4.0:Information of module
Mutant axr3-1
In comparison with whole roots 140 mM NaCl 4 hour help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009605 response to external stimulus BP 2.305e-06
GO:0044699 single-organism process BP 3.066e-06
GO:0009607 response to biotic stimulus BP 1.009e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 3.847e-25
GO:0090627 plant epidermal cell differentiation BP 6.419e-25
GO:0010054 trichoblast differentiation BP 7.707e-25
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant axr3-1		 Log2 signal ratio
whole roots 140 mM NaCl 4 hour
1 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 1.033 0.411
2 258983_at AT3G08860 PYD4, PYRIMIDINE 4 1.020 0.564
3 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 1.000 0.220
4 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.874 -0.003
5 250868_at AT5G03860 MLS, malate synthase 0.790 0.160
6 263829_at AT2G40435 unknown 0.786 -0.016
7 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.761 -0.013
8 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.665 0.292
9 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.652 -0.250
10 257947_at AT3G21720 ICL, isocitrate lyase 0.590 0.142
11 267389_at AT2G44460 BGLU28, beta glucosidase 28 0.582 0.321
12 257089_at AT3G20520 GDPDL5, Glycerophosphodiester phosphodiesterase (GDPD) like 5, SVL3, SHV3-like 3 0.557 0.053
13 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.528 0.090
14 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.528 -0.004
15 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.527 -0.259
16 252888_at AT4G39210 APL3 0.522 0.280
17 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.513 0.066
18 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.498 0.448
19 246228_at AT4G36430 [Peroxidase superfamily protein] 0.496 0.068
20 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] 0.487 0.212
21 261221_at AT1G19960 unknown 0.476 -0.514
22 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.474 -0.002
23 250435_at AT5G10380 ATRING1, RING1 0.470 0.099
24 255958_at AT1G22150 SULTR1;3, sulfate transporter 1;3 0.467 0.153
25 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] 0.459 -0.099
26 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 0.456 0.371
27 256789_at AT3G13672 SINA2 0.455 0.139
28 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.449 0.036
29 245262_at AT4G16563 [Eukaryotic aspartyl protease family protein] 0.441 -0.078
30 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 0.437 0.875
31 251858_at AT3G54820 PIP2;5, plasma membrane intrinsic protein 2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2D 0.434 0.255
32 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 0.432 0.465
33 261023_at AT1G12200 FMO, flavin monooxygenase 0.421 0.038
34 254153_at AT4G24450 ATGWD2, GWD3, PWD, phosphoglucan, water dikinase 0.418 0.085
35 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.413 0.051
36 250499_at AT5G09730 ATBX3, ATBXL3, BETA-XYLOSIDASE 3, BX3, BXL3, beta-xylosidase 3, XYL3 0.413 -0.041
37 247447_at AT5G62730 [Major facilitator superfamily protein] 0.412 -0.000
38 262154_at AT1G52700 [alpha/beta-Hydrolases superfamily protein] 0.408 0.042
39 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 0.407 -0.012
40 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 0.406 -0.028
41 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.398 0.089
42 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.398 0.061
43 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.389 0.177
44 264403_at AT2G25150 [HXXXD-type acyl-transferase family protein] 0.387 -0.130
45 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.385 0.284
46 250702_at AT5G06730 [Peroxidase superfamily protein] 0.384 0.396
47 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.382 -0.156
48 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] 0.379 0.488
49 263380_at AT2G40200 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.377 0.007
50 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.375 -0.033
51 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.375 0.009
52 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.373 0.034
53 249955_at AT5G18840 [Major facilitator superfamily protein] 0.368 -0.028
54 259590_at AT1G28160 [Integrase-type DNA-binding superfamily protein] 0.363 0.062
55 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 0.362 -0.033
56 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.360 0.566
57 266989_at AT2G39330 JAL23, jacalin-related lectin 23 0.354 0.029
58 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 0.353 0.192
59 262373_at AT1G73120 unknown 0.352 -0.227
60 248961_at AT5G45650 [subtilase family protein] 0.349 -0.229
61 256839_at AT3G22930 AtCML11, CML11, calmodulin-like 11 0.344 0.058
62 257517_at AT3G16330 unknown 0.342 0.141
63 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.338 0.019
64 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.333 0.368
65 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.332 -0.052
66 252136_at AT3G50770 CML41, calmodulin-like 41 0.331 -0.136
67 250798_at AT5G05340 PRX52, peroxidase 52 0.326 0.157
68 248777_at AT5G47920 unknown 0.326 0.202
69 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.325 -0.102
70 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.323 0.245
71 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase 0.322 0.059
72 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.321 0.147
73 266209_at AT2G27550 ATC, centroradialis 0.320 0.076
74 263228_at AT1G30700 [FAD-binding Berberine family protein] 0.318 0.144
75 265769_at AT2G48090 unknown 0.318 0.168
76 252896_at AT4G39480 CYP96A9, cytochrome P450, family 96, subfamily A, polypeptide 9 0.316 -0.027
