4.0:Information of module
Genotoxic Stress 3 h (shoot)
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010212 response to ionizing radiation BP 1.956e-08
GO:0010332 response to gamma radiation BP 3.838e-08
GO:0006302 double-strand break repair BP 4.473e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009741 response to brassinosteroid BP 1.752e-03
GO:0009962 regulation of flavonoid biosynthetic pro... BP 2.182e-03
GO:0043094 cellular metabolic compound salvage BP 2.230e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Genotoxic Stress 3 h (shoot)		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 253240_at AT4G34510 KCS17, 3-ketoacyl-CoA synthase 17 1.031 0.059
2 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 1.006 0.153
3 250914_at AT5G03780 TRFL10, TRF-like 10 0.944 -0.049
4 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 0.937 -0.348
5 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.854 -0.059
6 246132_at AT5G20850 ATRAD51, RAD51 0.712 -0.107
7 254565_at AT4G19130 [Replication factor-A protein 1-related] 0.698 -0.029
8 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.650 -0.081
9 249809_at AT5G23910 [ATP binding microtubule motor family protein] 0.630 -0.102
10 245137_at AT2G45460 [SMAD/FHA domain-containing protein ] 0.621 -0.017
11 255872_at AT2G30360 CIPK11, CBL-INTERACTING PROTEIN KINASE 11, PKS5, PROTEIN KINASE SOS2-LIKE 5, SIP4, SOS3-interacting protein 4, SNRK3.22, SNF1-RELATED PROTEIN KINASE 3.22 0.620 -0.024
12 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.521 0.257
13 249326_at AT5G40840 AtRAD21.1, Sister chromatid cohesion 1 (SCC1) protein homolog 2, SYN2 0.504 -0.075
14 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.496 0.088
15 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 0.477 0.057
16 258476_at AT3G02400 [SMAD/FHA domain-containing protein ] 0.461 0.058
17 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.430 -0.013
18 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.427 0.328
19 258091_at AT3G14560 unknown 0.387 0.112
20 247081_at AT5G66130 ATRAD17, RADIATION SENSITIVE 17, RAD17, RADIATION SENSITIVE 17 0.386 0.056
21 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 0.360 -0.064
22 250372_at AT5G11460 unknown 0.323 0.139
23 248738_at AT5G48020 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.304 0.019
24 264116_at AT2G31320 PARP1, POLY(ADP-RIBOSE) POLYMERASE 1 0.300 -0.041
25 265449_at AT2G46610 At-RS31a, arginine/serine-rich splicing factor 31a, RS31a, arginine/serine-rich splicing factor 31a 0.295 -0.012
26 265184_at AT1G23710 unknown 0.291 -0.059
27 248641_at AT5G49110 unknown 0.282 -0.158
28 254287_at AT4G22960 unknown 0.281 -0.033
29 256981_at AT3G13380 BRL3, BRI1-like 3 0.274 0.081
30 266063_at AT2G18760 CHR8, chromatin remodeling 8 0.221 0.217
31 264674_at AT1G09815 POLD4, polymerase delta 4 0.218 0.071
32 257086_at AT3G20490 unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). 0.209 0.068
33 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 0.200 0.043
34 256285_at AT3G12510 [MADS-box family protein] 0.194 0.000
35 261953_at AT1G64440 REB1, ROOT EPIDERMAL BULGER1, RHD1, ROOT HAIR DEFECTIVE 1, UGE4, UDP-GLUCOSE 4-EPIMERASE 0.189 0.177
36 261031_at AT1G17360 unknown 0.189 0.121
37 253514_at AT4G31805 POLAR, POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION 0.186 0.109
38 258663_at AT3G08670 unknown 0.185 -0.021
39 263882_at AT2G21790 ATRNR1, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, CLS8, CRINKLY LEAVES 8, DPD2, defective in pollen organelle DNA degradation 2, R1, RIBONUCLEOTIDE REDUCTASE 1, RNR1, ribonucleotide reductase 1 0.181 -0.166
40 267282_at AT2G19390 unknown 0.175 0.606
41 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 -0.270 -0.069
42 246072_at AT5G20240 PI, PISTILLATA -0.245 -0.072
43 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] -0.240 0.010
44 250683_x_at AT5G06640 EXT10, extensin 10 -0.169 0.088
45 253182_at AT4G35190 LOG5, LONELY GUY 5 -0.166 0.204
46 253172_at AT4G35060 HIPP25, heavy metal associated isoprenylated plant protein 25 -0.164 -0.004
47 255080_at AT4G09030 AGP10, arabinogalactan protein 10, ATAGP10 -0.141 0.006
48 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.137 0.097
49 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.132 -0.046
50 263438_at AT2G28660 [Chloroplast-targeted copper chaperone protein] -0.130 0.036
51 250301_at AT5G11970 unknown -0.126 -0.008
52 260812_at AT1G43650 UMAMIT22, Usually multiple acids move in and out Transporters 22 -0.124 0.083
53 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR -0.121 0.066
54 255527_at AT4G02360 unknown -0.116 0.179
55 259850_at AT1G72240 unknown -0.112 -0.013
56 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 -0.110 -0.009
57 253140_at AT4G35480 RHA3B, RING-H2 finger A3B -0.109 0.174
58 260569_at AT2G43640 [Signal recognition particle, SRP9/SRP14 subunit] -0.108 -0.004
59 260557_at AT2G43610 [Chitinase family protein] -0.108 0.108
60 262001_at AT1G33790 [jacalin lectin family protein] -0.108 -0.337
61 265356_at AT2G16595 [Translocon-associated protein (TRAP), alpha subunit] -0.107 0.003
62 261209_at AT1G12810 [proline-rich family protein] -0.105 0.162
63 259743_at AT1G71140 [MATE efflux family protein] -0.101 0.029
64 253329_at AT4G33480 unknown -0.101 0.249
65 266094_at AT2G37975 [Yos1-like protein] -0.099 0.102
66 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.098 0.018
67 254573_at AT4G19420 [Pectinacetylesterase family protein] -0.096 -0.071
68 261470_at AT1G28370 ATERF11, ERF DOMAIN PROTEIN 11, ERF11, ERF domain protein 11 -0.093 -0.057
69 265884_at AT2G42320 [nucleolar protein gar2-related] -0.092 -0.058
70 247199_at AT5G65210 TGA1, TGACG sequence-specific binding protein 1 -0.091 -0.167
71 264815_at AT1G03620 [ELMO/CED-12 family protein] -0.091 -0.010
72 258935_at AT3G10120 unknown -0.091 0.120
73 246258_at AT1G31840 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.091 0.193
74 246485_at AT5G16080 AtCXE17, carboxyesterase 17, CXE17, carboxyesterase 17 -0.091 0.097
75 264938_at AT1G60610 [SBP (S-ribonuclease binding protein) family protein] -0.090 -0.086
76 260355_at AT1G69180 CRC, CRABS CLAW -0.090 0.170
77 257029_at AT3G19240 [Vacuolar import/degradation, Vid27-related protein] -0.087 0.002
78 260849_at AT1G21860 sks7, SKU5 similar 7 -0.086 0.005
79 260700_at AT1G32260 unknown -0.084 0.006