4.0:Information of module
Mutant arf19-1
In comparison with CCA14 dark late help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000041 transition metal ion transport BP 3.248e-07
GO:0010167 response to nitrate BP 9.902e-05
GO:0030001 metal ion transport BP 2.410e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 1.195e-06
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 1.195e-06
GO:0032958 inositol phosphate biosynthetic process BP 1.462e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant arf19-1		 Log2 signal ratio
CCA14 dark late
1 249174_at AT5G42900 COR27, cold regulated gene 27 0.429 0.268
2 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 0.423 0.067
3 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 0.259 0.004
4 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.204 -0.475
5 256027_at AT1G34160 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.189 0.010
6 256563_at AT3G29780 RALFL27, ralf-like 27 0.176 0.037
7 266066_at AT2G18800 ATXTH21, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21, XTH21, xyloglucan endotransglucosylase/hydrolase 21 0.176 -0.017
8 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 0.176 0.008
9 265355_at AT2G16760 [Calcium-dependent phosphotriesterase superfamily protein] 0.166 -0.027
10 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] 0.151 -0.094
11 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.146 0.080
12 267121_at AT2G23540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.145 0.046
13 259735_at AT1G64405 unknown 0.142 0.041
14 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.140 0.023
15 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.140 0.100
16 260296_at AT1G63750 [Disease resistance protein (TIR-NBS-LRR class) family] 0.139 -0.104
17 246476_at AT5G16730 [LOCATED IN: chloroplast] 0.136 -0.045
18 246652_at AT5G35190 EXT13, extensin 13 0.132 -0.204
19 263283_at AT2G36090 [F-box family protein] 0.132 0.051
20 245630_at AT1G25360 [Pentatricopeptide repeat (PPR) superfamily protein] 0.132 0.058
21 258178_at AT3G21680 unknown 0.131 0.013
22 249470_at AT5G39350 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.131 -0.058
23 264937_at AT1G61130 SCPL32, serine carboxypeptidase-like 32 0.130 -0.004
24 258013_at AT3G19320 [Leucine-rich repeat (LRR) family protein] 0.128 -0.122
25 266231_at AT2G02220 ATPSKR1, PHYTOSULFOKIN RECEPTOR 1, PSKR1, phytosulfokin receptor 1 0.124 0.067
26 266913_at AT2G45890 ATROPGEF4, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4, GEF4, guanine exchange factor 4, RHS11, ROOT HAIR SPECIFIC 11, ROPGEF4, ROP (rho of plants) guanine nucleotide exchange factor 4 0.123 0.021
27 258342_at AT3G22800 [Leucine-rich repeat (LRR) family protein] 0.122 -0.069
28 259562_at AT1G21200 [sequence-specific DNA binding transcription factors] 0.122 0.114
29 256010_at AT1G19220 ARF11, AUXIN RESPONSE FACTOR11, ARF19, auxin response factor 19, IAA22, indole-3-acetic acid inducible 22 -0.560 0.056
30 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.295 0.052
31 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.249 -0.020
32 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.248 -0.145
33 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.244 0.011
34 261292_at AT1G36940 unknown -0.231 0.146
35 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.204 0.655
36 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.199 -0.022
37 252412_at AT3G47295 unknown -0.196 -0.042
38 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 -0.194 0.077
39 260614_at AT1G53390 ABCG24, ATP-binding cassette G24 -0.186 0.005
40 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.185 -0.005
41 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 -0.178 0.025
42 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 -0.159 0.601
43 248319_at AT5G52710 [Copper transport protein family] -0.158 0.056
44 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 -0.157 -0.055
45 267063_at AT2G41120 unknown -0.155 -0.276
46 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.153 0.554
47 250472_at AT5G10210 unknown -0.152 0.122
48 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.149 0.042
49 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.148 0.037
50 247214_at AT5G64850 unknown -0.147 -0.042
51 248207_at AT5G53970 TAT7, tyrosine aminotransferase 7 -0.141 -0.181
52 264195_at AT1G22690 [Gibberellin-regulated family protein] -0.141 -0.217
53 267529_at AT2G45490 AtAUR3, ataurora3, AUR3, ataurora3 -0.131 -0.047
54 266481_at AT2G31070 TCP10, TCP domain protein 10 -0.128 -0.105
55 256816_at AT3G21400 unknown -0.127 -0.027
56 261834_at AT1G10640 [Pectin lyase-like superfamily protein] -0.127 0.022