4.0:Information of module
Wounding Stress3 h (root)
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0016144 S-glycoside biosynthetic process BP 1.332e-11
GO:0019758 glycosinolate biosynthetic process BP 1.332e-11
GO:0019761 glucosinolate biosynthetic process BP 1.332e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0000302 response to reactive oxygen species BP 5.980e-11
GO:0050896 response to stimulus BP 1.554e-10
GO:0010035 response to inorganic substance BP 1.693e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Wounding Stress3 h (root)		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 1.109 -1.301
2 264145_at AT1G79310 AtMC7, metacaspase 7, AtMCP2a, metacaspase 2a, MC7, metacaspase 7, MCP2a, metacaspase 2a 0.793 0.204
3 265204_at AT2G36650 unknown 0.696 0.070
4 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.671 -0.353
5 262373_at AT1G73120 unknown 0.630 0.762
6 245550_at AT4G15330 CYP705A1, cytochrome P450, family 705, subfamily A, polypeptide 1 0.624 -0.460
7 251335_at AT3G61400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.511 -0.351
8 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.500 -0.993
9 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.495 -0.668
10 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.470 -0.083
11 251916_at AT3G53960 [Major facilitator superfamily protein] 0.469 -0.741
12 261215_at AT1G32970 [Subtilisin-like serine endopeptidase family protein] 0.427 -0.550
13 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.412 -1.044
14 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] 0.381 -0.195
15 260429_at AT1G72450 JAZ6, jasmonate-zim-domain protein 6, TIFY11B, TIFY DOMAIN PROTEIN 11B 0.375 -0.097
16 247754_at AT5G59080 unknown 0.370 -0.198
17 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] 0.367 -0.792
18 255129_at AT4G08290 UMAMIT20, Usually multiple acids move in and out Transporters 20 0.367 1.056
19 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.363 -0.714
20 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 0.349 0.254
21 247727_at AT5G59490 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.344 -0.235
22 260812_at AT1G43650 UMAMIT22, Usually multiple acids move in and out Transporters 22 0.340 -0.636
23 256497_at AT1G31580 CXC750, ECS1 0.322 0.555
24 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.321 0.617
25 262171_at AT1G74950 JAZ2, JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY10B 0.311 0.015
26 252876_at AT4G39970 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.291 0.907
27 261713_at AT1G32640 ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, JASMONATE INSENSITIVE 1, MYC2, RD22BP1, ZBF1 0.286 -0.383
28 265327_at AT2G18210 unknown 0.280 -0.373
29 266456_at AT2G22770 NAI1 0.278 0.134
30 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.276 -0.288
31 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.276 0.251
32 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.270 -0.286
33 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 0.266 -0.195
34 264652_at AT1G08920 ESL1, ERD (early response to dehydration) six-like 1 0.265 -0.127
35 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.263 -0.546
36 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 0.261 -0.771
37 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] 0.257 -0.326
38 245906_at AT5G11070 unknown 0.255 -0.257
39 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] 0.254 -1.108
40 257311_at AT3G26570 ORF02, PHT2;1, phosphate transporter 2;1 0.250 0.496
41 258421_at AT3G16690 AtSWEET16, SWEET16 0.248 -0.757
42 266526_at AT2G16980 [Major facilitator superfamily protein] 0.246 -0.837
43 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 0.244 -0.698
44 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.240 0.444
45 257480_at AT1G15640 unknown 0.238 -0.699
46 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 0.231 0.348
47 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 0.226 -1.187
48 249208_at AT5G42650 AOS, allene oxide synthase, CYP74A, CYTOCHROME P450 74A, DDE2, DELAYED DEHISCENCE 2 0.218 0.457
49 264580_at AT1G05340 unknown 0.217 -1.116
50 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 0.216 -0.270
51 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 0.216 0.071
52 246230_at AT4G36710 AtHAM4, Arabidopsis thaliana HAIRY MERISTEM 4, HAM4 0.215 0.166
53 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH 0.211 -0.709
54 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 0.208 0.918
55 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.208 0.932
56 264271_at AT1G60270 BGLU6, beta glucosidase 6 0.206 -0.728
