4.0:Information of module
Oxidative Stress 3 h (shoot)
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050665 hydrogen peroxide biosynthetic process BP 2.346e-05
GO:1903409 reactive oxygen species biosynthetic pro... BP 2.963e-05
GO:0048518 positive regulation of biological proces... BP 1.138e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 2.496e-07
GO:0009658 chloroplast organization BP 2.692e-05
GO:0010207 photosystem II assembly BP 7.804e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Oxidative Stress 3 h (shoot)		 Log2 signal ratio
Leafminer damaged seedlings
1 258663_at AT3G08670 unknown 0.241 -0.021
2 267282_at AT2G19390 unknown 0.209 -0.064
3 266055_at AT2G40650 [PRP38 family protein] 0.204 -0.034
4 267519_at AT2G30470 HSI2, high-level expression of sugar-inducible gene 2, VAL1, VP1/ABI3-LIKE 1 0.175 -0.010
5 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.175 -0.376
6 244923_s_at ATMG01020 ORF153B 0.170 0.060
7 261953_at AT1G64440 REB1, ROOT EPIDERMAL BULGER1, RHD1, ROOT HAIR DEFECTIVE 1, UGE4, UDP-GLUCOSE 4-EPIMERASE 0.169 -0.166
8 264176_at AT1G02110 unknown 0.163 -0.304
9 264625_at AT1G09020 ATSNF4, SNF4, homolog of yeast sucrose nonfermenting 4 0.159 -0.117
10 251078_at AT5G01990 [Auxin efflux carrier family protein] 0.150 0.123
11 262200_at AT2G01070 [Lung seven transmembrane receptor family protein] 0.128 -0.241
12 247140_at AT5G66250 [kinectin-related] 0.125 0.120
13 259358_at AT1G13250 GATL3, galacturonosyltransferase-like 3 0.124 -0.309
14 250117_at AT5G16440 IPP1, isopentenyl diphosphate isomerase 1 0.122 0.107
15 263112_at AT1G03080 NET1D, Networked 1D 0.121 0.316
16 246516_at AT5G15740 [O-fucosyltransferase family protein] 0.120 -0.585
17 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.117 0.639
18 261552_at AT1G63430 [Leucine-rich repeat protein kinase family protein] 0.116 -0.298
19 263765_at AT2G21540 ATSFH3, SEC14-LIKE 3, SFH3, SEC14-like 3 0.113 -0.203
20 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 0.113 0.716
21 251281_at AT3G61640 AGP20, arabinogalactan protein 20, AtAGP20, Arabinogalactan protein 20 0.113 0.274
22 264597_at AT1G04620 HCAR, 7-hydroxymethyl chlorophyll a (HMChl) reductase 0.110 -0.401
23 250126_at AT5G16310 UCH1 0.108 -0.163
24 258733_at AT3G05850 MUG7, MUSTANG 7 0.108 -0.124
25 253378_at AT4G33310 unknown 0.107 0.028
26 266422_at AT2G38650 GAUT7, galacturonosyltransferase 7, LGT7, LIKE GLYCOSYL TRANSFERASE 7 0.105 -0.121
27 247653_at AT5G59950 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.105 0.116
28 257891_at AT3G17170 RFC3, REGULATOR OF FATTY-ACID COMPOSITION 3 0.104 -0.144
29 248488_at AT5G51080 [RNase H family protein] 0.104 -0.058
30 246924_at AT5G25060 RRC1, reduced red-light responses in cry1cry2 background 1 0.103 -0.077
31 251480_at AT3G59710 [NAD(P)-binding Rossmann-fold superfamily protein] 0.102 0.268
32 267373_at AT2G26280 CID7, CTC-interacting domain 7 0.101 -0.098
33 263493_at AT2G42520 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.101 0.077
34 266659_at AT2G25850 PAPS2, poly(A) polymerase 2 0.101 0.170
35 253957_at AT4G26320 AGP13, arabinogalactan protein 13 0.101 0.011
36 264250_at AT1G78680 ATGGH2, gamma-glutamyl hydrolase 2, GGH2, gamma-glutamyl hydrolase 2 0.100 0.119
37 248533_at AT5G50020 [DHHC-type zinc finger family protein] 0.099 -0.165
