4.0:Information of module
Lipopolysaccaride4 h (leaf)
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006865 amino acid transport BP 2.514e-17
GO:0015711 organic anion transport BP 6.985e-17
GO:0015849 organic acid transport BP 8.681e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019252 starch biosynthetic process BP 1.433e-20
GO:0009657 plastid organization BP 1.828e-19
GO:0005982 starch metabolic process BP 2.614e-18
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Lipopolysaccaride4 h (leaf)		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.778 0.581
2 252511_at AT3G46280 [protein kinase-related] 0.717 1.005
3 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.660 0.258
4 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.630 0.216
5 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] 0.618 0.383
6 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.582 0.125
7 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.528 0.171
8 254447_at AT4G20860 [FAD-binding Berberine family protein] 0.499 0.605
9 254839_at AT4G12400 Hop3, Hop3 0.438 0.124
10 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] 0.436 0.304
11 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.412 0.722
12 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.390 0.319
13 266247_at AT2G27660 [Cysteine/Histidine-rich C1 domain family protein] 0.370 0.049
14 258209_at AT3G14060 unknown 0.366 0.749
15 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.355 0.670
16 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.343 0.601
17 256442_at AT3G10930 unknown 0.340 -0.109
18 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.337 0.258
19 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.328 0.364
20 253173_at AT4G35110 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.324 -0.152
21 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.323 1.020
22 264635_at AT1G65500 unknown 0.316 0.386
23 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.295 0.096
24 254453_at AT4G21120 AAT1, amino acid transporter 1, CAT1, CATIONIC AMINO ACID TRANSPORTER 1 0.284 0.552
25 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.282 0.215
26 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.268 0.128
27 248298_at AT5G53110 [RING/U-box superfamily protein] 0.256 0.182
28 259879_at AT1G76650 CML38, calmodulin-like 38 0.256 0.176
29 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 0.253 0.431
30 247740_at AT5G58940 CRCK1, calmodulin-binding receptor-like cytoplasmic kinase 1 0.252 0.283
31 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.251 0.214
32 254663_at AT4G18290 KAT2, potassium channel in Arabidopsis thaliana 2 0.251 -0.558
33 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.251 0.159
34 252984_at AT4G37990 ATCAD8, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, CAD-B2, CINNAMYL-ALCOHOL DEHYDROGENASE B2, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-2, elicitor-activated gene 3-2 0.247 0.202
35 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.247 0.032
36 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.244 -0.038
37 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.243 0.771
38 256969_at AT3G21080 [ABC transporter-related] 0.243 0.424
39 264774_at AT1G22890 unknown 0.242 -0.131
40 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] 0.241 0.246
41 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] 0.224 0.304
42 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.220 0.861
43 247610_at AT5G60630 unknown 0.217 0.601
44 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.215 0.232
45 253571_at AT4G31000 [Calmodulin-binding protein] 0.211 0.123
46 261727_at AT1G76090 SMT3, sterol methyltransferase 3 0.200 0.169
47 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 0.195 0.091
48 246373_at AT1G51860 [Leucine-rich repeat protein kinase family protein] 0.191 0.042
49 263314_at AT2G05760 [Xanthine/uracil permease family protein] 0.187 0.054
50 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.187 0.322
51 264767_at AT1G61380 SD1-29, S-domain-1 29 0.180 0.047
