 unknown -0.231 -0.148
104 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 -0.221 -0.089
105 248486_at AT5G51060 ATRBOHC, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, RBOHC, RESPIRATORY BURST OXIDASE HOMOLOG C, RHD2, ROOT HAIR DEFECTIVE 2 -0.217 0.136
106 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 -0.212 -0.106
107 260213_at AT1G74490 [Protein kinase superfamily protein] -0.209 0.047
108 260557_at AT2G43610 [Chitinase family protein] -0.205 0.108
109 253522_at AT4G31290 AtGGCT2;2, GGCT2;2, gamma-glutamyl cyclotransferase 2;2 -0.201 -0.062
110 266546_at AT2G35270 AHL21, AT-hook motif nuclear localized protein 21, GIK, GIANT KILLER -0.199 0.140
111 259962_at AT1G53690 [DNA directed RNA polymerase, 7 kDa subunit] -0.198 -0.213
112 266581_at AT2G46140 [Late embryogenesis abundant protein] -0.198 -0.132
113 245034_at AT2G26390 [Serine protease inhibitor (SERPIN) family protein] -0.198 -0.083
114 254754_at AT4G13210 [Pectin lyase-like superfamily protein] -0.195 -0.156
115 253434_at AT4G32500 AKT5, K+ transporter 5, KT5, K+ transporter 5 -0.190 0.220
116 262047_at AT1G80160 GLYI7, glyoxylase I 7 -0.189 0.046
117 260361_at AT1G69360 unknown -0.188 0.082
118 257197_at AT3G23800 SBP3, selenium-binding protein 3 -0.186 0.121
119 251361_at AT3G61230 PLIM2c, PLIM2c -0.183 0.001
120 265274_at AT2G28450 [zinc finger (CCCH-type) family protein] -0.181 -0.082
121 263985_at AT2G42750 DJC77, DNA J protein C77 -0.180 -0.059
122 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 -0.179 0.127
123 260483_at AT1G11000 ATMLO4, MILDEW RESISTANCE LOCUS O 4, MLO4, MILDEW RESISTANCE LOCUS O 4 -0.179 -0.022
124 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.177 0.011
125 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 -0.175 -0.209
126 253036_at AT4G38340 NLP3, NIN-like protein 3 -0.169 0.041
127 263373_at AT2G20515 unknown -0.166 0.034
128 248869_at AT5G46840 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.166 -0.008
129 248257_at AT5G53410 unknown -0.166 -0.094
130 251100_at AT5G01670 [NAD(P)-linked oxidoreductase superfamily protein] -0.165 0.001
131 264647_at AT1G09090 ATRBOHB, respiratory burst oxidase homolog B, ATRBOHB-BETA, RBOHB, respiratory burst oxidase homolog B -0.164 -0.036
132 259065_at AT3G07520 ATGLR1.4, GLR1.4, glutamate receptor 1.4 -0.163 -0.069
133 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.163 -0.212
134 260668_at AT1G19530 unknown -0.163 0.007
135 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.162 -0.141
136 246390_at AT1G77330 ACO5, ACC oxidase 5 -0.161 0.227
137 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 -0.158 -0.033
138 250769_at AT5G05680 EMB2789, EMBRYO DEFECTIVE 2789, MOS7, MODIFIER OF SNC1,7 -0.157 0.122
139 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 -0.156 -0.151
140 266004_at AT2G37330 ALS3, ALUMINUM SENSITIVE 3 -0.155 0.113
141 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.154 0.120
142 260846_at AT1G17300 unknown -0.151 -0.088
143 261224_at AT1G20160 ATSBT5.2 -0.151 -0.031
144 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.150 0.064
145 251289_at AT3G61830 ARF18, auxin response factor 18 -0.149 -0.027
146 252906_at AT4G39640 GGT1, gamma-glutamyl transpeptidase 1 -0.149 -0.094
147 260991_at AT1G12160 [Flavin-binding monooxygenase family protein] -0.149 -0.025
148 245970_at AT5G20710 BGAL7, beta-galactosidase 7 -0.149 -0.213
149 251870_at AT3G54510 [Early-responsive to dehydration stress protein (ERD4)] -0.148 -0.059
150 246952_at AT5G04820 ATOFP13, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, OFP13, ovate family protein 13 -0.145 0.058
151 262845_at AT1G14740 TTA1, TITANIA 1 -0.145 0.253
152 261757_at AT1G08210 [Eukaryotic aspartyl protease family protein] -0.142 -0.284
153 251372_at AT3G60520 unknown -0.141 0.323
154 250441_at AT5G10540 TOP2, thimet metalloendopeptidase 2 -0.141 -0.037
155 264905_at AT2G17430 ATMLO7, MLO7, MILDEW RESISTANCE LOCUS O 7, NTA, NORTIA -0.141 -0.049
156 248969_at AT5G45310 unknown -0.141 0.019
157 248193_at AT5G54080 AtHGO, HGO, homogentisate 1,2-dioxygenase -0.140 0.074
158 258445_at AT3G22400 ATLOX5, Arabidopsis thaliana lipoxygenase 5, LOX5 -0.139 0.047
159 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.139 0.040
160 245382_at AT4G17800 AHL23, AT-hook motif nuclear localized protein 23 -0.139 0.075
161 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 -0.138 -0.161
162 265985_at AT2G24220 ATPUP5, purine permease 5, PUP5, purine permease 5 -0.138 0.014
163 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.138 -0.092