57 262577_at AT1G15290 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.205 1.222
58 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.205 0.286
59 264052_at AT2G22330 CYP79B3, cytochrome P450, family 79, subfamily B, polypeptide 3 0.204 -0.268
60 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.202 -1.086
61 265131_at AT1G23760 JP630, PG3, POLYGALACTURONASE 3 0.199 -0.335
62 255028_at AT4G09890 unknown 0.199 -1.023
63 247775_at AT5G58690 ATPLC5, PLC5, phosphatidylinositol-speciwc phospholipase C5 0.198 -0.270
64 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.197 0.287
65 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.197 -1.015
66 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.197 0.657
67 262010_at AT1G35612 [expressed protein] 0.195 0.040
68 252536_at AT3G45700 [Major facilitator superfamily protein] 0.195 -0.021
69 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.195 -0.313
70 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 0.194 -0.233
71 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] 0.193 -0.595
72 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] 0.192 -0.783
73 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 0.191 -1.532
74 257428_at AT1G78990 [HXXXD-type acyl-transferase family protein] 0.190 -0.623
75 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.188 -0.144
76 250366_at AT5G11420 unknown 0.188 0.643
77 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.188 -0.955
78 245776_at AT1G30260 unknown 0.186 -0.878
79 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] 0.181 -1.210
80 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 0.178 -0.764
81 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] 0.177 -0.893
82 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] 0.173 -0.366
83 263491_at AT2G42600 ATPPC2, phosphoenolpyruvate carboxylase 2, PPC2, phosphoenolpyruvate carboxylase 2 0.171 1.008
84 263032_at AT1G23850 unknown 0.170 0.015
85 254862_at AT4G12030 BASS5, BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, BAT5, bile acid transporter 5 0.169 -0.741
86 259725_at AT1G61065 unknown 0.167 -0.708
87 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 0.167 -0.362
88 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] 0.167 -0.148
89 261060_at AT1G17340 [Phosphoinositide phosphatase family protein] 0.164 -0.520
90 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein -0.725 0.227
91 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] -0.702 -0.881
92 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A -0.700 -0.122
93 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 -0.616 -1.038
94 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -0.533 -0.663
95 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.459 -0.299
96 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT -0.453 0.174
97 255811_at AT4G10250 ATHSP22.0 -0.401 -0.262
98 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 -0.367 -0.631
99 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 -0.353 0.235
100 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] -0.318 0.513
101 264929_at AT1G60730 [NAD(P)-linked oxidoreductase superfamily protein] -0.287 -0.860
102 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.275 -0.295
103 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.270 -1.104
104 250798_at AT5G05340 PRX52, peroxidase 52 -0.257 0.461
105 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.237 0.417
106 246374_at AT1G51840 [protein kinase-related] -0.229 -0.127
107 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -0.226 0.567
108 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A -0.224 -0.537
109 249459_at AT5G39580 [Peroxidase superfamily protein] -0.224 0.560
110 264019_at AT2G21130 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.219 0.380
111 248148_at AT5G54930 [AT hook motif-containing protein] -0.215 0.482
112 259033_at AT3G09405 [Pectinacetylesterase family protein] -0.209 0.161
113 255673_at AT4G00340 RLK4, receptor-like protein kinase 4 -0.200 0.099
114 248744_at AT5G48250 BBX8, B-box domain protein 8 -0.199 -0.297
115 265192_at AT1G05060 unknown -0.197 0.351
116 261763_at AT1G15520 ABCG40, ATP-binding cassette G40, ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12 -0.195 0.307
117 262679_at AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 -0.194 1.197
118 250920_at AT5G03390 unknown -0.191 -0.447
119 258130_at AT3G24510 [Defensin-like (DEFL) family protein] -0.188 -0.458
120 261844_at AT1G15940 [Tudor/PWWP/MBT superfamily protein] -0.187 -0.336