52 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.175 0.331
53 256627_at AT3G19970 [alpha/beta-Hydrolases superfamily protein] 0.168 -0.061
54 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] -0.214 -0.195
55 258232_at AT3G27750 EMB3123, EMBRYO DEFECTIVE 3123, THA8, Thylakoid Assembly 8 -0.212 -0.548
56 265828_at AT2G14520 unknown -0.205 -0.107
57 253097_at AT4G37320 CYP81D5, cytochrome P450, family 81, subfamily D, polypeptide 5 -0.184 -0.010
58 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.174 -0.654
59 256237_at AT3G12610 DRT100, DNA-DAMAGE REPAIR/TOLERATION 100 -0.173 -0.021
60 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] -0.170 -0.092
61 258033_at AT3G21250 ABCC8, ATP-binding cassette C8, ATMRP6, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, MRP6, multidrug resistance-associated protein 6 -0.170 -0.136
62 262181_at AT1G78060 [Glycosyl hydrolase family protein] -0.168 -0.021
63 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] -0.162 -0.031
64 253356_at AT4G33390 unknown -0.160 -0.001
65 256105_at AT1G16910 LSH8, LIGHT SENSITIVE HYPOCOTYLS 8 -0.154 0.045
66 264972_at AT1G67370 ASY1, ASYNAPTIC 1, ATASY1 -0.151 0.021
67 247671_at AT5G60210 RIP5, ROP interactive partner 5 -0.151 0.034
68 250045_at AT5G17700 [MATE efflux family protein] -0.148 0.107
69 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.148 -0.650
70 248194_at AT5G54095 unknown -0.147 0.023
71 251485_at AT3G59550 ATRAD21.2, SISTER CHROMATID COHESION 1 PROTEIN 3, ATSYN3, SYN3 -0.146 0.142
72 252698_at AT3G43670 [Copper amine oxidase family protein] -0.141 0.015
73 251050_at AT5G02440 unknown -0.141 -0.146
74 266915_at AT2G45870 [Bestrophin-like protein] -0.141 -0.108
75 265504_at AT2G15520 [similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G15520.1)] -0.140 -0.101
76 264176_at AT1G02110 unknown -0.135 -0.039
77 261374_at AT1G52990 [thioredoxin family protein] -0.134 -0.140
78 245171_at AT2G47560 [RING/U-box superfamily protein] -0.134 0.102
79 254789_at AT4G12880 AtENODL19, ENODL19, early nodulin-like protein 19 -0.134 0.089
80 265647_at AT2G27410 unknown -0.133 -0.150
81 247681_at AT5G59640 [CACTA-like transposase family (En/Spm), has a 5.1e-159 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)] -0.133 -0.008
82 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 -0.133 -0.547
83 246551_at AT5G15070 [Phosphoglycerate mutase-like family protein] -0.132 0.010
84 246939_at AT5G25390 SHN3, shine3 -0.130 0.023
85 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.130 0.006
86 265484_at AT2G15820 OTP51, ORGANELLE TRANSCRIPT PROCESSING 51 -0.130 -0.189
87 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.128 0.774
88 250802_at AT5G04970 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.127 0.078
89 258355_at AT3G14330 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.127 -0.472
90 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 -0.127 -0.059
91 251271_at AT3G62050 [Putative endonuclease or glycosyl hydrolase] -0.125 -0.098
92 251554_at AT3G58670 unknown -0.123 -0.074
93 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C -0.123 -0.117
94 265601_at AT2G14390 unknown -0.122 -0.054
95 250633_at AT5G07460 ATMSRA2, ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, PMSR2, peptidemethionine sulfoxide reductase 2 -0.120 -0.009
96 251395_at AT2G45470 AGP8, ARABINOGALACTAN PROTEIN 8, FLA8, FASCICLIN-like arabinogalactan protein 8 -0.120 -0.206
97 263793_at AT2G24630 ATCSLC08, ATCSLC8, CELLULOSE-SYNTHASE LIKE C8, CSLC08 -0.120 -0.133
98 265065_at AT1G03980 ATPCS2, phytochelatin synthase 2, PCS2, phytochelatin synthase 2 -0.118 0.250
99 254011_at AT4G26370 [antitermination NusB domain-containing protein] -0.118 -0.555
100 246047_at AT5G28870 [pseudogene] -0.117 -0.242
101 251133_at AT5G01240 LAX1, like AUXIN RESISTANT 1 -0.117 -0.171
102 252420_at AT3G47530 [Pentatricopeptide repeat (PPR) superfamily protein] -0.116 0.090
103 252797_at AT3G42300 unknown -0.116 -0.248
104 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.115 -0.360
105 259291_at AT3G11550 CASP2, Casparian strip membrane domain protein 2 -0.115 0.008