4.0:Information of module
Lipopolysaccaride4 h (leaf)
In comparison with cat2-2; harvested 8h continiously maintained in high CO2; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006865 amino acid transport BP 2.514e-17
GO:0015711 organic anion transport BP 6.985e-17
GO:0015849 organic acid transport BP 8.681e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019252 starch biosynthetic process BP 1.433e-20
GO:0009657 plastid organization BP 1.828e-19
GO:0005982 starch metabolic process BP 2.614e-18
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Lipopolysaccaride4 h (leaf)		 Log2 signal ratio
cat2-2; harvested 8h continiously maintained in high CO2;
1 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.778 -0.530
2 252511_at AT3G46280 [protein kinase-related] 0.717 -0.427
3 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.660 -0.416
4 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.630 -0.388
5 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] 0.618 -0.348
6 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.582 -0.531
7 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.528 -0.147
8 254447_at AT4G20860 [FAD-binding Berberine family protein] 0.499 -0.332
9 254839_at AT4G12400 Hop3, Hop3 0.438 -0.020
10 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] 0.436 -0.387
11 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.412 -0.439
12 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.390 -0.057
13 266247_at AT2G27660 [Cysteine/Histidine-rich C1 domain family protein] 0.370 -0.318
14 258209_at AT3G14060 unknown 0.366 -0.197
15 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.355 -0.250
16 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.343 -0.125
17 256442_at AT3G10930 unknown 0.340 -0.339
18 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.337 -0.287
19 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.328 -0.194
20 253173_at AT4G35110 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.324 -0.128
21 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.323 -0.303
22 264635_at AT1G65500 unknown 0.316 -0.303
23 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.295 -0.054
24 254453_at AT4G21120 AAT1, amino acid transporter 1, CAT1, CATIONIC AMINO ACID TRANSPORTER 1 0.284 -0.202
25 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.282 -0.137
26 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.268 -0.152
27 248298_at AT5G53110 [RING/U-box superfamily protein] 0.256 -0.089
28 259879_at AT1G76650 CML38, calmodulin-like 38 0.256 -0.186
29 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 0.253 -0.102
30 247740_at AT5G58940 CRCK1, calmodulin-binding receptor-like cytoplasmic kinase 1 0.252 -0.109
31 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.251 -0.030
32 254663_at AT4G18290 KAT2, potassium channel in Arabidopsis thaliana 2 0.251 -0.014
33 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.251 -0.042
34 252984_at AT4G37990 ATCAD8, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, CAD-B2, CINNAMYL-ALCOHOL DEHYDROGENASE B2, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-2, elicitor-activated gene 3-2 0.247 0.051
35 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.247 -0.318
36 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.244 0.000
37 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.243 -0.360
38 256969_at AT3G21080 [ABC transporter-related] 0.243 -0.422
39 264774_at AT1G22890 unknown 0.242 -0.173
40 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] 0.241 -0.099
41 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] 0.224 -0.020
42 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.220 -0.500
43 247610_at AT5G60630 unknown 0.217 -0.064
44 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.215 -0.073
45 253571_at AT4G31000 [Calmodulin-binding protein] 0.211 0.090
46 261727_at AT1G76090 SMT3, sterol methyltransferase 3 0.200 0.071
47 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 0.195 -0.162
48 246373_at AT1G51860 [Leucine-rich repeat protein kinase family protein] 0.191 -0.342
49 263314_at AT2G05760 [Xanthine/uracil permease family protein] 0.187 0.016
50 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.187 -0.319