121 263751_at AT2G21300 [ATP binding microtubule motor family protein] -0.185 0.524
122 264518_at AT1G09980 [Putative serine esterase family protein] -0.183 -1.209
123 262549_at AT1G31290 AGO3, ARGONAUTE 3 -0.183 0.024
124 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 -0.182 -0.415
125 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.180 0.267
126 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 -0.178 0.193
127 261125_at AT1G04990 [Zinc finger C-x8-C-x5-C-x3-H type family protein] -0.174 -0.117
128 253793_at AT4G28710 ATXIH, MYOSIN XI H, XIH -0.171 -0.753
129 253962_at AT4G26460 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.171 -1.011
130 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 -0.169 1.126
131 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.168 -0.568
132 265767_at AT2G48110 MED33B, REF4, REDUCED EPIDERMAL FLUORESCENCE 4 -0.165 -0.642
133 259439_at AT1G01480 ACS2, 1-amino-cyclopropane-1-carboxylate synthase 2, AT-ACC2 -0.161 -0.747
134 255651_at AT4G00940 AtDOF4.1, DOF4.1, DNA binding with one finger 4.1, ITD1, INTERCELLULAR TRAFFICKING DOF 1 -0.159 0.005
135 264941_at AT1G60680 [NAD(P)-linked oxidoreductase superfamily protein] -0.154 -0.766
136 262118_at AT1G02850 BGLU11, beta glucosidase 11 -0.154 0.042
137 261216_at AT1G33030 [O-methyltransferase family protein] -0.151 -0.505
138 258437_at AT3G16560 [Protein phosphatase 2C family protein] -0.149 0.498
139 264402_at AT2G25140 CLPB-M, CASEIN LYTIC PROTEINASE B-M, CLPB4, casein lytic proteinase B4, HSP98.7, HEAT SHOCK PROTEIN 98.7 -0.144 0.834
140 264597_at AT1G04620 HCAR, 7-hydroxymethyl chlorophyll a (HMChl) reductase -0.142 0.282
141 254945_at AT4G10940 [RING/U-box protein] -0.142 -0.732
142 262085_at AT1G56060 unknown -0.138 -0.036
143 263747_at AT2G21470 ATSAE2, SUMO-ACTIVATING ENZYME 2, EMB2764, EMBRYO DEFECTIVE 2764, SAE2, SUMO-activating enzyme 2 -0.138 -0.679
144 260540_at AT2G43500 NLP8, NIN-like protein 8 -0.137 -0.054
145 258382_at AT3G15355 PFU1, PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, UBC25, ubiquitin-conjugating enzyme 25 -0.136 -0.740
146 247855_at AT5G58210 [hydroxyproline-rich glycoprotein family protein] -0.136 0.221
147 248539_at AT5G50130 [NAD(P)-binding Rossmann-fold superfamily protein] -0.135 -0.613
148 258253_at AT3G26760 [NAD(P)-binding Rossmann-fold superfamily protein] -0.133 -0.257
149 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] -0.132 -0.431
150 261086_at AT1G17460 TRFL3, TRF-like 3 -0.132 -0.282
151 251975_at AT3G53230 AtCDC48B, cell division cycle 48B -0.131 0.144
152 246639_x_at AT5G34895 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1)] -0.131 -0.630
153 264211_at AT1G22770 FB, GI, GIGANTEA -0.131 -0.426
154 253974_at AT4G26540 [Leucine-rich repeat receptor-like protein kinase family protein] -0.129 -0.675
155 267054_at AT2G38370 unknown -0.128 0.822
156 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 -0.127 0.374
157 245447_at AT4G16820 DALL1, DAD1-Like Lipase 1, PLA-I{beta]2, phospholipase A I beta 2 -0.127 -0.291
158 264635_at AT1G65500 unknown -0.126 0.205
159 251896_at AT3G54390 [sequence-specific DNA binding transcription factors] -0.125 -0.656
160 260282_at AT1G80410 EMB2753, EMBRYO DEFECTIVE 2753, OMA, OMISHA -0.125 -0.261
161 254933_at AT4G11130 RDR2, RNA-dependent RNA polymerase 2, SMD1, SILENCING MOVEMENT DEFICIENT 1 -0.125 0.031
162 249456_at AT5G39410 [Saccharopine dehydrogenase ] -0.125 0.340
163 260025_at AT1G30070 [SGS domain-containing protein] -0.124 0.239
164 261141_at AT1G19740 [ATP-dependent protease La (LON) domain protein] -0.121 0.455
165 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 -0.121 -0.273
166 265465_at AT2G37070 unknown -0.121 -0.059
167 247283_at AT5G64250 [Aldolase-type TIM barrel family protein] -0.121 -0.351
168 258990_at AT3G08840 [D-alanine--D-alanine ligase family] -0.117 -0.225
169 256538_x_at AT3G32900 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1)] -0.117 -1.261
170 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 -0.116 0.636
171 255521_at AT4G02280 ATSUS3, SUS3, sucrose synthase 3 -0.116 -0.469
172 262006_at AT1G64570 DUO3, DUO POLLEN 3 -0.115 -0.831
173 258623_at AT3G02790 MBS1, METHYLENE BLUE SENSITIVITY 1 -0.115 1.029
174 265449_at AT2G46610 At-RS31a, arginine/serine-rich splicing factor 31a, RS31a, arginine/serine-rich splicing factor 31a -0.114 0.711
175 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.114 -0.759
176 253097_at AT4G37320 CYP81D5, cytochrome P450, family 81, subfamily D, polypeptide 5 -0.112 -0.412
177 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 -0.111 -0.700