38 253475_at AT4G32290 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.098 0.062
39 254686_at AT4G13720 [Inosine triphosphate pyrophosphatase family protein] 0.095 -0.080
40 249538_at AT5G38840 [SMAD/FHA domain-containing protein ] 0.095 -0.033
41 252652_at AT3G44720 ADT4, arogenate dehydratase 4 0.095 0.272
42 251542_at AT3G58760 [Integrin-linked protein kinase family] -0.145 -0.011
43 249612_at AT5G37290 [ARM repeat superfamily protein] -0.131 -0.250
44 249807_at AT5G23870 [Pectinacetylesterase family protein] -0.130 -0.321
45 261762_at AT1G15510 ATECB2, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, ECB2, EARLY CHLOROPLAST BIOGENESIS2, VAC1, VANILLA CREAM 1 -0.114 -0.367
46 245105_at AT2G41610 unknown -0.110 -0.012
47 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.110 -0.109
48 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] -0.109 0.037
49 248500_at AT5G50410 unknown -0.107 -0.002
50 259106_at AT3G05490 RALFL22, ralf-like 22 -0.102 -0.073
51 250687_at AT5G06660 unknown -0.102 0.043
52 265539_at AT2G15830 unknown -0.097 0.140
53 258034_at AT3G21300 [RNA methyltransferase family protein] -0.096 -0.060
54 254706_at AT4G17950 AHL13, AT-hook motif nuclear localized protein 13 -0.096 0.066
55 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.095 -0.388
56 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.094 -0.066
57 260610_at AT2G43680 IQD14, IQ-domain 14 -0.094 0.027
58 250426_at AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -0.093 -0.107
59 255544_at AT4G01880 [methyltransferases] -0.091 -0.039
60 257057_at AT3G15310 unknown -0.087 -0.810
61 254238_at AT4G23540 [ARM repeat superfamily protein] -0.086 -0.096
62 246296_at AT3G56750 unknown -0.085 -0.113
63 254094_at AT4G25120 ATSRS2, ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, SRS2, SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2 -0.084 -0.121
64 245396_at AT4G14870 SECE1 -0.083 -0.148
65 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.083 -0.281
66 259743_at AT1G71140 [MATE efflux family protein] -0.078 0.149
67 261561_at AT1G01730 unknown -0.078 0.170
68 265461_at AT2G46500 ATPI4K GAMMA 4, phosphoinositide 4-kinase gamma 4, PI4K GAMMA 4, phosphoinositide 4-kinase gamma 4, UBDK GAMMA 4, UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4 -0.076 0.060
69 245429_at AT4G17580 [Bax inhibitor-1 family protein] -0.076 0.071
70 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.074 0.286
71 261715_at AT1G18485 [Pentatricopeptide repeat (PPR) superfamily protein] -0.074 -0.267
72 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] -0.073 0.147
73 260339_at AT1G69220 SIK1 -0.073 -0.069
74 259538_at AT1G12310 [Calcium-binding EF-hand family protein] -0.073 0.028
75 262149_at AT1G52530 unknown -0.073 0.031
76 262621_at AT1G06530 PMD2, peroxisomal and mitochondrial division factor 2 -0.072 0.006
77 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A -0.072 -0.158
78 254637_at AT4G18720 [Transcription factor IIS protein] -0.071 0.068
79 248349_at AT5G52240 AtMAPR5, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, ATMP1, MSBP1, membrane steroid binding protein 1 -0.071 0.088
80 262562_at AT1G34220 [Regulator of Vps4 activity in the MVB pathway protein] -0.071 0.104
81 264595_at AT1G04750 AT VAMP7B, ATVAMP721, VAMP721, vesicle-associated membrane protein 721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B -0.070 0.081