77 260335_at AT1G74000 SS3, strictosidine synthase 3 0.313 0.188
78 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.311 0.682
79 253525_at AT4G31330 unknown 0.311 -0.331
80 259302_at AT3G05120 ATGID1A, GA INSENSITIVE DWARF1A, GID1A, GA INSENSITIVE DWARF1A 0.307 -0.099
81 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] 0.301 0.022
82 246652_at AT5G35190 EXT13, extensin 13 -1.001 -0.291
83 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.991 -0.270
84 261157_at AT1G34510 [Peroxidase superfamily protein] -0.966 -0.268
85 252238_at AT3G49960 [Peroxidase superfamily protein] -0.891 -0.121
86 253763_at AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 -0.879 -0.348
87 249934_at AT5G22410 RHS18, root hair specific 18 -0.862 -0.236
88 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.857 -0.781
89 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.829 -0.164
90 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.797 -0.156
91 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.782 -0.260
92 258746_at AT3G05950 [RmlC-like cupins superfamily protein] -0.767 -0.040
93 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.750 0.008
94 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.741 -0.068
95 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.729 -0.136
96 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.721 -0.057
97 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.713 0.002
98 246991_at AT5G67400 RHS19, root hair specific 19 -0.704 -0.110
99 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.702 -0.402
100 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.699 -0.100
101 253155_at AT4G35720 unknown -0.660 0.166
102 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.654 -0.084
103 266276_at AT2G29330 TRI, tropinone reductase -0.638 -0.318
104 246149_at AT5G19890 [Peroxidase superfamily protein] -0.638 -0.195
105 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.614 0.427
106 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 -0.607 -0.576
107 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.600 0.026
108 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.590 -0.050
109 249996_at AT5G18600 [Thioredoxin superfamily protein] -0.578 0.033
110 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.563 -0.114
111 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.562 -0.192
112 258765_at AT3G10710 RHS12, root hair specific 12 -0.559 -0.019
113 252765_at AT3G42800 unknown -0.554 -0.091
114 258091_at AT3G14560 unknown -0.543 0.185
115 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.529 -0.148
116 251423_at AT3G60550 CYCP3;2, cyclin p3;2 -0.527 -0.120
117 255516_at AT4G02270 RHS13, root hair specific 13 -0.526 -0.198
118 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 -0.525 0.002
119 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 -0.522 0.000
120 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 -0.521 -0.409
121 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.514 -0.511
122 253613_at AT4G30320 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.513 -0.078
123 245506_at AT4G15700 [Thioredoxin superfamily protein] -0.511 0.003
124 245392_at AT4G15680 [Thioredoxin superfamily protein] -0.493 -0.040
125 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.487 -0.166
126 245505_at AT4G15690 [Thioredoxin superfamily protein] -0.476 -0.065
127 260012_at AT1G67865 unknown -0.473 -0.014
128 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.469 0.013
129 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.468 -0.111
130 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER -0.464 0.176
131 258468_at AT3G06070 unknown -0.459 -0.003
132 263552_x_at AT2G24980 EXT6, extensin 6 -0.458 -0.102
133 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.458 -0.230
134 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.456 -0.010
135 265246_at AT2G43050 ATPMEPCRD -0.455 -0.201
136 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.453 -0.404
137 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.453 -0.077
138 263614_at AT2G25240 AtCCP3, CCP3, conserved in ciliated species and in the land plants 3 -0.453 -0.053
139 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.449 0.148
140 257701_at AT3G12710 [DNA glycosylase superfamily protein] -0.446 0.084
141 250778_at AT5G05500 MOP10 -0.445 -0.068
142 251575_at AT3G58120 ATBZIP61, BZIP61 -0.442 0.071
143 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 -0.430 -0.156
144 264647_at AT1G09090 ATRBOHB, respiratory burst oxidase homolog B, ATRBOHB-BETA, RBOHB, respiratory burst oxidase homolog B -0.428 -0.526
145 253998_at AT4G26010 [Peroxidase superfamily protein] -0.425 -0.135
146 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.423 -0.090
147 246229_at AT4G37160 sks15, SKU5 similar 15 -0.417 -0.075
148 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.415 0.334
149 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.410 0.078
150 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -0.404 -0.046
151 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 -0.396 -0.049
152 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 -0.394 0.003
153 245966_at AT5G19790 RAP2.11, related to AP2 11 -0.394 -0.021
154 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.394 -0.243
155 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 -0.393 0.030
156 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] -0.393 0.081
157 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.388 -0.291
158 260527_at AT2G47270 UPB1, UPBEAT1 -0.386 0.170
159 265102_at AT1G30870 [Peroxidase superfamily protein] -0.376 0.011
160 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.375 -0.117
161 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] -0.369 -0.208