51 264767_at AT1G61380 SD1-29, S-domain-1 29 0.180 -0.158
52 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.175 0.023
53 256627_at AT3G19970 [alpha/beta-Hydrolases superfamily protein] 0.168 0.052
54 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] -0.214 0.073
55 258232_at AT3G27750 EMB3123, EMBRYO DEFECTIVE 3123, THA8, Thylakoid Assembly 8 -0.212 0.009
56 265828_at AT2G14520 unknown -0.205 0.044
57 253097_at AT4G37320 CYP81D5, cytochrome P450, family 81, subfamily D, polypeptide 5 -0.184 0.013
58 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.174 0.078
59 256237_at AT3G12610 DRT100, DNA-DAMAGE REPAIR/TOLERATION 100 -0.173 0.060
60 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] -0.170 0.052
61 258033_at AT3G21250 ABCC8, ATP-binding cassette C8, ATMRP6, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, MRP6, multidrug resistance-associated protein 6 -0.170 0.027
62 262181_at AT1G78060 [Glycosyl hydrolase family protein] -0.168 0.036
63 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] -0.162 -0.057
64 253356_at AT4G33390 unknown -0.160 0.081
65 256105_at AT1G16910 LSH8, LIGHT SENSITIVE HYPOCOTYLS 8 -0.154 0.007
66 264972_at AT1G67370 ASY1, ASYNAPTIC 1, ATASY1 -0.151 0.052
67 247671_at AT5G60210 RIP5, ROP interactive partner 5 -0.151 0.016
68 250045_at AT5G17700 [MATE efflux family protein] -0.148 0.042
69 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.148 0.023
70 248194_at AT5G54095 unknown -0.147 0.015
71 251485_at AT3G59550 ATRAD21.2, SISTER CHROMATID COHESION 1 PROTEIN 3, ATSYN3, SYN3 -0.146 0.020
72 252698_at AT3G43670 [Copper amine oxidase family protein] -0.141 -0.015
73 251050_at AT5G02440 unknown -0.141 0.011
74 266915_at AT2G45870 [Bestrophin-like protein] -0.141 -0.003
75 265504_at AT2G15520 [similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G15520.1)] -0.140 0.031
76 264176_at AT1G02110 unknown -0.135 0.018
77 261374_at AT1G52990 [thioredoxin family protein] -0.134 -0.001
78 245171_at AT2G47560 [RING/U-box superfamily protein] -0.134 0.065
79 254789_at AT4G12880 AtENODL19, ENODL19, early nodulin-like protein 19 -0.134 0.028
80 265647_at AT2G27410 unknown -0.133 0.114
81 247681_at AT5G59640 [CACTA-like transposase family (En/Spm), has a 5.1e-159 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=Shooter (Zea mays)] -0.133 0.019
82 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 -0.133 0.027
83 246551_at AT5G15070 [Phosphoglycerate mutase-like family protein] -0.132 0.089
84 246939_at AT5G25390 SHN3, shine3 -0.130 0.069
85 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.130 0.070
86 265484_at AT2G15820 OTP51, ORGANELLE TRANSCRIPT PROCESSING 51 -0.130 0.026
87 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.128 -0.010
88 250802_at AT5G04970 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.127 -0.034
89 258355_at AT3G14330 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.127 0.051
90 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 -0.127 -0.098
91 251271_at AT3G62050 [Putative endonuclease or glycosyl hydrolase] -0.125 0.038
92 251554_at AT3G58670 unknown -0.123 -0.036
93 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C -0.123 -0.005
94 265601_at AT2G14390 unknown -0.122 0.013
95 250633_at AT5G07460 ATMSRA2, ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, PMSR2, peptidemethionine sulfoxide reductase 2 -0.120 -0.033
96 251395_at AT2G45470 AGP8, ARABINOGALACTAN PROTEIN 8, FLA8, FASCICLIN-like arabinogalactan protein 8 -0.120 0.056
97 263793_at AT2G24630 ATCSLC08, ATCSLC8, CELLULOSE-SYNTHASE LIKE C8, CSLC08 -0.120 0.043
98 265065_at AT1G03980 ATPCS2, phytochelatin synthase 2, PCS2, phytochelatin synthase 2 -0.118 0.002
99 254011_at AT4G26370 [antitermination NusB domain-containing protein] -0.118 0.043
100 246047_at AT5G28870 [pseudogene] -0.117 0.037
101 251133_at AT5G01240 LAX1, like AUXIN RESISTANT 1 -0.117 0.043
102 252420_at AT3G47530 [Pentatricopeptide repeat (PPR) superfamily protein] -0.116 -0.039
103 252797_at AT3G42300 unknown -0.116 0.018
104 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.115 0.016
105 259291_at AT3G11550 CASP2, Casparian strip membrane domain protein 2 -0.115 0.088