4.0:Information of module
Mutant nph4-1
In comparison with IAA7mII over-expressor IAA Treated help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000041 transition metal ion transport BP 7.969e-04
GO:0044550 secondary metabolite biosynthetic proces... BP 6.292e-03
GO:0044262 cellular carbohydrate metabolic process BP 8.166e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009069 serine family amino acid metabolic proce... BP 1.298e-06
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 1.161e-05
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 1.161e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant nph4-1		 Log2 signal ratio
IAA7mII over-expressor IAA Treated
1 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.524 0.139
2 249174_at AT5G42900 COR27, cold regulated gene 27 0.503 0.180
3 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 0.396 0.092
4 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] 0.372 0.184
5 249599_at AT5G37990 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.356 -0.012
6 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.351 0.127
7 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.306 0.216
8 249850_at AT5G23240 DJC76, DNA J protein C76 0.276 -0.146
9 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 0.269 0.271
10 245550_at AT4G15330 CYP705A1, cytochrome P450, family 705, subfamily A, polypeptide 1 0.240 0.178
11 248372_at AT5G51850 TRM24, TON1 Recruiting Motif 24 0.239 0.097
12 257089_at AT3G20520 GDPDL5, Glycerophosphodiester phosphodiesterase (GDPD) like 5, SVL3, SHV3-like 3 0.237 0.032
13 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.230 0.117
14 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] 0.226 0.123
15 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.221 0.031
16 260416_at AT1G69670 ATCUL3B, ARABIDOPSIS THALIANA CULLIN 3B, CUL3B, cullin 3B 0.217 0.064
17 266989_at AT2G39330 JAL23, jacalin-related lectin 23 0.214 0.140
18 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.208 -0.130
19 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.205 -0.111
20 267121_at AT2G23540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.198 0.424
21 262905_at AT1G59730 ATH7, thioredoxin H-type 7, TH7, thioredoxin H-type 7 0.195 0.104
22 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 0.195 0.149
23 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 0.192 0.362
24 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.189 0.159
25 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 0.188 0.034
26 249205_at AT5G42600 MRN1, marneral synthase 1 0.187 -0.077
27 250823_at AT5G05180 unknown 0.178 -0.120
28 262811_at AT1G11700 unknown 0.178 0.176
29 262324_at AT1G64170 ATCHX16, cation/H+ exchanger 16, CHX16, cation/H+ exchanger 16 0.177 0.151
30 263825_at AT2G40370 LAC5, laccase 5 0.176 0.062
31 247657_at AT5G59845 [Gibberellin-regulated family protein] 0.175 0.167
32 260234_at AT1G74460 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.172 0.167
33 248467_at AT5G50800 AtSWEET13, SWEET13 0.169 0.175
34 267036_at AT2G38465 unknown 0.166 -0.066
35 246331_at AT3G44820 [Phototropic-responsive NPH3 family protein] 0.163 0.173
36 265083_at AT1G03820 unknown 0.161 -0.052
37 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.159 -0.134
38 258254_at AT3G26782 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.159 0.016
39 255488_at AT4G02630 [Protein kinase superfamily protein] 0.156 -0.116
40 249320_at AT5G40910 [Disease resistance protein (TIR-NBS-LRR class) family] 0.155 -0.017
41 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.155 0.234
42 249881_at AT5G23190 CYP86B1, cytochrome P450, family 86, subfamily B, polypeptide 1 0.155 -0.036
43 253373_at AT4G33150 LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SDH, SACCHAROPINE DEHYDROGENASE 0.155 0.090
44 249953_at AT5G18960 FRS12, FAR1-related sequence 12 0.151 0.011
45 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.150 0.230
46 250239_at AT5G13580 ABCG6, ATP-binding cassette G6 0.148 0.098
47 249576_at AT5G37690 [SGNH hydrolase-type esterase superfamily protein] 0.147 0.289
48 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 0.147 0.062
49 260611_at AT2G43670 [Carbohydrate-binding X8 domain superfamily protein] 0.145 0.041
50 261402_at AT1G79670 RFO1, RESISTANCE TO FUSARIUM OXYSPORUM 1, WAKL22 0.145 0.018
51 254777_at AT4G12960 AtGILT, GILT, gamma-interferon-responsive lysosomal thiol reductase 0.145 0.156
52 245971_at AT5G20730 ARF7, AUXIN RESPONSE FACTOR 7, BIP, BIPOSTO, IAA21, indole-3-acetic acid inducible 21, IAA23, indole-3-acetic acid inducible 23, IAA25, indole-3-acetic acid inducible 25, MSG1, MASSUGU 1, NPH4, NON-PHOTOTROPHIC HYPOCOTYL, TIR5, TRANSPORT INHIBITOR RESPONSE 5 -0.548 0.025
53 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.514 0.018
54 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.471 -0.072
55 247878_at AT5G57760 unknown -0.439 0.185
56 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.409 0.214
57 248509_at AT5G50335 unknown -0.408 0.110
58 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.407 -0.220
59 261651_at AT1G27760 ATSAT32, SALT-TOLERANCE 32, SAT32, SALT-TOLERANCE 32 -0.387 0.063
60 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE -0.353 0.113
61 250509_at AT5G09970 CYP78A7, cytochrome P450, family 78, subfamily A, polypeptide 7 -0.347 0.230
62 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.336 -0.072
63 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.335 0.077
64 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.317 0.228
65 261717_at AT1G18400 BEE1, BR enhanced expression 1 -0.316 0.182
66 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.274 -0.057
67 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.268 0.219
68 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.262 -0.203
69 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.255 0.340
70 254609_at AT4G18970 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.242 0.135
71 259015_at AT3G07350 unknown -0.234 0.131
72 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.229 0.365
73 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.221 0.070
74 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.217 -0.113
75 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.216 0.270
76 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.214 -1.160
77 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 -0.210 0.191
78 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.209 0.161
79 267230_at AT2G44080 ARL, ARGOS-like -0.207 0.108
80 259927_at AT1G75100 JAC1, J-domain protein required for chloroplast accumulation response 1 -0.207 -0.273
81 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.202 0.274
82 252539_at AT3G45730 unknown -0.198 -0.282
83 247880_at AT5G57780 P1R1, P1R1 -0.196 0.060
84 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.196 0.102
85 259163_at AT3G01490 [Protein kinase superfamily protein] -0.188 -0.147
86 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.188 0.184
87 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] -0.185 0.146
88 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.182 0.099
89 258764_at AT3G10720 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.175 -0.291
90 256285_at AT3G12510 [MADS-box family protein] -0.171 0.188
91 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.169 0.179
92 250472_at AT5G10210 unknown -0.168 0.087
93 259275_at AT3G01060 unknown -0.166 0.084
94 246992_at AT5G67430 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.165 0.009
95 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.163 0.208
96 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.163 -0.135
97 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.160 0.055
98 264395_at AT1G12070 [Immunoglobulin E-set superfamily protein] -0.160 0.029
99 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 -0.159 -0.132
100 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.154 0.068
101 247585_at AT5G60680 unknown -0.150 -0.013